CmaCh11G001130 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G001130
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Thiol-disulfide oxidoreductase DCC isoform 1
Location	Cma_Chr11: 610556 .. 613796 (+)
RNA-Seq Expression	CmaCh11G001130
Synteny	CmaCh11G001130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTGGATTGTGGATAGCCACGCGTTTAGACATGCAAGGAGGAAGAAGGGTGAGAATCAGCTTCACCTTGGCGTAAGACTTCGAATGCAAACCACAAGAGGAGAAAAACTAGAACATGGCGTTTGGAGCAGCTGCCACTGCCACTGCCACTGCCATGGCATCTAAGTTTGCTGGAAGGATCGGTAATCCAATTCGACTATCAACTTCTCAGCTTCCCAAGCTCCGCCTCCATCGCACTCCTTTGCTTCTTCCGCAACCGTTCTCCGCATTTTGGACCAATCAACCCCGTAAGATTCCTTCGCCCTGCCTCTCTATTCGCGATCCTTTTACTTGTTTTTCCGATCAAAGATCTGCGAGTCATTTACAAGACGATAGACTTCTGTTTGAATGGCTAGAGCCAGAGAAGAGAAATGGCGAGATTAATTGCATGTTCATGTGTGCGCCTTTTGCAAATTGACCCATGGTTTTAAACCTAATGGGTTTAGGGTGGTATTTTCTAAAGATTAGTCTCATTCAATGAAATTAGCTTCTCTCGGAAAACAGCACACCATAATCTCCCTGAAGATTGATGAACAATGCAGGATTGAAATTCCAAATTTGCGCTATTAGTGAATCTGCAGTAGATCCTGTTTCTTCGAACAGAGAGCATGGAGAACGATCGCCTGAAAGTTGGAAGATCAAAATGCTCTATGATGGAGATTGCCCACTCTGCATGCGTGAGGTTGTACCGAGCCATCCTGTTTGCTTTTAAATTTAGCCTATGGAATCGCTCTTAGTAGAATTTGGCTTTTAAAATTGTTGATCAATGCCCTTATTTGTATCTAATTCTCTGTGAGTTCTTGGTATTGCCAGGTTAATATGCTGAGGGAGAGGAATAAGCGATATGGCACAATCAAGTTTGTTGACATAAGTTCAGATGATTACACCCCAGAAGAAAATCAGGGCCTTGACTACAAAACCGTATGACGTTTATTTCTGGTTTCTGAATGATTGAATATTGAGAGATCAATTATCTGAATTTTGAAAGTATTGATTGTGGTTCTTCTTCCTGTTATCTTTCTGAACATTACTTGATTGTGCCATATCATGAATTATCGATAACAGGAAGAAGAATCACAATCAATACTAACATTACTTGATTTTGAATAATACTAACACCATGAACTATCGATCCATCATTATTCTTGTTACAACCCAATTTTCGAGGTTGCGAGAAATCGAACCATGATGAAAATACGATCGTGACAGATTGGTATCAGAGCCAGACACTGGGTGGTGTGCCAGCGAGGATGCTGGCCCCTAAAGGGGGTGGATTGTGAGATCCCATATTGGTTGGAGAGGGGAACGAAACGTTCTTTATAAGGGTGTGGAAACCTCTTCCTAGCAGACGCATTTTAAAACCTTCCGAGGAAGCCTGAAAGGGAAAGTTCAAAGAGGACAAAATCTGCTAGTGGTAGGCTTGGGTGATTACAATTCTCATTTACTTCCTCAGTCTGCACTTATGAAATTCAAGGACCTATTGCAATGTGTAGTGTCTTTACAAATTTTTCTATTAAGAAAAAGTGGTTGTTATTGGACCAAAAAGAAATCAAACGAGTATTAGTTACTTTATTATATGGAAATTTTTTCAGTCTCTAAGGAACAATTATGAAGTATTACACATTCTATTGTCATTCAGGTTATGGGAAGAATCCATGCTATCCTTGCAGATGGTACCGTGGTCAGAGATGTGGAAGTAAGCTCCTTCCTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCTTGTTCTTAAATTCAGTTATAAAATCATGATTGTATTATATCATAGTTTTCTGTTGGGTCACTCGTTGTGCAACTCGATTATTGTAAGTAATACACCTTTTCCCTGCCATGTGAAGTATTTAAAATTTTGGCTTCTATCAACCTCGGGCTCGTTATTTCTCTCATCCGTTGATCTTTTAAAACATCTTGTTCAAATATTAGATGCTTGACAACCTTTAGAACACAGATTTACTCATAGATTGTCTCTGTTTTCCCCCTACCGTGCTTCTTCTGCAGGTCTTTAGAAGACTTTATGAACAAGTTGGTCTTGGATGGGTATATGCCGTTACAAAATATGAACCAGTAAGTCTTCTCGAACTTATTTGAGCTTTCATCTATCTTCTCCACCAGGCTCAATTTTTATCCCAGGACACCGATTTCTCAATGCCTTCACATTGTTGCTTATGAACAACTTATTTCCACAGGTTGGAACATTAGCCGATGCTGTATATGGTCTCTGGGCAAAATATCGTCTTCAATTGACAGGTGAAACATGACCGTGAGATTTTTAGATAATATAGTTTCTGTGCATATGAGACCCCAAATGGCTTGCGTACAGAAAGAAAAGTATAACTCCTTATGTATGCCTTACATCCATAGCAGTCTTCTTGTGCCTAGAACTTGTTGCGTGGTTAATGGATTTCCACACTCGGAACTATCCACATAAGTGCATTTGTTGACTAATTCAAAATGCTGCCTACTCCTTCAAATATCAATTCGTAGCTGCATTAACAAAACTCACGAGTCTTGAAGTTCTTGATGGTTTTACAGCATGGTTGTGATCCTATTTCTTTGTCACTATGATATTGTTTCAGGTCGGCCACCGCTAGAAGATATTCTGGTTGCACGGAAGAAAAACAAGGTAAACTTTTGTGCCTTTTATGAATTCGTTAGTTTTAACTTAACAAGAATGAGCTTCTCACAAGAAAGAAATGAAGAATTCTTCTTTGGCCTATCTTTTGTTTATGGACTTAGAAGTGGACGTGAAATTAAAATAGGAATTTGGACATCCTTTTCTCACAAGAAGCTTATCTTCGGCTTCTGGTTGAGGAATGATTGATCTTTATAAACATATACATATGCATTCGGCGTTTTCTGCACAGGATGAAGTATGTAATGACAGCAAGGCTTGCAAGGCGTAATCCTTCTACACGGGATGACAATTCTCACTTGGTCATTGGATTACCAGAAAGGGAGAGAGCTAGTAGACGTTTCTTTTACATTCCTGTATACATGGCTGCCTTATAGACTCGTAACAATACTTTATACGTAGTCCACAAAATGTCAAATGTACTCTAGTAGATATCATAGGCACTTCTTCCCAGCTCTCCTTGTACTCAACAATCTCGTTGGTATTGATTTCTGCTTCTATTTATAACATCTTGCTGATTCAAGAAGCTAATAAACTCATCTAAGAAAA

mRNA sequence

AAGTGGATTGTGGATAGCCACGCGTTTAGACATGCAAGGAGGAAGAAGGGTGAGAATCAGCTTCACCTTGGCGTAAGACTTCGAATGCAAACCACAAGAGGAGAAAAACTAGAACATGGCGTTTGGAGCAGCTGCCACTGCCACTGCCACTGCCATGGCATCTAAGTTTGCTGGAAGGATCGGTAATCCAATTCGACTATCAACTTCTCAGCTTCCCAAGCTCCGCCTCCATCGCACTCCTTTGCTTCTTCCGCAACCGTTCTCCGCATTTTGGACCAATCAACCCCGATTGAAATTCCAAATTTGCGCTATTAGTGAATCTGCAGTAGATCCTGTTTCTTCGAACAGAGAGCATGGAGAACGATCGCCTGAAAGTTGGAAGATCAAAATGCTCTATGATGGAGATTGCCCACTCTGCATGCGTGAGGTTAATATGCTGAGGGAGAGGAATAAGCGATATGGCACAATCAAGTTTGTTGACATAAGTTCAGATGATTACACCCCAGAAGAAAATCAGGGCCTTGACTACAAAACCGTTATGGGAAGAATCCATGCTATCCTTGCAGATGGTACCGTGGTCAGAGATGTGGAAGTCTTTAGAAGACTTTATGAACAAGTTGGTCTTGGATGGGTATATGCCGTTACAAAATATGAACCAGTTGGAACATTAGCCGATGCTGTATATGGTCTCTGGGCAAAATATCGTCTTCAATTGACAGGTCGGCCACCGCTAGAAGATATTCTGGTTGCACGGAAGAAAAACAAGGATGAAGTATGTAATGACAGCAAGGCTTGCAAGGCGTAATCCTTCTACACGGGATGACAATTCTCACTTGGTCATTGGATTACCAGAAAGGGAGAGAGCTAGTAGACGTTTCTTTTACATTCCTGTATACATGGCTGCCTTATAGACTCGTAACAATACTTTATACGTAGTCCACAAAATGTCAAATGTACTCTAGTAGATATCATAGGCACTTCTTCCCAGCTCTCCTTGTACTCAACAATCTCGTTGGTATTGATTTCTGCTTCTATTTATAACATCTTGCTGATTCAAGAAGCTAATAAACTCATCTAAGAAAA

Coding sequence (CDS)

ATGGCGTTTGGAGCAGCTGCCACTGCCACTGCCACTGCCATGGCATCTAAGTTTGCTGGAAGGATCGGTAATCCAATTCGACTATCAACTTCTCAGCTTCCCAAGCTCCGCCTCCATCGCACTCCTTTGCTTCTTCCGCAACCGTTCTCCGCATTTTGGACCAATCAACCCCGATTGAAATTCCAAATTTGCGCTATTAGTGAATCTGCAGTAGATCCTGTTTCTTCGAACAGAGAGCATGGAGAACGATCGCCTGAAAGTTGGAAGATCAAAATGCTCTATGATGGAGATTGCCCACTCTGCATGCGTGAGGTTAATATGCTGAGGGAGAGGAATAAGCGATATGGCACAATCAAGTTTGTTGACATAAGTTCAGATGATTACACCCCAGAAGAAAATCAGGGCCTTGACTACAAAACCGTTATGGGAAGAATCCATGCTATCCTTGCAGATGGTACCGTGGTCAGAGATGTGGAAGTCTTTAGAAGACTTTATGAACAAGTTGGTCTTGGATGGGTATATGCCGTTACAAAATATGAACCAGTTGGAACATTAGCCGATGCTGTATATGGTCTCTGGGCAAAATATCGTCTTCAATTGACAGGTCGGCCACCGCTAGAAGATATTCTGGTTGCACGGAAGAAAAACAAGGATGAAGTATGTAATGACAGCAAGGCTTGCAAGGCGTAA

Protein sequence

MAFGAAATATATAMASKFAGRIGNPIRLSTSQLPKLRLHRTPLLLPQPFSAFWTNQPRLKFQICAISESAVDPVSSNREHGERSPESWKIKMLYDGDCPLCMREVNMLRERNKRYGTIKFVDISSDDYTPEENQGLDYKTVMGRIHAILADGTVVRDVEVFRRLYEQVGLGWVYAVTKYEPVGTLADAVYGLWAKYRLQLTGRPPLEDILVARKKNKDEVCNDSKACKA

Homology

[Close]

BLAST of CmaCh11G001130 vs. ExPASy Swiss-Prot
Match: Q8W485 (Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g50100 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-66
Identity = 119/172 (69.19%), Postives = 144/172 (83.72%), Query Frame = 0


Query: 60  KFQICAISESAVDPVSS---NREHGERSPESWKIKMLYDGDCPLCMREVNMLRERNKRYG 119
           K+Q+ AI  ++ DPV +   NRE  E  P++WKIKMLYDGDCPLCMREVNML ERN+++G
Sbjct: 44  KYQVRAIQGTSTDPVITPLKNRE--EPKPQNWKIKMLYDGDCPLCMREVNMLMERNEKHG 103

Query: 120 TIKFVDISSDDYTPEENQGLDYKTVMGRIHAILADGTVVRDVEVFRRLYEQVGLGWVYAV 179
           TIKFVDISS+DY+PE+NQGLDYKTVMG+IHAI +DG VV+ VE FRRLYE+VGLGWVY +
Sbjct: 104 TIKFVDISSNDYSPEDNQGLDYKTVMGQIHAIQSDGNVVKGVEAFRRLYEEVGLGWVYTI 163

Query: 180 TKYEPVGTLADAVYGLWAKYRLQLTGRPPLEDILVARKKNKDEVCNDSKACK 229
           TK+EP+G LAD VY +WAKYRLQ+TGRP +E IL ARKK+K E C +SK CK
Sbjct: 164 TKFEPIGKLADVVYDVWAKYRLQVTGRPSIEAILEARKKDKVETCGESKNCK 213

[Close]

BLAST of CmaCh11G001130 vs. TAIR 10
Match: AT5G50100.1 (Putative thiol-disulphide oxidoreductase DCC )

HSP 1 Score: 253.8 bits (647), Expect = 1.3e-67
Identity = 119/172 (69.19%), Postives = 144/172 (83.72%), Query Frame = 0


Query: 60  KFQICAISESAVDPVSS---NREHGERSPESWKIKMLYDGDCPLCMREVNMLRERNKRYG 119
           K+Q+ AI  ++ DPV +   NRE  E  P++WKIKMLYDGDCPLCMREVNML ERN+++G
Sbjct: 44  KYQVRAIQGTSTDPVITPLKNRE--EPKPQNWKIKMLYDGDCPLCMREVNMLMERNEKHG 103

Query: 120 TIKFVDISSDDYTPEENQGLDYKTVMGRIHAILADGTVVRDVEVFRRLYEQVGLGWVYAV 179
           TIKFVDISS+DY+PE+NQGLDYKTVMG+IHAI +DG VV+ VE FRRLYE+VGLGWVY +
Sbjct: 104 TIKFVDISSNDYSPEDNQGLDYKTVMGQIHAIQSDGNVVKGVEAFRRLYEEVGLGWVYTI 163

Query: 180 TKYEPVGTLADAVYGLWAKYRLQLTGRPPLEDILVARKKNKDEVCNDSKACK 229
           TK+EP+G LAD VY +WAKYRLQ+TGRP +E IL ARKK+K E C +SK CK
Sbjct: 164 TKFEPIGKLADVVYDVWAKYRLQVTGRPSIEAILEARKKDKVETCGESKNCK 213

The following BLAST results are available for this feature:

BLAST of CmaCh11G001130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W485	1.8e-66	69.19	Uncharacterized protein At5g50100, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CmaCh11G001130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50100.1	1.3e-67	69.19	Putative thiol-disulphide oxidoreductase DCC	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007263	DCC1-like thiol-disulfide oxidoreductase family	PFAM	PF04134	DUF393	coord: 93..203 e-value: 7.2E-22 score: 78.8
IPR044691	Thioredoxin DCC1	PANTHER	PTHR34290	SI:CH73-390P7.2	coord: 41..228
None	No IPR available	CDD	cd01659	TRX_superfamily	coord: 90..138 e-value: 0.00493638 score: 33.0558
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 85..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G001130.1	CmaCh11G001130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042246	tissue regeneration
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0015035	protein-disulfide reductase activity