CmaCh10G009310 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G009310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	Cma_Chr10: 4661936 .. 4665022 (+)
RNA-Seq Expression	CmaCh10G009310
Synteny	CmaCh10G009310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTAACATTCAGGCCCTTTTTTCTGGTGGAGAATTTTGGGCCTCACCAATTGTCTGGTTAAGATTCATCCAACTTCAAATCTCCCATAGCTCTCCTTTCCTCATTTCCCTCACATCCTCCCCTTCACCCTCCTTCTAATCTGCAGGTTCCTCAGATACCCATTTCAAGTCGACTCACAACGAGGGGGTCGACTTTGATTGGTGTATTTTCTCTGGTTTTAGCTTTCTAAAACGATGGTGGGAGCTTTATCCATCGTGGGTTCATCAGCGGTGGACTCTCATACTTCCCCATGTTTGTGTTTAGATGCTTTGCCCACAACGAGCAGTTCAATGGGTCGAAAGCGTTTGCCGAAACCAAAGCACTTGTATCTAAGCAGCTCGTTCGTAGATAGTGGCCGGGAGTGGCTGCTCTCGGCGGATAGGATAAACAGGAGCTCAAGGAAGCAGCACAAGAACAGAAGACTTATAGTTGTTGATGAACTTGGGGGGCAATATGAAGATACCTTTGACGATGTTAAACTGGTAAGAACAGAAGACTTGTAGAGTGTTCTCTTGCTTAAACTGGTACGATAGCTTAGAGTAATAGCATTAGCACATCTGTTCTCTTGCTTGCTAGTGCTTTTGAAAAATTAAGCTAGATACAAAGTAACTTACCCGCTGAATTATATCGATCAGTTGGTTGCTATGGACTGATTGCACGTAATGGGATTAACCTATTACTAGAATAACTTCCAATACACGGATTACAATTTTGACTGTCAAATAATCAATATACTCCTCCCAAGGTATGGAATAGCAAGTCAGATTGGTCAAACTTCGATTTTGATAAGTCAAGAACCGCATCATTCTGGCGGTTTTCAATACGTAGGAGTGAAAAACACCTTTCCATTGAATGAAATGTTGGCATGGGGTTTCTTTCAATTCCATTTTCATCTACTGAAAAGAGGGCCCGAAAGAGCTTACCAGATGCACCATCGACCGCAGCTCGACTGCGAGATTTTGACGCTAAAGTCGTTGGATGGGGTTAGGTGAGCTTCCTTTAACTTTTTTTCTTTCTTTGTTGCGTCTACGATTAGGAGGCTTAGTCAGGAAGTGGATTCGTGAACCATGTGCAGAGAGGGGGGCAAGGCTCCCATGGAGAGACAAACATCTTCACCTGTGTAGAGTAGATCATTCAACACCTGCAACACAAACTCATTTTTGACCAATTGGTCCTAGTATCATAGGCAGCTGCCATAACCACACTCGTAACTCAGTAAGATACACATGAAATACAACGGCCATCAGGTTGATGCATGGCAATGTTCTTTTAAATATCATGGGATATGCTTGAGACTTGAGTTTTCCATTGATTTTGTTCTGGTCAAGTTTAATATGATTTTGTTGTTTTTCCAGTTTCTTGAGATTTATCCTTCTCCCATCCTTTGCATACTCATTTGCCTACAAATTAATTACTGAACTGACTTTTCTCTGGCTGCAGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAGCTCTATGAAATGAACCCCCCACAGTACAGGTGGCTTTATGAGTAAGTGCCATCGTTTTTTACACATTGAGACTGGCCATTTTTCTGTGTTACAGGAACCGGGGTCAGTTTACAAATAGTTGCAGTATTTTTTGTCATGGTAGCTCAAGTTGAAGCTGTCAAATTGTTCATGCTAGTTTGGTCGTGTTCTTGAATTTTGATCCTGTTCTATTCTTCTCCAACAGTTTTCTGTTATCTAACAAGCCATCAGATGGAAAACATTTCATGCGCACTCTTGTAAAGGTACTTCTTAAAAGTTCATACCTACTTCATGACTTGTACCAATCTATGTTAGTACATGTTTTTCACTATTGGTTTTGGAGTATATTTTGGAATGATTTTGAATGATTAAATACATGTTTTTTAATGATTTTGAATATGATACGAAAGATTTTAACCATTTCAAAATCACTCCCAAACGTCCCATTGAATTCTTACTATGACTGACTTGTTCTAACGATCTCATGTTTAACACCGGCTTTAGTTTTTAGCATTTTGCTATCTCAGTAGAAAGGGAAGGCCTAAGCACACAGATGTTACAAAGTACGGTTAAATTGTGTATTTAGTTTCCATGCCTTAACTTCTAGTTTAGTTTACTTTTATAAGTTTCATTATAGTCTGTATCTTTTGATCAAACCTGCTACGAAGTAATATGAAATGCACCACATATCTACACATTCTTGAGTTATACACTCAAAAAATAGTTGTACTAAGTGTATTCAATGCTCCATAACTTGCCAAGTTACACAAAGGCTTGTGTCCAAGTGTGGTCCTCTTGCTTGACACAAAGTTAGCTAAAATGATTCCTTTTACTTCTGAATCCCAAACATTCCAGTTTGATGTTAGGACACAAAGATTTATGGTCATTTACGGCCTCGAGGCACACCTTGTGAAATAGCGTTTTACTAAACCTGAATCATCGATTTTCTAATTGATAGGAAAAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTATATGGAAAATGGGTGAAGGTATTGCTATCATTGTAATGTTCCTTCAATACAGATTTTTTTTTTGGAAGATCATTCAACAAAGTTTTCGAACATTTATTTCTTCTGTGGTGTAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTAGAATTAATGCGTGAGCGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAGAAGCTTGGCTAAGGAAGTATGGGTAATTTTGAGTTCACTCTCCCTTGTCAATTCTTCTTGTATTGCATCCTTCAATCGTGATTAGTTTGATTGTTGAGTTGCCGATTGTATTTTTAGTTCAGTGAGGCAGTCTTTTTTTAGTTGAAGATATGTAAGCAATTAATCTTTATATTATGTAGAAAAGTTTATATATTCAGACTCCATTTCGGTTATTCTGATGGTGTAGTGTAGGGCTGGGATTTTCTCAGAACTTGTGCTTCTATAAATCATGCATATTGGGATGAGATGGTACCAGAATGAGCAATAATG

mRNA sequence

TCTAACATTCAGGCCCTTTTTTCTGGTGGAGAATTTTGGGCCTCACCAATTGTCTGGTTAAGATTCATCCAACTTCAAATCTCCCATAGCTCTCCTTTCCTCATTTCCCTCACATCCTCCCCTTCACCCTCCTTCTAATCTGCAGGTTCCTCAGATACCCATTTCAAGTCGACTCACAACGAGGGGGTCGACTTTGATTGGTGTATTTTCTCTGGTTTTAGCTTTCTAAAACGATGGTGGGAGCTTTATCCATCGTGGGTTCATCAGCGGTGGACTCTCATACTTCCCCATGTTTGTGTTTAGATGCTTTGCCCACAACGAGCAGTTCAATGGGTCGAAAGCGTTTGCCGAAACCAAAGCACTTGTATCTAAGCAGCTCGTTCGTAGATAGTGGCCGGGAGTGGCTGCTCTCGGCGGATAGGATAAACAGGAGCTCAAGGAAGCAGCACAAGAACAGAAGACTTATAGTTGTTGATGAACTTGGGGGGCAATATGAAGATACCTTTGACGATGTTAAACTGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAGCTCTATGAAATGAACCCCCCACAGTACAGGTGGCTTTATGATTTTCTGTTATCTAACAAGCCATCAGATGGAAAACATTTCATGCGCACTCTTGTAAAGGAAAAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTATATGGAAAATGGGTGAAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTAGAATTAATGCGTGAGCGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAGAAGCTTGGCTAAGGAAGTATGGGTAATTTTGAGTTCACTCTCCCTTGTCAATTCTTCTTGTATTGCATCCTTCAATCGTGATTAGTTTGATTGTTGAGTTGCCGATTGTATTTTTAGTTCAGTGAGGCAGTCTTTTTTTAGTTGAAGATATGTAAGCAATTAATCTTTATATTATGTAGAAAAGTTTATATATTCAGACTCCATTTCGGTTATTCTGATGGTGTAGTGTAGGGCTGGGATTTTCTCAGAACTTGTGCTTCTATAAATCATGCATATTGGGATGAGATGGTACCAGAATGAGCAATAATG

Coding sequence (CDS)

ATGGTGGGAGCTTTATCCATCGTGGGTTCATCAGCGGTGGACTCTCATACTTCCCCATGTTTGTGTTTAGATGCTTTGCCCACAACGAGCAGTTCAATGGGTCGAAAGCGTTTGCCGAAACCAAAGCACTTGTATCTAAGCAGCTCGTTCGTAGATAGTGGCCGGGAGTGGCTGCTCTCGGCGGATAGGATAAACAGGAGCTCAAGGAAGCAGCACAAGAACAGAAGACTTATAGTTGTTGATGAACTTGGGGGGCAATATGAAGATACCTTTGACGATGTTAAACTGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAGCTCTATGAAATGAACCCCCCACAGTACAGGTGGCTTTATGATTTTCTGTTATCTAACAAGCCATCAGATGGAAAACATTTCATGCGCACTCTTGTAAAGGAAAAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTATATGGAAAATGGGTGAAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTAGAATTAATGCGTGAGCGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAGAAGCTTGGCTAA

Protein sequence

MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLSADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKLG

Homology

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BLAST of CmaCh10G009310 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.4e-65
Identity = 124/204 (60.78%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MV A  +VGS  +DS +SPCLCLDA  TT +   +K L K ++L L SSF  S   + LS
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDA-HTTGTIRRKKILGKARNLELGSSFTGSRIVFRLS 60

Query: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120
             R++R + ++ K + LIV +++ G Y+DTF DV+ QI+NYFTYKAVRTV++QLYEMNPP
Sbjct: 61  PKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMNPP 120

Query: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180
           QY W Y+ +++N+P+DGK F+R L KE Q+LAERVMITRLHLYGKW+KKC+H +IYQEIS
Sbjct: 121 QYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIKKCDHGKIYQEIS 180

Query: 181 DENVELMRERLMQTVIWPSDDTNT 205
           DEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 DENLALMRERLMETVIWPSDDTNS 202

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BLAST of CmaCh10G009310 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.2e-09
Identity = 32/105 (30.48%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 98  ILNYFTYKAVRTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMI 157
           +++Y TY+AVRTV+ QL E +PP+  WL+ F       DG+ ++  L +E+ DL  R++ 
Sbjct: 14  LISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILT 73

Query: 158 TRLHL-----------------YGKWVKKCNHAEIYQEISDENVE 186
            R HL                      ++C   E   ++S+ NVE
Sbjct: 74  VREHLAEMVADYLPEMLRAGIQQANLQQRCQQLERMTQVSEANVE 118

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BLAST of CmaCh10G009310 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.8e-08
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 93  DVKLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLA 152
           D    + +Y TY+A+RTV+ QL E NPP   WL++F  + K  DG+ ++  L  EK DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNF-SAGKVQDGEKYIEELFLEKPDLA 68

Query: 153 ERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERL 192
            R+M  R H+  + + +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHI-AEEIAEFLPEMVVTGIQQANMEKRRQHL 105

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BLAST of CmaCh10G009310 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-07
Identity = 34/99 (34.34%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 93  DVKLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLA 152
           D    + +Y TY+A+ TV+ QL E NPP   WL+ F +  K  DG+ +++ L +E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSV-GKVQDGEAYVKELFREQPDLA 68

Query: 153 ERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERL 192
            R+M  R H+  + V +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHI-AEEVAEFLPEMVRSGIQQANMEQRRQHL 105

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BLAST of CmaCh10G009310 vs. ExPASy Swiss-Prot
Match: Q55670 (RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rbcX PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05
Identity = 34/113 (30.09%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 100 NYFTYKAVRTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITR 159
           +Y TY+AV  + ++L E NPPQ  WL  +L S+   +G+ F+  L+ E ++L  R++  R
Sbjct: 18  SYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRILAVR 77

Query: 160 LHLYGKWVKKCNHAEIYQEISDENVELMR---ERLMQTVI----WPSDDTNTE 206
             +  + V           +++ N+   R   ERL +TV     +PS+ +N E
Sbjct: 78  EDI-AESVLDFLPGMTRNSLAESNIAHRRHLLERLTRTVAEVDNFPSETSNGE 129

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BLAST of CmaCh10G009310 vs. ExPASy TrEMBL
Match: A0A6J1JLL9 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111485517 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 7.6e-115
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120
           ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP
Sbjct: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180
           QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180

Query: 181 DENVELMRERLMQTVIWPSDDTNTEKLG 209
           DENVELMRERLMQTVIWPSDDTNTEKLG
Sbjct: 181 DENVELMRERLMQTVIWPSDDTNTEKLG 208

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BLAST of CmaCh10G009310 vs. ExPASy TrEMBL
Match: A0A6J1HAK7 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111461620 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 4.9e-114
Identity = 206/208 (99.04%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120
           ADRI+RSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP
Sbjct: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180
           QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180

Query: 181 DENVELMRERLMQTVIWPSDDTNTEKLG 209
           DENVELMRERLMQTVIWPSDDTNTEK+G
Sbjct: 181 DENVELMRERLMQTVIWPSDDTNTEKIG 208

[Close]

BLAST of CmaCh10G009310 vs. ExPASy TrEMBL
Match: A0A6J1EJF5 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433858 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 189/221 (85.52%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS-------------SSMGRKRLPKPKHLYLS 60
           MV  LS+VGSS VDSHTSPCLCLD LPTTS             +SMGRKRLPKPKHL LS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDSGREWLLSADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAV 120
           SSFVD+GREWLLSAD INRSSRKQHKNRRL+V+DELGGQYEDTFDDVK+QILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPP YRWLYDF+LSNKPSDGKHF+RTLVKE+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKLG 209
           KKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEK+G
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of CmaCh10G009310 vs. ExPASy TrEMBL
Match: A0A6J1HZ31 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467533 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.0e-103
Identity = 189/221 (85.52%), Postives = 200/221 (90.50%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS-------------SSMGRKRLPKPKHLYLS 60
           MV  LS+VGSS VDSHTSPCLCLD LPTTS              SMGRKRLPKPKHL LS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDSGREWLLSADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAV 120
           SSFVD+GREWLLSAD INRSSRKQHKNRRL+V+DELGGQYEDTFDDVK+QILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPP YRWLYDF+LSNKPSDGKHF+RTLVKE+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKLG 209
           KKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEK+G
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

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BLAST of CmaCh10G009310 vs. ExPASy TrEMBL
Match: A0A5D3D5P8 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00500 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.6e-101
Identity = 187/222 (84.23%), Postives = 199/222 (89.64%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS--------------SSMGRKRLPKPKHLYL 60
           MVGALS+VGSS VDSHTSPCLCLDALPTTS               SMGR+RLPKPKHL L
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDSGREWLLSADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKA 120
           SSSFVD+G EWLLS D INRSSRKQ KNRRL+VVDELGGQYED FDDVK+Q+LNYFTYKA
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKMQMLNYFTYKA 120

Query: 121 VRTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKW 180
           VRTVMNQLYEMNPPQYRWLYDF+L+NKP+DGKHF+R LVKE+QDLAERVMITRLHLYGKW
Sbjct: 121 VRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITRLHLYGKW 180

Query: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKLG 209
           VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEK+G
Sbjct: 181 VKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of CmaCh10G009310 vs. NCBI nr
Match: XP_022988213.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 422.9 bits (1086), Expect = 1.6e-114
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120
           ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP
Sbjct: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180
           QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180

Query: 181 DENVELMRERLMQTVIWPSDDTNTEKLG 209
           DENVELMRERLMQTVIWPSDDTNTEKLG
Sbjct: 181 DENVELMRERLMQTVIWPSDDTNTEKLG 208

[Close]

BLAST of CmaCh10G009310 vs. NCBI nr
Match: XP_023515990.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 420.2 bits (1079), Expect = 1.0e-113
Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTS SMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSCSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120
           ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP
Sbjct: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180
           QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180

Query: 181 DENVELMRERLMQTVIWPSDDTNTEKLG 209
           DENVELMRERLMQTVIWPSDDTNTEK+G
Sbjct: 181 DENVELMRERLMQTVIWPSDDTNTEKIG 208

[Close]

BLAST of CmaCh10G009310 vs. NCBI nr
Match: XP_022960983.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 420.2 bits (1079), Expect = 1.0e-113
Identity = 206/208 (99.04%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS
Sbjct: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60

Query: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120
           ADRI+RSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP
Sbjct: 61  ADRISRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120

Query: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180
           QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS
Sbjct: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180

Query: 181 DENVELMRERLMQTVIWPSDDTNTEKLG 209
           DENVELMRERLMQTVIWPSDDTNTEK+G
Sbjct: 181 DENVELMRERLMQTVIWPSDDTNTEKIG 208

[Close]

BLAST of CmaCh10G009310 vs. NCBI nr
Match: XP_022926878.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1 Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 385.6 bits (989), Expect = 2.8e-103
Identity = 189/221 (85.52%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS-------------SSMGRKRLPKPKHLYLS 60
           MV  LS+VGSS VDSHTSPCLCLD LPTTS             +SMGRKRLPKPKHL LS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDSGREWLLSADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAV 120
           SSFVD+GREWLLSAD INRSSRKQHKNRRL+V+DELGGQYEDTFDDVK+QILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPP YRWLYDF+LSNKPSDGKHF+RTLVKE+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKLG 209
           KKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEK+G
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of CmaCh10G009310 vs. NCBI nr
Match: KAG6588188.1 (Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 384.8 bits (987), Expect = 4.7e-103
Identity = 189/221 (85.52%), Postives = 200/221 (90.50%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTS-------------SSMGRKRLPKPKHLYLS 60
           MV  LS+VGSS VDSHTSPCLCLD LPTTS              SMGRKRLPKPKHL LS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMRKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDSGREWLLSADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAV 120
           SSFVD+GREWLLSAD INRSSRKQHKNRRL+V+DELGGQYEDTFDDVK+QILNYFTYKAV
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKMQILNYFTYKAV 120

Query: 121 RTVMNQLYEMNPPQYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWV 180
           RTVMNQLYEMNPP YRWLYDF+LSNKPSDGKHF+RTLVKE+QDLAERVMITRLHLYGKWV
Sbjct: 121 RTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQDLAERVMITRLHLYGKWV 180

Query: 181 KKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKLG 209
           KKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEK+G
Sbjct: 181 KKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of CmaCh10G009310 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-66
Identity = 124/204 (60.78%), Postives = 160/204 (78.43%), Query Frame = 0


Query: 1   MVGALSIVGSSAVDSHTSPCLCLDALPTTSSSMGRKRLPKPKHLYLSSSFVDSGREWLLS 60
           MV A  +VGS  +DS +SPCLCLDA  TT +   +K L K ++L L SSF  S   + LS
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDA-HTTGTIRRKKILGKARNLELGSSFTGSRIVFRLS 60

Query: 61  ADRINRSSRKQHKNRRLIVVDELGGQYEDTFDDVKLQILNYFTYKAVRTVMNQLYEMNPP 120
             R++R + ++ K + LIV +++ G Y+DTF DV+ QI+NYFTYKAVRTV++QLYEMNPP
Sbjct: 61  PKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMNPP 120

Query: 121 QYRWLYDFLLSNKPSDGKHFMRTLVKEKQDLAERVMITRLHLYGKWVKKCNHAEIYQEIS 180
           QY W Y+ +++N+P+DGK F+R L KE Q+LAERVMITRLHLYGKW+KKC+H +IYQEIS
Sbjct: 121 QYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIKKCDHGKIYQEIS 180

Query: 181 DENVELMRERLMQTVIWPSDDTNT 205
           DEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 DENLALMRERLMETVIWPSDDTNS 202

The following BLAST results are available for this feature:

BLAST of CmaCh10G009310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	2.4e-65	60.78	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8DIS6	9.2e-09	30.48	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]
Q44212	7.8e-08	35.35	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
O86418	3.9e-07	34.34	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q55670	2.1e-05	30.09	RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111170...	[more]

BLAST of CmaCh10G009310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JLL9	7.6e-115	100.00	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1HAK7	4.9e-114	99.04	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1EJF5	1.3e-103	85.52	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HZ31	3.0e-103	85.52	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3D5P8	3.6e-101	84.23	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CmaCh10G009310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988213.1	1.6e-114	100.00	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima]	[more]
XP_023515990.1	1.0e-113	99.04	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022960983.1	1.0e-113	99.04	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]	[more]
XP_022926878.1	2.8e-103	85.52	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1...	[more]
KAG6588188.1	4.7e-103	85.52	Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma s...	[more]

BLAST of CmaCh10G009310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	1.7e-66	60.78	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 80..205 e-value: 2.2E-49 score: 168.5
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 86..205
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 97..194 e-value: 3.2E-20 score: 72.5
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..208
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G009310.1	CmaCh10G009310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone