CmaCh10G009070 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G009070
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionAMP-binding enzyme
LocationCma_Chr10: 4502333 .. 4503950 (-)
RNA-Seq ExpressionCmaCh10G009070
SyntenyCmaCh10G009070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCAATTCCTGTTGGGAGAGAAAGAGCCTTTTGGGAACCGGTTAAAGCAACGTCGACTCCCCATTCATCCATCCGAAAATCAAGTGCACATATCGACGACACTCCATCGACCAGCAAAAGTGCAGGATGCTTGTACTTATCTGTGAGTTCGTTTTCAAAACTTATCTTTATTTTTGGGAACCATAGTAAAGAAATGGTAAGAAAACAAGCACAATTTTCAAAAATAAAATGAACCGAGGAACAGGGAGGGGCAGTTGCTCCGCTCCTTCTCTGTTCCTCTTTGCTTACCAAGTAGGAACCGAACTTTAGACAAGTCGTTCGTGACGCCCGTGGCTGTCTCGTTATGGACAATGCAAATTGCCTTAATCGTATGCCCGCCATCCTCAGCAAGCTTCGATTCCAGGACATCAAGATTGGCACCCTGGCCCCATTCGCTCTCCACGACATCAACGTTGAAGTTAAGGCGCTGCTGCTGATCAATCCAGAGCAGACTAAACTGGCCAATCAGAAAGGACACAATCCTATCTCCAGGAGACAGTGTGTTTGTAAGAGCACTCTCCCAGGCACCAGTACCTGAGACAAAAACATGAAAAATTAACGTAGGACGTTGTTGTTGTCGTTGTTTTTGTTCTTCAAACTTGAGGGAAGGAAAATTACCAGTTGTGGGAATCATAAATGGGGTTCCAGTAGTAGATTTGAAAATCTTCTTCACATCTTCAAGAAGAGTTTTTGTCAATGCAGGAATAGCAGGAGAACGGTAATCCTCATTGTTTCGGTTCATCGCCCGCAGAACTGGTTCCGGTATGTTAACCGGCCCCGGGACGAACAGATGGTTTTTTCCAGGTGCATATACATAATCCATTTTTCCTTCTCAAAATTCTGTCAGTTTTCAGCTACAGAATATAGAAAGAGTATTAGATCTGTAGTATTTCTTCATTCAGTCTTTGAACATTCAAATGTTTTGATTGCATCCCAAACCTTCGATTTTAGTCCTAACTTATCAAGATGTTCCATGTAATCGCCCAAACTCACCACTAGTAGATATTGTCTACTTTGGCCCGTTACATATCGCCATCAGCTACATGGTTTTAGAACGCATCTACTAAGCAGAGGTTTCCACACCCTTACAAGGAATGTTTCGTTCCCCTCTCCAACAAATGTGGAATCTCACAATCCACCCCCTTGAGAGCCCAGTGTCGCACTCCGCCCAGTGTCTAGCTTTAATCCATTTGTAACAGCCCAAGTCCACCGCTAGCAGATATTGTCCTCTTTGAGCTTCCCCTCAAGGTTTTTAAAACGCGTTTGCTAGAGAAAGGTTTCCACACCCTTATAAAGAATGTTTCATTCTCCTCCACAACCGATGTGGGATCTCACAATCCACTCCCTTTAAATGTCACGAGTTCCAAATCCAATTTTTTAACTTATTAGAATCAAAATCGAAAGTGTAGAAACATATTTGAAACTTAGAAGTTCAAGGTCTAAAAAAGCAAACTCAAAACTCAACCAAACCTTAAACTTTTTCACATATTCTTAAAAGTTGAAGTGTTTTTTTTCTTACATAGTACTTCATCTTTCAACATGTTCTTAAAGAAAACAGCACTCGTAGGGGATGA

mRNA sequence

ATGATTCCAATTCCTGTTGGGAGAGAAAGAGCCTTTTGGGAACCGGTTAAAGCAACGTCGACTCCCCATTCATCCATCCGAAAATCAAGTGCACATATCGACGACACTCCATCGACCAGCAAAAGTGCAGGATGCTTGTACTTATCTGTGAGTTCGTTTTCAAAACTTATCTTTATTTTTGGGAACCATAGTAAAGAAATGGAACCGAACTTTAGACAAGTCGTTCGTGACGCCCGTGGCTGTCTCGTTATGGACAATGCAAATTGCCTTAATCGTATGCCCGCCATCCTCAGCAAGCTTCGATTCCAGGACATCAAGATTGGCACCCTGGCCCCATTCGCTCTCCACGACATCAACGTTGAAGTTAAGGCGCTGCTGCTGATCAATCCAGAGCAGACTAAACTGGCCAATCAGAAAGGACACAATCCTATCTCCAGGAGACAGTGTGTTTAACTGGTTCCGTACTTCATCTTTCAACATGTTCTTAAAGAAAACAGCACTCGTAGGGGATGA

Coding sequence (CDS)

ATGATTCCAATTCCTGTTGGGAGAGAAAGAGCCTTTTGGGAACCGGTTAAAGCAACGTCGACTCCCCATTCATCCATCCGAAAATCAAGTGCACATATCGACGACACTCCATCGACCAGCAAAAGTGCAGGATGCTTGTACTTATCTGTGAGTTCGTTTTCAAAACTTATCTTTATTTTTGGGAACCATAGTAAAGAAATGGAACCGAACTTTAGACAAGTCGTTCGTGACGCCCGTGGCTGTCTCGTTATGGACAATGCAAATTGCCTTAATCGTATGCCCGCCATCCTCAGCAAGCTTCGATTCCAGGACATCAAGATTGGCACCCTGGCCCCATTCGCTCTCCACGACATCAACGTTGAAGTTAAGGCGCTGCTGCTGATCAATCCAGAGCAGACTAAACTGGCCAATCAGAAAGGACACAATCCTATCTCCAGGAGACAGTGTGTTTAA

Protein sequence

MIPIPVGRERAFWEPVKATSTPHSSIRKSSAHIDDTPSTSKSAGCLYLSVSSFSKLIFIFGNHSKEMEPNFRQVVRDARGCLVMDNANCLNRMPAILSKLRFQDIKIGTLAPFALHDINVEVKALLLINPEQTKLANQKGHNPISRRQCV
Homology
[Close]
BLAST of CmaCh10G009070 vs. ExPASy TrEMBL
Match: J3MU76 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-24
Identity = 69/169 (40.83%), Postives = 103/169 (60.95%), Query Frame = 0 

Query: 2   IPIPVGRERAFWEPVKATSTPHSSIRKSSAHIDDTPSTSKSAGCLYLSVSSFSKLIFIFG 61
           +P PVG + AF +PV ATSTPHSS+RKS+AHIDDTPSTS SAGCL LS  +  +   +  
Sbjct: 1   MPSPVGSDSAFCDPVSATSTPHSSMRKSTAHIDDTPSTSSSAGCLCLSERAIDRSPCVRD 60

Query: 62  NHSKEMEPNFR--------------------QVVRDARGCLVMDNANCLNRMPAILSKLR 121
                 +   R                    ++V DA G LV+D+A+ L+ +  + ++L 
Sbjct: 61  QGKVHQDSFVRSGGARRRGVWLVTEELADGGEIVGDAGGGLVVDDADGLDGVGRVAAELV 120

Query: 122 FQDIKIGTLAPFALHDINVEVKALLLINPEQTKLANQKGHNPISRRQCV 151
            +  ++G LAP ALH +++EV+ALLL++P+Q +L +Q+ H+ + RRQ V
Sbjct: 121 VERGEVGALAPVALHHVHLEVEALLLVDPQQAELPDQERHDAVPRRQRV 169

[Close]
BLAST of CmaCh10G009070 vs. ExPASy TrEMBL
Match: A0A5A7Q9H3 (AMP-binding enzyme OS=Striga asiatica OX=4170 GN=STAS_17769 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.9e-23
Identity = 69/136 (50.74%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 2   IPIPVGRERAFWEPVKATSTPHSSIRKSSAHIDDTPSTSKSAGCLYLSVSSFSKLIFIFG 61
           IPIPVG E AF EPVKATSTPHSSIRKSSA I+DTPST  +AG                 
Sbjct: 55  IPIPVGSESAFCEPVKATSTPHSSIRKSSAQIEDTPSTRSNAG----------------- 114

Query: 62  NHSKEMEPNFRQVVRDARGCLVMDNANCLNRMPAILSKLRFQDIKIGTLAPFALHDINVE 121
                      +VV DA  CLV+DNA+ LN +  +L   R Q I+I T APF L +I+VE
Sbjct: 115 ----------GEVVSDASCCLVVDNADGLNSVGTVLGYFRGQQIEICTSAPFTLDNIDVE 163

Query: 122 VKALLLINPEQTKLAN 138
            +ALLL++P+QT+L N
Sbjct: 175 FEALLLVDPQQTELTN 163

[Close]
BLAST of CmaCh10G009070 vs. ExPASy TrEMBL
Match: A0A444DIL6 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00039226 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.6e-11
Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 66  EMEPNFRQVVRDARGCLVMDNANCLNRMPAILSKLRFQDIKIGTLAPFALHDINVEVKAL 125
           E  P+  Q++ D+   L++++AN L+ M  +  +LR Q IKIGT  P AL+DIN EV+AL
Sbjct: 4   EQLPDGCQIIGDSGCGLIVNDANSLDGMRPVSFQLRCQGIKIGTSPPLALYDINPEVEAL 63

Query: 126 LLINPEQTKLANQKGHNPISRRQCV 151
           LLI+PE+ +L +++G +PI+RR+ V
Sbjct: 64  LLIDPEKAELPDEEGDDPITRRESV 88

[Close]
BLAST of CmaCh10G009070 vs. ExPASy TrEMBL
Match: A0A0A9DWG1 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.3e-09
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 2  IPIPVGRERAFWEPVKATSTPHSSIRKSSAHIDDTPSTSKSAGCLYLSVS 52
          +P PVG + AF +PV ATSTPHSS+RKSSA +DDTPSTS SAGC Y S S
Sbjct: 1  MPSPVGSDSAFCDPVSATSTPHSSMRKSSAQMDDTPSTSSSAGCRYASRS 50

[Close]
BLAST of CmaCh10G009070 vs. ExPASy TrEMBL
Match: A0A0A9DR56 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 2  IPIPVGRERAFWEPVKATSTPHSSIRKSSAHIDDTPSTSKSAGCLYLSVS 52
          +P PVG + AF +PV ATSTPHSS+RKSSA +DDTPST+ SAGC Y S S
Sbjct: 1  MPSPVGSDSAFCDPVSATSTPHSSMRKSSAQMDDTPSTNSSAGCRYASRS 50

[Close]
BLAST of CmaCh10G009070 vs. NCBI nr
Match: GER41067.1 (AMP-binding enzyme [Striga asiatica])

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-22
Identity = 69/136 (50.74%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 2   IPIPVGRERAFWEPVKATSTPHSSIRKSSAHIDDTPSTSKSAGCLYLSVSSFSKLIFIFG 61
           IPIPVG E AF EPVKATSTPHSSIRKSSA I+DTPST  +AG                 
Sbjct: 55  IPIPVGSESAFCEPVKATSTPHSSIRKSSAQIEDTPSTRSNAG----------------- 114

Query: 62  NHSKEMEPNFRQVVRDARGCLVMDNANCLNRMPAILSKLRFQDIKIGTLAPFALHDINVE 121
                      +VV DA  CLV+DNA+ LN +  +L   R Q I+I T APF L +I+VE
Sbjct: 115 ----------GEVVSDASCCLVVDNADGLNSVGTVLGYFRGQQIEICTSAPFTLDNIDVE 163

Query: 122 VKALLLINPEQTKLAN 138
            +ALLL++P+QT+L N
Sbjct: 175 FEALLLVDPQQTELTN 163

[Close]
BLAST of CmaCh10G009070 vs. NCBI nr
Match: RWV97957.1 (hypothetical protein GW17_00039226 [Ensete ventricosum] >RZS23367.1 hypothetical protein BHM03_00056355 [Ensete ventricosum])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 66  EMEPNFRQVVRDARGCLVMDNANCLNRMPAILSKLRFQDIKIGTLAPFALHDINVEVKAL 125
           E  P+  Q++ D+   L++++AN L+ M  +  +LR Q IKIGT  P AL+DIN EV+AL
Sbjct: 4   EQLPDGCQIIGDSGCGLIVNDANSLDGMRPVSFQLRCQGIKIGTSPPLALYDINPEVEAL 63

Query: 126 LLINPEQTKLANQKGHNPISRRQCV 151
           LLI+PE+ +L +++G +PI+RR+ V
Sbjct: 64  LLIDPEKAELPDEEGDDPITRRESV 88

[Close]
BLAST of CmaCh10G009070 vs. NCBI nr
Match: RWW82651.1 (hypothetical protein BHE74_00008879 [Ensete ventricosum])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 66  EMEPNFRQVVRDARGCLVMDNANCLNRMPAILSKLRFQDIKIGTLAPFALHDINVEVKAL 125
           E  P+  Q++ D+   L++++AN L+ M  +  +LR Q IKIGT  P AL+DIN EV+AL
Sbjct: 4   EQLPDGCQIIGDSGCGLIVNDANSLDGMRPVSFQLRCQGIKIGTSPPLALYDINPEVEAL 63

Query: 126 LLINPEQTKLANQKGHNPISRRQCV 151
           LLI+PE+ +L +++G +PI+RR+ V
Sbjct: 64  LLIDPEKAELPDEEGDDPITRRESV 88

The following BLAST results are available for this feature:
BLAST of CmaCh10G009070 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G009070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
J3MU762.0e-2440.83Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
A0A5A7Q9H34.9e-2350.74AMP-binding enzyme OS=Striga asiatica OX=4170 GN=STAS_17769 PE=4 SV=1[more]
A0A444DIL65.6e-1145.88Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00039226 PE=4 SV=1[more]
A0A0A9DWG15.3e-0970.00Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9DR561.2e-0868.00Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CmaCh10G009070 vs. NCBI nr
Match NameE-valueIdentityDescription
GER41067.11.0e-2250.74AMP-binding enzyme [Striga asiatica][more]
RWV97957.11.2e-1045.88hypothetical protein GW17_00039226 [Ensete ventricosum] >RZS23367.1 hypothetical... [more]
RWW82651.11.2e-1045.88hypothetical protein BHE74_00008879 [Ensete ventricosum][more]
BLAST of CmaCh10G009070 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G009070.1CmaCh10G009070.1mRNA