CmaCh10G008930 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G008930
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr10: 4423979 .. 4424251 (-)
RNA-Seq ExpressionCmaCh10G008930
SyntenyCmaCh10G008930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGCCGCGACACCAACGTCAGCCCTCACAAGTTCTTCCGCCGGAGCTGATCTCCGGTGTGGATCCGTCTCAGATCTTGGACTTCGGCCAGGCAGTCGCCAGAACAGTTTCCGGCCAACCCCATAAGGCAACTGAAGCTGCTACGAATGTGGCCACCGCCGCTGCGGTCCTTCAGCGGTCCAAGAATCCCGGTGGTCAGGAGGGCTCCGGCTCCGGCTCCGGCTCCGGCCACTTCCCTCAGCTCCCGAAAACGCCGCAGTCTACTTAA

mRNA sequence

ATGCCTCGGCCGCGACACCAACGTCAGCCCTCACAAGTTCTTCCGCCGGAGCTGATCTCCGGTGTGGATCCGTCTCAGATCTTGGACTTCGGCCAGGCAGTCGCCAGAACAGTTTCCGGCCAACCCCATAAGGCAACTGAAGCTGCTACGAATGTGGCCACCGCCGCTGCGGTCCTTCAGCGGTCCAAGAATCCCGGTGGTCAGGAGGGCTCCGGCTCCGGCTCCGGCTCCGGCCACTTCCCTCAGCTCCCGAAAACGCCGCAGTCTACTTAA

Coding sequence (CDS)

ATGCCTCGGCCGCGACACCAACGTCAGCCCTCACAAGTTCTTCCGCCGGAGCTGATCTCCGGTGTGGATCCGTCTCAGATCTTGGACTTCGGCCAGGCAGTCGCCAGAACAGTTTCCGGCCAACCCCATAAGGCAACTGAAGCTGCTACGAATGTGGCCACCGCCGCTGCGGTCCTTCAGCGGTCCAAGAATCCCGGTGGTCAGGAGGGCTCCGGCTCCGGCTCCGGCTCCGGCCACTTCCCTCAGCTCCCGAAAACGCCGCAGTCTACTTAA

Protein sequence

MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAAAVLQRSKNPGGQEGSGSGSGSGHFPQLPKTPQST
Homology
BLAST of CmaCh10G008930 vs. ExPASy TrEMBL
Match: A0A0A0M0A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.1e-21
Identity = 63/93 (67.74%), Postives = 68/93 (73.12%), Query Frame = 0

Query: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAAA--- 60
          MPRPRHQRQ SQVLPP+ IS  DPSQILDF   VA  VSGQPH+ ++A  N A AAA   
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 VLQRSKNPGGQEGSGSGSGSGHFPQLPKTPQST 91
          VLQRSKNP GQE    GSG+GHF QLPKT  ST
Sbjct: 61 VLQRSKNPAGQE----GSGAGHFSQLPKTAPST 89

BLAST of CmaCh10G008930 vs. NCBI nr
Match: KAG6590166.1 (hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-35
Identity = 85/90 (94.44%), Postives = 85/90 (94.44%), Query Frame = 0

Query: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAAAVLQ 60
          MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAAAVLQ
Sbjct: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAAAVLQ 60

Query: 61 RSKNPGGQEGSGSGSGSGHFPQLPKTPQST 91
          RSK  GGQE  GSGSGSGHFPQLPKTP ST
Sbjct: 61 RSKTSGGQE--GSGSGSGHFPQLPKTPPST 88

BLAST of CmaCh10G008930 vs. NCBI nr
Match: KGN66547.1 (hypothetical protein Csa_007065 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 63/93 (67.74%), Postives = 68/93 (73.12%), Query Frame = 0

Query: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAAA--- 60
          MPRPRHQRQ SQVLPP+ IS  DPSQILDF   VA  VSGQPH+ ++A  N A AAA   
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 VLQRSKNPGGQEGSGSGSGSGHFPQLPKTPQST 91
          VLQRSKNP GQE    GSG+GHF QLPKT  ST
Sbjct: 61 VLQRSKNPAGQE----GSGAGHFSQLPKTAPST 89

BLAST of CmaCh10G008930 vs. NCBI nr
Match: KAG6588222.1 (hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-15
Identity = 57/95 (60.00%), Postives = 62/95 (65.26%), Query Frame = 0

Query: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAAA--- 60
          MPRPRH RQPSQVLPPELISG DPSQILDF + VA   SGQPH+A   A   A AAA   
Sbjct: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFERPVAGAFSGQPHQAAPEAAAAAAAAANAA 60

Query: 61 ---VLQRSKNPGGQEGSGSGSGSGHFPQLPKTPQS 90
             V+Q+SK    QE     SG+  FPQL KTP S
Sbjct: 61 ASTVIQQSKIAASQE----VSGAEQFPQLTKTPPS 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M0A16.1e-2167.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6590166.11.8e-3594.44hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN66547.11.3e-2067.74hypothetical protein Csa_007065 [Cucumis sativus][more]
KAG6588222.14.7e-1560.00hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G008930.1CmaCh10G008930.1mRNA