CmaCh11G001240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G001240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr11: 668013 .. 674090 (-)
RNA-Seq Expression	CmaCh11G001240
Synteny	CmaCh11G001240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTCAAGAAAGCTCCTCAGAAGATCGGTTTACAGTTTTCTTCTGAATTATCAGTTCTTCACCTCAATTGCGGCTGTTCTTGCGTTTCCGTATGCAACATCTGTTCTTCTTTCACAAACTGTTCTTCCTTCTTCTTCTCTTTTTTCCTCTGCTTTTGATCATTTCAGGGCTCTGTTTGATGCTGCTGGGTTCCCCATATCTTCAAAATTCTTCACAATTCTCATTCAGAAGCTCTCTCAAACGGTTGTTTCCTCCATTTATTCTCTACCCTTTTCTCTGACTTTCCTTTTGATTTCAAAAGCCTGTGTAATTCAAGCTTTGAATCAGCAGAAACCCAGTTTGGAGCCGTCTTTTTCTTCGATTATGTCGCTTTTCAATCCCCTCCTTGTGACCCATGTCTGCATTTCGTTCGTCTTCGTCTCTGTCAATGCAACAGTGTTTTTCCTGCTGTTTTTCGCCTTCAATTGCCTCCAGGGATTTGGGTTCTTCTCCCCCAATTGGATCATGTGGGTATCAGTTTTGGGGGCTTTTTTGTATTCAATAGCGATTGCTAAAGCCATCATAATCTGTAATTTGGCATCGGTGTTGTCGGGGATGGAGAGGAAAGGGGGATTCATGGCGATTCTTAAGGCTTGGGTTTTGATTCAGGGGAGAAGCGCGACGGCGCTGTTGGTGGCGCTGCCTTTCAATATGGGTATGGCAGGCATTGAAGCTCTGTTCCAGTACAGAATAGTGGGAGGTTACCATTCAAGGGAGAGATTGGGGGCTTGGATGGTGGTGGAAGGAATGTTTGTGGCGTATTTGTACTCTGTTTTTGTGGTACTTGACGCCATTGTTAACACCATGTTCTTCAAAAGTTACAGAATGGGTTATGGAATGTGTCTGGAAAGGAAGAGGTGTGTTTGTTGTTGGATGGATGTTGGTGAAAAGGAGAGTGACGGTGGATGGCCTCCATTGGAAGGGGTTTGAAGAAGTTCCATGAGAGAGATGGTTTCAGGCCCATTGAAATTGAATTGAAACAGAGACTCTCTTCATAAGTTTTACTCTATGGGGAGTCTGCAACTCGTGAACTTGCTTGAGCAAACAAAAACAAAACTGCATTCCAATTCCTATTTCTTTCAAGCTGTAAATAACCTTATCTTTCATGATATTTGAAAGCTTTTATCTATGTGGGTTTGGGTTTTAGTACCTTTGGTTGTGTTACTGTCTATTTTAATGGAAAAATTTACCCTAGATGCTTACTCTTTCTACTAAAAGTCACGTAAAGGTTTCAAAACTATGAATGTTGGATGAAAATCAACATTCTTTTGACTCTCATATTATTTGTAACAGCTCAAGTCTACCGCTAACAAATTTTAATGTATCTAGTTTTGGTACCATTTGTAACCGTCCAAACCCACCATTAGTAGACATTGTTTGCTTTGGTCCGTATCACCGTAAACTTCACGATTCTAAAACGTGTCTATTAGGAAGAGGTTTCCACACCTTTATAAAAAATGTTTTGTTTTCCTCTCTAATCATGTGAGACCTGGTGGTGACATGATAGTGACTAGAACACTTACTTCGATTAAGTCTGAAAGGACGACGTTTCTTCCCATATTTCAATCTTTGAGTCGAGAAGCAAAATCCCCAAATAGAAAGTAGAAATGTTCAGGCGGATGAGAACTAATTAAAGAAACAAAACAAAAGGTGCCATAAAATGGTGAAGACAGCTACTAAGTTAAAGCACCTGTTTGGTCTCACGACGAGTAGAGTACATCTTACGGCGGCTTTAATAAACCCCTGAAAGAGACGGCTTTAATAAATGCTATGAAATAATTGCATATTTGGCACCACATATCTCCAGCAAGTGCTACGAAAGCCACCAAATTTTTCAAGCACTTGACCCAATTCTTGTTTTGAGCCTTTAATCATAAGCTCTAGTGGACAATGCTTGTCTCAAAGATTCCGCTAAGGACAACAATCAAGGAATAATGCAAGTCACACCATGCATGTGGACTTACAGTTCTTCCCAATATAGTAATGCAGGGAGCCAAATCAGGACAACAAATGGATGATTTTCATGAATGACTTTTAACTTATGTTACAACTTTGAAGAGAAACGACAGATTTCAAACGTGGCCTATATTTTCAATTTATGTTACAACTACAGTGGGGAAAACCCGTCTTCTAATTACCCTCTATGAATCTGCACAACATCGTCAACTACGACGGGTTTGAGTAAAAAAAAAAATCTACTGATAAGAAACTACTTTCATGTTACATCAAACAAAAGAAAAATTTTACATTCTAGAGTATGGAATGGTTAGAGAGGCTCTGTACACGGTTTCGTGGAACGGCTGGACTGCTTCAAGGATGCAATTCCGACGCATTTGTTCTCTGCCCAAAAAATTTATGCCAAATGCTTTGTCAAAGCCGAAACCAAATCACCTACTTTAATCAAAAGACTCATCTAGGACTGAAAATACTCTTCTGAGTCTGAAAAATTCTGCTGGAGGAGCCAACCCATAATTCAGGATTGCAGCTACCAGCACAGAGGACACCTTTGCTTCGCGAAGATAGTCAGCACCCAATATATCTCCATGATTGACCTTGATCAGTTGAGTTGGGGCGTGGTTTTGTTGATTCAAGCAGCAGCCGGTCAAATATGCACGAATAAACAATTTGGCCAACTCAAAGTTCTGCAGGCATTGATAAACATCCCATTTAGTTCATATCCGAGTCAATCTGAGGTTTTAGCACTGCAGAAAAAATCTCAATTGGACGTGTTTCGGAGCTGGTCACACGGCATGTTTCCCCTTGGCTGCAAGGTGACAACCGAGTCGTCGATGTAGGATGAGAGCTCAATCTCCCATGCTAAGGAGAACTCAAGTATATCACCTATTTCACGCTCTTCTTCGTAAGGCTAATTCCTTTGGCATTCTCCATTTCAGCATCCTTATCGGATTTTTTCTTTTCCAATTCAGCCTGTTTGCAGTTCTCTTCGTGGGCTTTCCGAAATAATCTCATAAAGTTCAACAATGTCACTATAACTGCAGCCCAATTGGTGTAGAATTAGCCAAGTAAATATCACAGAGTAAGAATAAAAAGAATCAACATCAATCCCTCGAGCATTACATAATTGTACGATCCAAACAGTTTGAAGTTGAAAACAAGGACATGCAAGTACCATGAATAACAATGTTATCACAAACTCAAGGTCATGATTCAACATCTCTTCATCCAACCATTTTCATGAAAACTAGATAAGGAGGGAATGGGAAAACTACAAAAAACTTTGGATAACAAAACAAAGTCCAGTTTACATAATTTCCCAGCCAAAGAATATTAAACACAAAGTGACCCAGCTTCTCAAGAGAGGAAAGAAATTGACTATTCATCAAGCACACATGATAATAATGATTAGGTGCAGAATTATTAACGAGAAAACAGAAACTTGGAAGAACAGAGGAGTAACTTGATTCAAATATTTTCATATCAACATGTAGTGAGAAAATAGAAGTGCAACCATAAGGAACATAGCGTACCCTGCTCAAATGGACAACGAGCCGGGTCCTCACCAAAATATAATGCAAGTGCGTCTGCATTTCTACCCTGTCCACCAAAGGACAGAATGAAAAATAAGATGAGATTGCTTCCTTTACCTGCCATCATTTAATAATACTCTAAATGGTAGTTCGATCTAGAAAATTACCACAACAGAGTACAGATTTGTCACCGACGCCGCCTCTGTCTCAGCAGTAGCAATGAATTCTTTCAACGTCTAATTTTAGGACAAAAAAGTAGAGAAAAAAAAAGGTTTTCAGGGTTCCAAATAAAATTTCTATTCAAAATAAAGAAACTATTGTTTTTGTCTTGAGCAGTTTGACAACACCAAAAAATGATTAAGAAAATGCATCAAATTTTAGCATGACATTGGTTTTTCTTATTTAAGATATTCACGTCATAGATTGGTGAAGTATGGTTCGGATCTGCATCAAAAGGTCTGCATGAGGAGTTTTTCGAATTGGAAGTTTGTGGGTAAAAAGTGAGATGTTGATCGTTGTGAATCCAATTCTCTCTGTGATACTTCAAACTCAGTGGAGATTGCAAATAATTGGTTTTCTGTCTCAGCAATAGCAATAAATTCTTTCAGCGTCTAGTTTTAGGACAATATAGCACAGAAAGAAAGAAACGGGTTGTCAAGAAGCCAAATAAAATTTCACAACTATTCAAAGTGAAGAAACTATTGTTTTTGTATTGAGCAGTTGAACAAGACCAAAAATGAAGCAAAAAAGCGCATGATAACATGACAAGATTTTTATTGGTTGAGATATCAAGTTTTACCATGACATTGGTTTTTTCTATTTAAGACATTCACGTCATAGGTCGCTATAGTATGGTCCGGATCTGCATCAAAAGGTTTTCCGAATTGGAGGTTTGTGGGTAAAAAGTGAGATGTTAATCATTGTGAATCCAATTCTTTTTACTGAGATACTTCAAATTCAGTGGAGATTGCAAATAATTGGTCTTTTTCCCGACTATTTTATAACTTATACAAATAACTAGATAGTTCAAATACATGATTGCCAGGTTCAATTTCACAGTCTAAAGTGTGATTAAACAAATTTCTGAAGTGAAGTTTTTATGTATGATTAATTCTTTCATGGGGCAAATGAAAACATGATTTTACTGTAATTATCCTTTTAAAGTAAATCAATATAGGGCAATGCATGTTACTAGAAAATACTCCAGAGACATATGACTATGGAAGAATAAAAGAAAATAGAATCAAGTTAGAATCACTATGGAAGAATAAAAGTGCAGAAAAGTTCTTGGGAAAAACATATGAAAGGGCAGATGTACCTTTCGAAAAATTTCAGAGACTGGGCCATCATTTTCAGAAGCAACAAATTCCTGCCTGACCTTTTCTAACCCCTTAATTATAGCTTGCATTTCTTCCGCTAAAGACTTCAATTGTATCTTACAGAGAGGAAAATATGATGTTAACAAAAACCAAGGACCAATGATGTATTACTATTTAAACAATCTTTCGTATGCTTGGATGGAAGGGAAAAGAAAATACATCAGAAACAAAGAGAAGAAAATTCCTTAGGAGCAAAGGAAAAGAAAAATTCTTCAGAAACAATGAGGTAGGAGGAAGACTGGGAGGCCATTACTGATAACGCTTCTTTGTGGGGTTTCTCTAAGGTTTGTGTTCTACTAGTATTACCTAAATTGAATGCAATTTGAAAATTTCTTGGAATGGTTTGAATATTACATTATCCTTGTGAATTTTTCTATTTCTTATAAATATATATATGTAAGGATATCCATAACAAAAACCAACAGAGTAATGGAGAAAAACAAAGGTTTGTACCTTGGTTGCTGCCTCTAGGCTACCCAGGTCCAAATGAAATTTAAGAAGAGCTGGTGTCTTCGAAGCAAGGACCTAACAAATTAGAGATTGCAATCCAACTTTTAGCTGAAGTATAGTAGGGTTTATCTCCTTCCAGAGATGCAACAAACTGATAAAAGATCTAGGAACGTAGTACTCAAACCATGAAATCTGATTCTCATTCATCTCTTTACATCGGAACAGCATGCATGATGACCAGAGGCCCTCTAGAGCAATATACTAAAACTTTTTCAGACGTCTTGATAGCTTCATGCTTTTAGGTATCATTTTCCTTAACCCAATGTGTTGAAGTCTATCTATTGCCTTCCCTTTAAGACTACCACTCATCACGTTTTAACATTTTTGGTTTATCGAGCACATTTACACTCTAATATGTCAACATAAATGGCAGTTCGTATGCAGATTTTCATCTCCTATCACTACTCGAGCAGGCACATTTGAAAAATCTCTTTGAAGGATCTTTTGGGGGGCTAGGGGTATGGGTCTCTTGTACATCTTCGACAAGGGTTGAACAGTTCTCACTTTTTTGTGGTTCTTCCTCTCCTCTTCGCCTGCAATTTATACTTATCTTCCTATTAATGAAAGTATCGTGAGGGAAAAAAGTATAGCTTGTTAATTTGACCAGCTTCAGTGCTTATACAGACATTTCTCACTATGAACAGGGAACAAGCTAG

mRNA sequence

ATGGAGGATTCAAGAAAGCTCCTCAGAAGATCGGTTTACAGTTTTCTTCTGAATTATCAGTTCTTCACCTCAATTGCGGCTGTTCTTGCGTTTCCGGCTCTGTTTGATGCTGCTGGGTTCCCCATATCTTCAAAATTCTTCACAATTCTCATTCAGAAGCTCTCTCAAACGGGGAGAAGCGCGACGGCGCTGTTGGTGGCGCTGCCTTTCAATATGGGTATGGCAGGCATTGAAGCTCTGTTCCAGTACAGAATAGTGGGAGTGGGGAAAACCCGTCTTCTAATTACCCTCTATGAATCTGCACAACATCGTCAACTACGACGGGGAACAAGCTAG

Coding sequence (CDS)

ATGGAGGATTCAAGAAAGCTCCTCAGAAGATCGGTTTACAGTTTTCTTCTGAATTATCAGTTCTTCACCTCAATTGCGGCTGTTCTTGCGTTTCCGGCTCTGTTTGATGCTGCTGGGTTCCCCATATCTTCAAAATTCTTCACAATTCTCATTCAGAAGCTCTCTCAAACGGGGAGAAGCGCGACGGCGCTGTTGGTGGCGCTGCCTTTCAATATGGGTATGGCAGGCATTGAAGCTCTGTTCCAGTACAGAATAGTGGGAGTGGGGAAAACCCGTCTTCTAATTACCCTCTATGAATCTGCACAACATCGTCAACTACGACGGGGAACAAGCTAG

Protein sequence

MEDSRKLLRRSVYSFLLNYQFFTSIAAVLAFPALFDAAGFPISSKFFTILIQKLSQTGRSATALLVALPFNMGMAGIEALFQYRIVGVGKTRLLITLYESAQHRQLRRGTS

Homology

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BLAST of CmaCh11G001240 vs. TAIR 10
Match: AT5G61340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.6e-05
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 12  VYSFLLNYQFFTSIAAVLAFPALFDAAGFPISSKFFTILIQKLSQTGRSATALLVALPFN 71
           +YS ++   F  S  A+++ P+         S  +  IL   L   GR++TA+ +ALP N
Sbjct: 176 IYSIIIANAFVISNLALVSSPS-------SSSGGYTNILKACLLIRGRNSTAMALALPTN 235

Query: 72  MGMAGIEALFQYRIV 87
           +G+AG+EALFQYR++
Sbjct: 236 LGLAGVEALFQYRVM 243

The following BLAST results are available for this feature:

BLAST of CmaCh11G001240 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G001240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61340.1	2.6e-05	37.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33133	OS08G0107100 PROTEIN-RELATED	coord: 58..90
None	No IPR available	PANTHER	PTHR33133:SF3	TRANSMEMBRANE PROTEIN	coord: 58..90
None	No IPR available	PANTHER	PTHR33133	OS08G0107100 PROTEIN-RELATED	coord: 5..33 coord: 33..57
None	No IPR available	PANTHER	PTHR33133:SF3	TRANSMEMBRANE PROTEIN	coord: 5..33 coord: 33..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G001240.1	CmaCh11G001240.1	mRNA