CmaCh10G006060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G006060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	serine-rich protein-related
Location	Cma_Chr10: 2805998 .. 2806724 (+)
RNA-Seq Expression	CmaCh10G006060
Synteny	CmaCh10G006060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTACCCACATGATGTGCCGCCTCGGAGAGAGTTTTTGGATGTTCAATGCAATTGGGTCCTCTTGCAGACGGCGGCCACGGCGGTTGAGAGTGGCAGTGTCGAGTCGGTGAAAAAGCGGTGCTTGTGCTCGCCGACAAGGCACCCTGGGTCGTTTCGTTGCAGGCTGCACCGAAGTGAGTACGTTTGGGTTGGGAGGCCGCGGATGGTGAAAAATGGACCGGCGGCGAGTAAAAAGGTCTCTCTGTTTAACGATGAGTGATTGGTGTTTGAATCGCTGGAATGTAATTGCAGAAGAAAATGAATAGCAGTGGCTTTTAATATGCTTGATGTTTTTAAAATTTTATTTTTTCGACTAATTTCCCATATGATGTGATTCCACTTGAAGTTCAGAAAAATAAGAAAATTTAAATTATTTCTGTGCTTATAAAATATATATATACCCAAGGCAAAATTTTAGATTTATTTTTAGTTCAGAATGTTTAATTCCCAAATGGGTAAGAAACTCTTCACACATATGAACACAAAAGCAGGAGTAAAGCACATAATCTAATCTCATTATTGCAATGGCAACAACTGCCTACTACTACACATAACAAATGAACTTTAACTTGTGTAAGAATCTGACTACATTGTAAAAGCATAGTTTATAAGTAATAATCCACAAAGATGTTCGGAACTTACTTTTTCTTTTAAATCTCTAGCATATGGACAACGGAGCTTAA

mRNA sequence

ATGTGTTACCCACATGATGTGCCGCCTCGGAGAGAGTTTTTGGATGTTCAATGCAATTGGGTCCTCTTGCAGACGGCGGCCACGGCGGTTGAGAGTGGCAGTGTCGAGTCGGTGAAAAAGCGGTGCTTGTGCTCGCCGACAAGGCACCCTGGGTCGTTTCGTTGCAGGCTGCACCGAAGTGAGTACGTTTGGGTTGGGAGGCCGCGGATGGTGAAAAATGGACCGGCGGCGAGTAAAAAGCATATGGACAACGGAGCTTAA

Coding sequence (CDS)

ATGTGTTACCCACATGATGTGCCGCCTCGGAGAGAGTTTTTGGATGTTCAATGCAATTGGGTCCTCTTGCAGACGGCGGCCACGGCGGTTGAGAGTGGCAGTGTCGAGTCGGTGAAAAAGCGGTGCTTGTGCTCGCCGACAAGGCACCCTGGGTCGTTTCGTTGCAGGCTGCACCGAAGTGAGTACGTTTGGGTTGGGAGGCCGCGGATGGTGAAAAATGGACCGGCGGCGAGTAAAAAGCATATGGACAACGGAGCTTAA

Protein sequence

MCYPHDVPPRREFLDVQCNWVLLQTAATAVESGSVESVKKRCLCSPTRHPGSFRCRLHRSEYVWVGRPRMVKNGPAASKKHMDNGA

Homology

[Close]

BLAST of CmaCh10G006060 vs. ExPASy TrEMBL
Match: A0A0A0LZG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.3e-24
Identity = 56/84 (66.67%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT-----AATAVESGSVESVKKRCLCSPTRHPGSFRC 60
          MCYPH    RR+F  +QCNWVL QT     A  A+ES   ES K+RCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRPRMVKNGPAASK 80
          RLHR+EYVWV R R VKNGPA  K
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGK 84

[Close]

BLAST of CmaCh10G006060 vs. ExPASy TrEMBL
Match: A0A5A7TXE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001380 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.9e-22
Identity = 54/84 (64.29%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT-----AATAVESGSVESVKKRCLCSPTRHPGSFRC 60
          MCYPH   PR +FL  QCNWVL QT        A+ES   ES K+RCLCSPT HPGSFRC
Sbjct: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60

Query: 61 RLHRSEYVWVGRPRMVKNGPAASK 80
          RLHRSEYVWV R R VKN  A  K
Sbjct: 61 RLHRSEYVWVARRRTVKNVSAEVK 84

[Close]

BLAST of CmaCh10G006060 vs. ExPASy TrEMBL
Match: B9ILL3 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G078900 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 40/85 (47.06%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQ----------TAATAVESGSVESVKKRCLCSPTRHP 60
          MC+P  VP     L V   W++LQ          T   A  S +V    K+CLCSPTRHP
Sbjct: 1  MCHPPGVPWVSRNLVVYRRWLVLQAVETETGHAPTEVAATGSSAVAGSIKKCLCSPTRHP 60

Query: 61 GSFRCRLHRSEYVWVGRPRMVKNGP 76
          GSFRCR HRS+YVW GR    K  P
Sbjct: 61 GSFRCRHHRSDYVWGGRITRRKQPP 85

[Close]

BLAST of CmaCh10G006060 vs. ExPASy TrEMBL
Match: A0A5N5J6W7 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028182 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-10
Identity = 41/78 (52.56%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAVE-----------SGSVESVKKRCLCSPTRH 60
          MC+P  VP     L V   W++LQ A T  E           SG   S KK CLCSPTRH
Sbjct: 1  MCHP-GVPRASRNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKK-CLCSPTRH 60

Query: 61 PGSFRCRLHRSEYVWVGR 68
          PGSFRCR HRS+YVW GR
Sbjct: 61 PGSFRCRHHRSDYVWGGR 76

[Close]

BLAST of CmaCh10G006060 vs. ExPASy TrEMBL
Match: A0A6N2KPX4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113725 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.7e-10
Identity = 41/78 (52.56%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAVE-----------SGSVESVKKRCLCSPTRH 60
          MC+P  VP     L V   W++LQ A T  E           SG   S KK CLCSPTRH
Sbjct: 1  MCHP-GVPRASRNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKK-CLCSPTRH 60

Query: 61 PGSFRCRLHRSEYVWVGR 68
          PGSFRCR HRS+YVW GR
Sbjct: 61 PGSFRCRHHRSDYVWGGR 76

[Close]

BLAST of CmaCh10G006060 vs. NCBI nr
Match: KAG6589902.1 (hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAVESGSVESVKKRCLCSPTRHPGSFRCRLHRS 60
          MCYPHDVPPRREFL+VQCNWVLLQTAATAVESG  ESVKKRCLCSPTRHPGSFRCRLHRS
Sbjct: 1  MCYPHDVPPRREFLNVQCNWVLLQTAATAVESGGGESVKKRCLCSPTRHPGSFRCRLHRS 60

Query: 61 EYVWVGRPRMVKNGPAASKK 81
          EYVWVGRPRMVK+GPAASKK
Sbjct: 61 EYVWVGRPRMVKSGPAASKK 80

[Close]

BLAST of CmaCh10G006060 vs. NCBI nr
Match: KGN65356.1 (hypothetical protein Csa_020011 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 6.9e-24
Identity = 56/84 (66.67%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT-----AATAVESGSVESVKKRCLCSPTRHPGSFRC 60
          MCYPH    RR+F  +QCNWVL QT     A  A+ES   ES K+RCLCSPTRHPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVGRPRMVKNGPAASK 80
          RLHR+EYVWV R R VKNGPA  K
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGK 84

[Close]

BLAST of CmaCh10G006060 vs. NCBI nr
Match: KAA0046597.1 (hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 54/84 (64.29%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQT-----AATAVESGSVESVKKRCLCSPTRHPGSFRC 60
          MCYPH   PR +FL  QCNWVL QT        A+ES   ES K+RCLCSPT HPGSFRC
Sbjct: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60

Query: 61 RLHRSEYVWVGRPRMVKNGPAASK 80
          RLHRSEYVWV R R VKN  A  K
Sbjct: 61 RLHRSEYVWVARRRTVKNVSAEVK 84

[Close]

BLAST of CmaCh10G006060 vs. NCBI nr
Match: PNS93260.1 (hypothetical protein POPTR_018G078900 [Populus trichocarpa])

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 40/85 (47.06%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQ----------TAATAVESGSVESVKKRCLCSPTRHP 60
          MC+P  VP     L V   W++LQ          T   A  S +V    K+CLCSPTRHP
Sbjct: 1  MCHPPGVPWVSRNLVVYRRWLVLQAVETETGHAPTEVAATGSSAVAGSIKKCLCSPTRHP 60

Query: 61 GSFRCRLHRSEYVWVGRPRMVKNGP 76
          GSFRCR HRS+YVW GR    K  P
Sbjct: 61 GSFRCRHHRSDYVWGGRITRRKQPP 85

[Close]

BLAST of CmaCh10G006060 vs. NCBI nr
Match: KAB5514276.1 (hypothetical protein DKX38_028182 [Salix brachista])

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-10
Identity = 41/78 (52.56%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 1  MCYPHDVPPRREFLDVQCNWVLLQTAATAVE-----------SGSVESVKKRCLCSPTRH 60
          MC+P  VP     L V   W++LQ A T  E           SG   S KK CLCSPTRH
Sbjct: 1  MCHP-GVPRASRNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKK-CLCSPTRH 60

Query: 61 PGSFRCRLHRSEYVWVGR 68
          PGSFRCR HRS+YVW GR
Sbjct: 61 PGSFRCRHHRSDYVWGGR 76

[Close]

BLAST of CmaCh10G006060 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 4.8e-07
Identity = 26/73 (35.62%), Postives = 36/73 (49.32%), Query Frame = 0


Query: 1  MCY----PHDVPPRREFLDVQCNWVLLQTAATAV----ESGSVESVKKRCLCSPTRHPGS 60
          MCY    P  +PP     +     V + T   A       G     KK+C+CSP++HP S
Sbjct: 1  MCYKILLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FRCRLHRSEYVWV 66
          F+CR H+ EY W+
Sbjct: 61 FKCRYHQHEYQWL 73

[Close]

BLAST of CmaCh10G006060 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 3.1e-06
Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 28 TAVESGS------VESVKKRCLCSPTRHPGSFRCRLHRS 61
          +AVE GS          K  CLCSPT HPGSFRCR+HRS
Sbjct: 24 SAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of CmaCh10G006060 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 48.5 bits (114), Expect = 3.1e-06
Identity = 23/39 (58.97%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 28 TAVESGS------VESVKKRCLCSPTRHPGSFRCRLHRS 61
          +AVE GS          K  CLCSPT HPGSFRCR+HRS
Sbjct: 24 SAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of CmaCh10G006060 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05
Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 37 SVKKRCLCSPTRHPGSFRCRLHR 60
          SV++ CLC+PT HPGSFRCR HR
Sbjct: 60 SVRQNCLCAPTTHPGSFRCRYHR 82

[Close]

BLAST of CmaCh10G006060 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05
Identity = 18/32 (56.25%), Postives = 21/32 (65.62%), Query Frame = 0


Query: 28 TAVESGSVESVKKRCLCSPTRHPGSFRCRLHR 60
          + V   S    K++CLCSPT HPGSFRC  HR
Sbjct: 57 SVVTVSSNHQTKRKCLCSPTTHPGSFRCSFHR 88

The following BLAST results are available for this feature:

BLAST of CmaCh10G006060 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh10G006060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZG6	3.3e-24	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1	[more]
A0A5A7TXE6	6.9e-22	64.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
B9ILL3	1.2e-10	47.06	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G078900 PE=4 ...	[more]
A0A5N5J6W7	2.7e-10	52.56	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028182 PE=4 SV=1	[more]
A0A6N2KPX4	2.7e-10	52.56	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113725 PE=4 SV=...	[more]

BLAST of CmaCh10G006060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589902.1	1.7e-38	95.00	hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN65356.1	6.9e-24	66.67	hypothetical protein Csa_020011 [Cucumis sativus]	[more]
KAA0046597.1	1.4e-21	64.29	hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa]	[more]
PNS93260.1	2.5e-10	47.06	hypothetical protein POPTR_018G078900 [Populus trichocarpa]	[more]
KAB5514276.1	5.6e-10	52.56	hypothetical protein DKX38_028182 [Salix brachista]	[more]

BLAST of CmaCh10G006060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52342.1	4.8e-07	35.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.1	3.1e-06	58.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	3.1e-06	58.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13227.1	2.6e-05	73.91	serine-rich protein-related	[more]
AT5G20370.1	2.6e-05	56.25	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132:SF72	OS01G0778900 PROTEIN	coord: 24..67
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 24..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G006060.1	CmaCh10G006060.1	mRNA