CmaCh11G000770 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G000770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LOB domain-containing protein
Location	Cma_Chr11: 374968 .. 375582 (+)
RNA-Seq Expression	CmaCh11G000770
Synteny	CmaCh11G000770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATTGATATTGATGTTCTTACTTTGATTTGGTTAAGGAAGATGGCATCATCAAGTTGTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCATTGGAGCCATCTCCTTCCTCCAAAGGCAAATCCATAGGCTCCAAAAGGAACTCGACGCTGCGAATGTTGACCTAATTCGGTATGCATACAACGAGATCCCTGATGGTGGAGCGAGTCATGTGGTTCAGCCAATCCCCGCCCTACGCCCGAGGGCTTTGGATCAGTATCATACAAGAATTCTTGGGAATGAAGGGTCATCAAGTGGATATTATAATCAACATCCTCCTGCTTTCCCTATGGGCTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGGGGAAGGGATGACAATATTTGA

mRNA sequence

ATGATTATTGATATTGATGTTCTTACTTTGATTTGGTTAAGGAAGATGGCATCATCAAGTTGTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCATTGGAGCCATCTCCTTCCTCCAAAGGCAAATCCATAGGCTCCAAAAGGAACTCGACGCTGCGAATGTTGACCTAATTCGGTATGCATACAACGAGATCCCTGATGGTGGAGCGAGTCATGTGGTTCAGCCAATCCCCGCCCTACGCCCGAGGGCTTTGGATCAGTATCATACAAGAATTCTTGGGAATGAAGGGTCATCAAGTGGATATTATAATCAACATCCTCCTGCTTTCCCTATGGGCTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGGGGAAGGGATGACAATATTTGA

Coding sequence (CDS)

ATGATTATTGATATTGATGTTCTTACTTTGATTTGGTTAAGGAAGATGGCATCATCAAGTTGTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCATTGGAGCCATCTCCTTCCTCCAAAGGCAAATCCATAGGCTCCAAAAGGAACTCGACGCTGCGAATGTTGACCTAATTCGGTATGCATACAACGAGATCCCTGATGGTGGAGCGAGTCATGTGGTTCAGCCAATCCCCGCCCTACGCCCGAGGGCTTTGGATCAGTATCATACAAGAATTCTTGGGAATGAAGGGTCATCAAGTGGATATTATAATCAACATCCTCCTGCTTTCCCTATGGGCTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGGGGAAGGGATGACAATATTTGA

Protein sequence

MIIDIDVLTLIWLRKMASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYAYNEIPDGGASHVVQPIPALRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYPLPWNENSSGNNINEGGRDDNI

Homology

[Close]

BLAST of CmaCh11G000770 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.1e-58
Identity = 121/189 (64.02%), Postives = 137/189 (72.49%), Query Frame = 0


Query: 17  ASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 76
           +SS+ YNSPCAACKFLRRKCMP CIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYAYNEIPDG 136
           QREDAVNSLAYEAEARVRDPVYGC+GAIS+LQRQ+HRLQKELDAAN DL  Y  +    G
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 GASHVV------QPIPALRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYP--LPWN- 196
              +VV      QP+P+ +   L+  + R+ G    +S   NQ P      Y   LPWN 
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVY-RLSG----ASPVMNQMPRGTGGSYGTFLPWNN 182

[Close]

BLAST of CmaCh11G000770 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 5.8e-48
Identity = 89/122 (72.95%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 8   LTLIWLRKMASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVT 67
           L  I L+ +  S+  NSPCAACKFLRRKC  DC+FAPYFPPEEP KFANVH+IFGASNV+
Sbjct: 22  LVAIHLKGIYMSNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVS 81

Query: 68  KLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIR 127
           K+L+E+ PHQREDAVNSLAYEAEAR++DPVYGC+GAIS LQRQ+ RLQ+EL+  N DL+R
Sbjct: 82  KILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMR 141

Query: 128 YA 130
           YA
Sbjct: 142 YA 143

[Close]

BLAST of CmaCh11G000770 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.7e-44
Identity = 84/113 (74.34%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 16  MASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLP 75
           MASSS  NSPCAACKFLRRKC P+C+FAPYFPP++PQKFANVHK+FGASNVTKLLNEL P
Sbjct: 1   MASSST-NSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHP 60

Query: 76  HQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRY 129
            QREDAVNSLAYEA+ R+RDPVYGC+G IS LQ Q+ +LQ +L  A  +L +Y
Sbjct: 61  SQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]

BLAST of CmaCh11G000770 vs. ExPASy Swiss-Prot
Match: Q32SG3 (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-42
Identity = 84/159 (52.83%), Postives = 106/159 (66.67%), Query Frame = 0


Query: 24  SPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVN 83
           SPCAACKFLRRKC PDC+FAPYFPP+ PQKF +VH++FGASNVTKLLNEL P QREDAVN
Sbjct: 32  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVN 91

Query: 84  SLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYAYNEI---------P 143
           SLAYEA+ R+RDPVYGC+G IS LQ  + +LQ++L  A  +L +Y              P
Sbjct: 92  SLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAPTGP 151

Query: 144 DGGASHVVQPIPALRPRALDQYHTRILGNEGSSSGYYNQ 174
              A  +   +P      ++  H+  LG+ G S+  + Q
Sbjct: 152 QAMAEFIGNAMPNGAHNFINIGHSAALGSLGGSASVFGQ 190

[Close]

BLAST of CmaCh11G000770 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.2e-42
Identity = 83/164 (50.61%), Postives = 107/164 (65.24%), Query Frame = 0


Query: 24  SPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVN 83
           SPCAACKFLRRKC PDC+FAPYFPP+ PQKF +VH++FGASNVTKLLNEL P+QREDAVN
Sbjct: 37  SPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96

Query: 84  SLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRY--------------A 143
           SLAYEA+ R+RDPVYGC+  IS LQR + +LQ++L  A  +L +Y               
Sbjct: 97  SLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTG 156

Query: 144 YNEIPDGGASHVVQPIPALRPRALDQYHTRILGNEGSSSGYYNQ 174
            N  P   A  +   +P      ++  H+  L + G ++  + Q
Sbjct: 157 TNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQ 200

[Close]

BLAST of CmaCh11G000770 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-59
Identity = 121/189 (64.02%), Postives = 137/189 (72.49%), Query Frame = 0


Query: 17  ASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 76
           +SS+ YNSPCAACKFLRRKCMP CIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYAYNEIPDG 136
           QREDAVNSLAYEAEARVRDPVYGC+GAIS+LQRQ+HRLQKELDAAN DL  Y  +    G
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 GASHVV------QPIPALRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYP--LPWN- 196
              +VV      QP+P+ +   L+  + R+ G    +S   NQ P      Y   LPWN 
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVY-RLSG----ASPVMNQMPRGTGGSYGTFLPWNN 182

[Close]

BLAST of CmaCh11G000770 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-59
Identity = 121/189 (64.02%), Postives = 137/189 (72.49%), Query Frame = 0


Query: 17  ASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 76
           +SS+ YNSPCAACKFLRRKCMP CIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYAYNEIPDG 136
           QREDAVNSLAYEAEARVRDPVYGC+GAIS+LQRQ+HRLQKELDAAN DL  Y  +    G
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 GASHVV------QPIPALRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYP--LPWN- 196
              +VV      QP+P+ +   L+  + R+ G    +S   NQ P      Y   LPWN 
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVY-RLSG----ASPVMNQMPRGTGGSYGTFLPWNN 182

[Close]

BLAST of CmaCh11G000770 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-59
Identity = 121/189 (64.02%), Postives = 137/189 (72.49%), Query Frame = 0


Query: 17  ASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 76
           +SS+ YNSPCAACKFLRRKCMP CIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYAYNEIPDG 136
           QREDAVNSLAYEAEARVRDPVYGC+GAIS+LQRQ+HRLQKELDAAN DL  Y  +    G
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 GASHVV------QPIPALRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYP--LPWN- 196
              +VV      QP+P+ +   L+  + R+ G    +S   NQ P      Y   LPWN 
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVY-RLSG----ASPVMNQMPRGTGGSYGTFLPWNN 182

[Close]

BLAST of CmaCh11G000770 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-59
Identity = 121/189 (64.02%), Postives = 137/189 (72.49%), Query Frame = 0


Query: 17  ASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPH 76
           +SS+ YNSPCAACKFLRRKCMP CIFAPYFPPEEP KFANVHKIFGASNVTKLLNELLPH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYAYNEIPDG 136
           QREDAVNSLAYEAEARVRDPVYGC+GAIS+LQRQ+HRLQKELDAAN DL  Y  +    G
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 GASHVV------QPIPALRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYP--LPWN- 196
              +VV      QP+P+ +   L+  + R+ G    +S   NQ P      Y   LPWN 
Sbjct: 123 APGNVVDLVFQPQPLPSQQLPPLNPVY-RLSG----ASPVMNQMPRGTGGSYGTFLPWNN 182

[Close]

BLAST of CmaCh11G000770 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-49
Identity = 89/122 (72.95%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 8   LTLIWLRKMASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVT 67
           L  I L+ +  S+  NSPCAACKFLRRKC  DC+FAPYFPPEEP KFANVH+IFGASNV+
Sbjct: 22  LVAIHLKGIYMSNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVS 81

Query: 68  KLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIR 127
           K+L+E+ PHQREDAVNSLAYEAEAR++DPVYGC+GAIS LQRQ+ RLQ+EL+  N DL+R
Sbjct: 82  KILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMR 141

Query: 128 YA 130
           YA
Sbjct: 142 YA 143

The following BLAST results are available for this feature:

BLAST of CmaCh11G000770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FML4	2.1e-58	64.02	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
Q8L8Q3	5.8e-48	72.95	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
O04479	1.7e-44	74.34	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
Q32SG3	2.1e-42	52.83	LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	[more]
A2WXT0	6.2e-42	50.61	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]

BLAST of CmaCh11G000770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63090.2	1.5e-59	64.02	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	1.5e-59	64.02	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	1.5e-59	64.02	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	1.5e-59	64.02	Lateral organ boundaries (LOB) domain family protein	[more]
AT3G27650.1	4.1e-49	72.95	LOB domain-containing protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..204
None	No IPR available	PANTHER	PTHR31301:SF82	ELONGATED PETIOLULE 1	coord: 16..203
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 16..203
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 25..121 e-value: 6.9E-42 score: 142.1
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 24..125 score: 28.050674

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G000770.1	CmaCh11G000770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane