CmaCh11G000470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G000470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Mitochondrial pyruvate carrier
Location	Cma_Chr11: 210860 .. 211354 (+)
RNA-Seq Expression	CmaCh11G000470
Synteny	CmaCh11G000470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCGTTCCGAGCGTTCCTCAACAGTCCTGTTGGCCCTAAAACAACTCATTTTTGGGGACCTGCTGCAAACTTCGGCTTCGTGGTTGCTGTATGATCTGTTAATCTGATATTACAATATCTCGAGTCTTGATTTCTCATCTTCCTTTTTCAACTTCTTCTCTGTCTGTGGTGTCTTCAATCGCAGGGGCTGGCAGATGTGAAAAAGCCAGCCGATAAGATATCCGGCAGAATGACGGCAGGTTCAAAAAATTTGTGCTGTTCATGCTCGATTTTACCAAAATAAGTTATGTTCCACGGATGAACTTTTTTGAATATAATAAACAAGAAATTGTAACGAGTGTGTTGATGATCTGCAGTTTTGTGCCTCTATTCGTTGTCAGGCATGAGATTTGGATATATGGTTCGGCCTCGGAATTATCTGCTTATGGGATGCCATGCCGCGAATGAAACTGTTCAGCTCTATCTTCTCTCCCGTTGGGCGATGGTGTGA

mRNA sequence

ATGTCTTCGTTCCGAGCGTTCCTCAACAGTCCTGTTGGCCCTAAAACAACTCATTTTTGGGGACCTGCTGCAAACTTCGGCTTCGTGGTTGCTGGGCTGGCAGATGTGAAAAAGCCAGCCGATAAGATATCCGGCAGAATGACGGCAGTTTTGTGCCTCTATTCGTTGTCAGGCATGAGATTTGGATATATGGTTCGGCCTCGGAATTATCTGCTTATGGGATGCCATGCCGCGAATGAAACTGTTCAGCTCTATCTTCTCTCCCGTTGGGCGATGGTGTGA

Coding sequence (CDS)

ATGTCTTCGTTCCGAGCGTTCCTCAACAGTCCTGTTGGCCCTAAAACAACTCATTTTTGGGGACCTGCTGCAAACTTCGGCTTCGTGGTTGCTGGGCTGGCAGATGTGAAAAAGCCAGCCGATAAGATATCCGGCAGAATGACGGCAGTTTTGTGCCTCTATTCGTTGTCAGGCATGAGATTTGGATATATGGTTCGGCCTCGGAATTATCTGCTTATGGGATGCCATGCCGCGAATGAAACTGTTCAGCTCTATCTTCTCTCCCGTTGGGCGATGGTGTGA

Protein sequence

MSSFRAFLNSPVGPKTTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRFGYMVRPRNYLLMGCHAANETVQLYLLSRWAMV

Homology

[Close]

BLAST of CmaCh11G000470 vs. ExPASy Swiss-Prot
Match: Q949R9 (Mitochondrial pyruvate carrier 1 OS=Arabidopsis thaliana OX=3702 GN=MPC1 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 2  SSFRAFLNSPVGPKTTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRF 61
          S F+AFLNSP+GPKTTHFWGP AN+GFV AGL D++KP + ISG M++ +C+YS   MRF
Sbjct: 4  SRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRF 63

Query: 62 GYMVRPRNYLLMGCHAANETVQLYLLSRWA 92
           +MV+PRNYLL+ CHA+NETVQLY LSRWA
Sbjct: 64 AWMVQPRNYLLLACHASNETVQLYQLSRWA 93

[Close]

BLAST of CmaCh11G000470 vs. ExPASy Swiss-Prot
Match: Q3ZCG2 (Mitochondrial pyruvate carrier 1 OS=Bos taurus OX=9913 GN=MPC1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 16 TTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRFGYMVRPRNYLLMGC 75
          +THFWGP AN+G  +A + D+KK  + ISGRMT  LC YSL+ MRF Y V+PRN+LL  C
Sbjct: 24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFAC 83

Query: 76 HAANETVQL 85
          HA NE  QL
Sbjct: 84 HATNEVAQL 92

[Close]

BLAST of CmaCh11G000470 vs. ExPASy Swiss-Prot
Match: Q9Y5U8 (Mitochondrial pyruvate carrier 1 OS=Homo sapiens OX=9606 GN=MPC1 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 16 TTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRFGYMVRPRNYLLMGC 75
          +THFWGP AN+G  +A + D+KK  + ISGRMT  LC YSL+ MRF Y V+PRN+LL  C
Sbjct: 24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFAC 83

Query: 76 HAANETVQL 85
          HA NE  QL
Sbjct: 84 HATNEVAQL 92

[Close]

BLAST of CmaCh11G000470 vs. ExPASy Swiss-Prot
Match: O74847 (Probable mitochondrial pyruvate carrier 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mpc1 PE=3 SV=3)

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-18
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 4   FRAFLNSPVGPK---TTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMR 63
           F  +L SP   K   +THFWGP +NFG  +A + D+KK    ISGRMT  L LYS   MR
Sbjct: 19  FITWLKSPDFRKYLCSTHFWGPLSNFGIPIAAILDLKKDPRLISGRMTGALILYSSVFMR 78

Query: 64  FGYMVRPRNYLLMGCHAANETVQ 84
           + +MV PRNYLL+GCHA N TVQ
Sbjct: 79  YAWMVSPRNYLLLGCHAFNTTVQ 101

[Close]

BLAST of CmaCh11G000470 vs. ExPASy Swiss-Prot
Match: P63030 (Mitochondrial pyruvate carrier 1 OS=Mus musculus OX=10090 GN=Mpc1 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-18
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 16 TTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRFGYMVRPRNYLLMGC 75
          +THFWGP AN+G  +A + D+KK  + ISGRMT  LC YSL+ MRF Y V+PRN+LL  C
Sbjct: 24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFAC 83

Query: 76 HAANETVQL 85
          H  NE  QL
Sbjct: 84 HVTNEVAQL 92

[Close]

BLAST of CmaCh11G000470 vs. TAIR 10
Match: AT5G20090.1 (Uncharacterised protein family (UPF0041) )

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-34
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 2  SSFRAFLNSPVGPKTTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRF 61
          S F+AFLNSP+GPKTTHFWGP AN+GFV AGL D++KP + ISG M++ +C+YS   MRF
Sbjct: 4  SRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRF 63

Query: 62 GYMVRPRNYLLMGCHAANETVQLYLLSRWA 92
           +MV+PRNYLL+ CHA+NETVQLY LSRWA
Sbjct: 64 AWMVQPRNYLLLACHASNETVQLYQLSRWA 93

[Close]

BLAST of CmaCh11G000470 vs. TAIR 10
Match: AT5G20090.2 (Uncharacterised protein family (UPF0041) )

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-34
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 2  SSFRAFLNSPVGPKTTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRF 61
          S F+AFLNSP+GPKTTHFWGP AN+GFV AGL D++KP + ISG M++ +C+YS   MRF
Sbjct: 4  SRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRF 63

Query: 62 GYMVRPRNYLLMGCHAANETVQLYLLSRWA 92
           +MV+PRNYLL+ CHA+NETVQLY LSRWA
Sbjct: 64 AWMVQPRNYLLLACHASNETVQLYQLSRWA 93

[Close]

BLAST of CmaCh11G000470 vs. TAIR 10
Match: AT5G20090.3 (Uncharacterised protein family (UPF0041) )

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-34
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 2  SSFRAFLNSPVGPKTTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRF 61
          S F+AFLNSP+GPKTTHFWGP AN+GFV AGL D++KP + ISG M++ +C+YS   MRF
Sbjct: 4  SRFQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRF 63

Query: 62 GYMVRPRNYLLMGCHAANETVQLYLLSRWA 92
           +MV+PRNYLL+ CHA+NETVQLY LSRWA
Sbjct: 64 AWMVQPRNYLLLACHASNETVQLYQLSRWA 93

[Close]

BLAST of CmaCh11G000470 vs. TAIR 10
Match: AT4G22310.1 (Uncharacterised protein family (UPF0041) )

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-10
Identity = 28/88 (31.82%), Postives = 44/88 (50.00%), Query Frame = 0


Query: 2  SSFRAFLNSPVGPKTTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRF 61
          S  +A  N P GPKT HFW P   +G  +A +AD  KP +K+S      +    +   R+
Sbjct: 4  SKLQAIWNHPAGPKTIHFWAPTFKWGISIANIADFAKPPEKLSYPQQIAVTCTGVIWSRY 63

Query: 62 GYMVRPRNYLLMGCHAANETVQLYLLSR 90
            ++ P+N+ L   + A     +Y L+R
Sbjct: 64 SMVINPKNWNLFSVNVAMAGTGIYQLAR 91

[Close]

BLAST of CmaCh11G000470 vs. TAIR 10
Match: AT4G14695.1 (Uncharacterised protein family (UPF0041) )

HSP 1 Score: 60.5 bits (145), Expect = 8.5e-10
Identity = 28/88 (31.82%), Postives = 43/88 (48.86%), Query Frame = 0


Query: 2  SSFRAFLNSPVGPKTTHFWGPAANFGFVVAGLADVKKPADKISGRMTAVLCLYSLSGMRF 61
          S  +A  N P GPKT HFW P   +G  +A +AD +KP + IS      +    +   R 
Sbjct: 4  SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPENISYLQQIAVTCTGMIWCRC 63

Query: 62 GYMVRPRNYLLMGCHAANETVQLYLLSR 90
            ++ P+N+ L   + A     +Y L+R
Sbjct: 64 STIITPKNWNLFSVNVAMAATGIYQLTR 91

The following BLAST results are available for this feature:

BLAST of CmaCh11G000470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q949R9	1.8e-33	68.89	Mitochondrial pyruvate carrier 1 OS=Arabidopsis thaliana OX=3702 GN=MPC1 PE=3 SV...	[more]
Q3ZCG2	1.3e-18	59.42	Mitochondrial pyruvate carrier 1 OS=Bos taurus OX=9913 GN=MPC1 PE=1 SV=1	[more]
Q9Y5U8	1.3e-18	59.42	Mitochondrial pyruvate carrier 1 OS=Homo sapiens OX=9606 GN=MPC1 PE=1 SV=1	[more]
O74847	2.8e-18	55.42	Probable mitochondrial pyruvate carrier 1 OS=Schizosaccharomyces pombe (strain 9...	[more]
P63030	3.7e-18	57.97	Mitochondrial pyruvate carrier 1 OS=Mus musculus OX=10090 GN=Mpc1 PE=1 SV=1	[more]

BLAST of CmaCh11G000470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20090.1	1.3e-34	68.89	Uncharacterised protein family (UPF0041)	[more]
AT5G20090.2	1.3e-34	68.89	Uncharacterised protein family (UPF0041)	[more]
AT5G20090.3	1.3e-34	68.89	Uncharacterised protein family (UPF0041)	[more]
AT4G22310.1	2.2e-10	31.82	Uncharacterised protein family (UPF0041)	[more]
AT4G14695.1	8.5e-10	31.82	Uncharacterised protein family (UPF0041)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005336	Mitochondrial pyruvate carrier	PFAM	PF03650	MPC	coord: 4..91 e-value: 1.1E-30 score: 106.0
None	No IPR available	PANTHER	PTHR14154:SF88	MITOCHONDRIAL PYRUVATE CARRIER	coord: 1..92
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G000470.1	CmaCh11G000470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006850	mitochondrial pyruvate transmembrane transport
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0050833	pyruvate transmembrane transporter activity