CmaCh10G010420 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G010420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr10: 5782772 .. 5783394 (+)
RNA-Seq ExpressionCmaCh10G010420
SyntenyCmaCh10G010420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACCACGAAGAACGCGGTCATGGCAACAATGGTGCTTGCCATGGTCAGTGCACATAGTTAGGAACCTTTGCCCTAGGCTTGAAAAAACATGCCCCCCTGAATATGGTACATTTATTATTTCTTGCTGATGGCATAAGAACTCCCATAGGATGGTTGAAACTAAATTGAGTCTATTTTCTCAGGTTGCGATGTTTATCCTCAGCCTCTGAGGGGCAGCCCTTCTGGGGGTCAGCAATTTGGGGGATACGTCGCTCTCGTCGTCGCTAGAAGCATTAGACATAAGGTCCTGAATGAAGCCTGCTACGCCTTTTTACTGATTTTACATGGGAAGAAGATGCTAAATCAAGGGTGCATAATAGTAAGTATTCAAGCTTGTATATAGGTAGCTTTTGTATTGTAAAATTCTTTCATGATGATTTTTCCCCTTGGGAGGAGGAGGAGCGAAAGTAATGGGAAACAGAACTTAACAGAGCTAATCAGTTTGGGGCCTCCTATAGAGAAAGCAACGTAGCTGGGGTATTCTTATGCTTCGTGCTGCAGTTTTGGAAGCTTTAACGGTCGTAACATCGAGTTCAATTGTACAAAAATTATTTCTCTCAATATAATCTTTTATTTCATA

mRNA sequence

ATGTTACCACGAAGAACGCGGTCATGGCAACAATGGTGCTTGCCATGGTCAGTGCACATAGTTAGGAACCTTTGCCCTAGGCTTGAAAAAACATGCCCCCCTGAATATGGTTGCGATGTTTATCCTCAGCCTCTGAGGGGCAGCCCTTCTGGGGGTCAGCAATTTGGGGGATACGTCGCTCTCGTCGTCGCTAGAAGCATTAGACATAAGGTCCTGAATGAAGCCTGCTACGCCTTTTTACTGATTTTACATGGGAAGAAGATGCTAAATCAAGGGTGCATAATAGTAAGTATTCAAGCTTGTATATAGGTAGCTTTTGTATTGTAAAATTCTTTCATGATGATTTTTCCCCTTGGGAGGAGGAGGAGCGAAAGTAATGGGAAACAGAACTTAACAGAGCTAATCAGTTTGGGGCCTCCTATAGAGAAAGCAACGTAGCTGGGGTATTCTTATGCTTCGTGCTGCAGTTTTGGAAGCTTTAACGGTCGTAACATCGAGTTCAATTGTACAAAAATTATTTCTCTCAATATAATCTTTTATTTCATA

Coding sequence (CDS)

ATGTTACCACGAAGAACGCGGTCATGGCAACAATGGTGCTTGCCATGGTCAGTGCACATAGTTAGGAACCTTTGCCCTAGGCTTGAAAAAACATGCCCCCCTGAATATGGTTGCGATGTTTATCCTCAGCCTCTGAGGGGCAGCCCTTCTGGGGGTCAGCAATTTGGGGGATACGTCGCTCTCGTCGTCGCTAGAAGCATTAGACATAAGGTCCTGAATGAAGCCTGCTACGCCTTTTTACTGATTTTACATGGGAAGAAGATGCTAAATCAAGGGTGCATAATAGTAAGTATTCAAGCTTGTATATAG

Protein sequence

MLPRRTRSWQQWCLPWSVHIVRNLCPRLEKTCPPEYGCDVYPQPLRGSPSGGQQFGGYVALVVARSIRHKVLNEACYAFLLILHGKKMLNQGCIIVSIQACI
Homology
[Close]
BLAST of CmaCh10G010420 vs. NCBI nr
Match: KAG7023911.1 (hypothetical protein SDJN02_14939, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.8 bits (286), Expect = 4.5e-22
Identity = 61/71 (85.92%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 34  PEYGCDVYPQPLRGSPSGGQQFGGYVALV--VARSIRHKVLNEACYAFLLILHGKKMLNQ 93
           PEYGC+VYPQPLRGSPS GQQFGGY ALV  VARSIRHKVLNEACYAF   LHG KM NQ
Sbjct: 25  PEYGCNVYPQPLRGSPSRGQQFGGYSALVALVARSIRHKVLNEACYAF---LHG-KMPNQ 84

Query: 94  GCIIVSIQACI 103
           GCIIVSIQACI
Sbjct: 85  GCIIVSIQACI 91

The following BLAST results are available for this feature:
BLAST of CmaCh10G010420 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G010420 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G010420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023911.14.5e-2285.92hypothetical protein SDJN02_14939, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh10G010420 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G010420.1CmaCh10G010420.1mRNA