CmaCh10G005740 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G005740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	GTP-binding nuclear protein
Location	Cma_Chr10: 2628661 .. 2631050 (-)
RNA-Seq Expression	CmaCh10G005740
Synteny	CmaCh10G005740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTTCATCGGTTCGATTACTTTTCTGAGTATATTCTAATCTCTCTTCTTTTTTTTTTTTGCTTCTATTTCATGCTGAATTTCATAGGCTTTGCCAGACCAAAAGACTGTTGATTACCCGAGCTTCAAGCTTGTGATTGTTGGCGATGGCGGCACTGGTATTTCCTTGTTTCTGAGTTTTGTTTTACAATAATTGTCTGCCGCGACATCCTGCTGTATGTATCACATCTTAGAGTTGGATATTTAGTCGATGCAATGGGGGAATGGTTCATTTCTGTAGGTCTTATAGTTTTGAATCGATGTGAAATGGAAAATAAAAAAAAAAATACTTGTTTTGAATTCATGAGATTGGACAGTAGTAACAGTTGATCAACGAGGACAATTGTTCTTTTCTGTAGACGTTATTGTTTTGAATAGATGATCAATCATAATGTCAGCCTTTTCTATTCAATGGTATATGTTCTACAAGATCTAAATTAGTTTAATACACACGAGTCTCTCTTAAAGTTATTGGCAGCATTGTCAAAGAAAGATGGTTGCTTCTTTTGATGTGTTGTATTTCTATCTTTTGTTCTCTCAACTCAATCATGTCTCTACCGCTTTGTCTTGTATTCATGGGCGCTAATGATTGGTTAGCTTTTTACTAGCTGCGAAATTAGATTAGAATTGTACTAATTAGAAGGAAAGCTTAAGAAGAGATCGGGATTCAAGATGAATCTTTTTTATACCCTTTTCAAACTTGTTATTGGGTTCATGACTGAGTTGTACGTATATATTTTTTTTTCCAGGAAAGACGACTTTTGTAAAGAGGCACATCACTGGGGAGTTTGAGAAGAAATATGAACGTCCGTGGTTTGGCATTTTGTGTTTAATTGGATGGTTTATTCTGTTTATTGTGCTGTCTATGTACTTTCTTTTCAATTGTATTCATTTTTTCATGTTTTCTATGAAATCAGCCACCATTGGCGTGGAGGTGCACCCACTGGACTTCTTCACAAACTGTGGAAAGATTAGATTTTACTGCTGGGACACTGCTGGGCAGGAGAAGTTTGGGGGTTTGCGTGATGGATACTAGTAAGTTTGGTGGTTTGCCTGATTATTCTGAACATGGATTGAGATTTATGGGGCTAATTGTTTTTATTGTTTATTTTGTAATCTTATTGAATTTCCAAAGTTCTCTTGATCCGATACATTCATTTATCTTGATTCCCTTTTTTTGAACTGCTTTAAGCCTTTTTGATTTGTTATGTTTTAGTGATAAATGGTTTCTTTTTTCCATGATGAACTCCTGAATCAAATTTCTTCCTGCTATGGTTTATATTTCTAATGTAATGTTCTTTGTCCATGATTGCAGCATCCATGGGCAATGTGCAATCATTATGTTTGATGTTACAGCCAGATTGACATACAAAAATGTTCCTACATGGCACCGGGATCTTTGCAGGTGTTTTGAGATTTGTTTGTAGATGTTAAGGAATTTTGCATTAACAGGGCACCCTCTGATTTCTTCATTAAATTTCAGGGTGTGTGAGAATATTCCCATTGTTCTTTGTGGAAACAAGGTTGATGTGAAAAATAGGCAGGTTAAAGCCAAGCAAGTCACATTCCACAGGAAGAAGAATCTACAATACTATGAAATATCTGCGAAGAGTAACTACAACTTTGAGAAGCCATTCTTGTACTTGGCCAGGAAGTTAGCTGGGTAAACTCAGTTGCCTGCCTGTTTGCTTTTTACTGTTATCTTTAAAACGTGCGTTCACTACTCATGACGACAATTGGTTTCCTTTTCTTATGGTGGTGGTTACATCTGTTAGCGATGCTAACATTCAATTTGTGGAGAGTCCTGCCCTTGCTCCTCCAGAAGTACACATTGACTTGGCTGCCCAGCAACAGTAAGACTTTTTTATCACAACTCATAACCAATGAATCATTTACTGACATTCTTTAGAGCAATTCAAATTCTTATATGGCTTGTTTTCTGCAGGCATGAAGCTGAGTTGGCGGCAGCTGCCAGTCAACCTCTGCCAGATGACGACGACGACGCATTCGAGTAGATACATGGTTTGATGAATATCTGGTGATTTTCTTTATCAGATATCTATATTTTCTCTTTTTTCCAGCCGTGTGATCGTGTTGCTAGGATTGACGATAGGCAATTGGTGGGCTGGATGATGTGGGTGTGGGTAGATATCTGAGTTTTGAAAACGTGAAGTTTTCCCGGAACAAACAGAATTTGGTGTCAATGATTTGTTCTTTTGTGAGTTGTGTATGGATTAATGTTACTGTTATGGATTAGATGTTACAATAATTGAGATGAGTTGATTCCGTTCTTCAACCTTGTGTTCACCATTCTTAATGTTCTGATCTGTTGACATACTCTTCTAGGCAT

mRNA sequence

TTTATTTCATCGGTTCGATTACTTTTCTGAGTATATTCTAATCTCTCTTCTTTTTTTTTTTTGCTTCTATTTCATGCTGAATTTCATAGGCTTTGCCAGACCAAAAGACTGTTGATTACCCGAGCTTCAAGCTTGTGATTGTTGGCGATGGCGGCACTGGAAAGACGACTTTTGTAAAGAGGCACATCACTGGGGAGTTTGAGAAGAAATATGAACCCACCATTGGCGTGGAGGTGCACCCACTGGACTTCTTCACAAACTGTGGAAAGATTAGATTTTACTGCTGGGACACTGCTGGGCAGGAGAAGTTTGGGGGTTTGCGTGATGGATACTACATCCATGGGCAATGTGCAATCATTATGTTTGATGTTACAGCCAGATTGACATACAAAAATGTTCCTACATGGCACCGGGATCTTTGCAGGGTGTGTGAGAATATTCCCATTGTTCTTTGTGGAAACAAGGTTGATGTGAAAAATAGGCAGGTTAAAGCCAAGCAAGTCACATTCCACAGGAAGAAGAATCTACAATACTATGAAATATCTGCGAAGAGTAACTACAACTTTGAGAAGCCATTCTTGTACTTGGCCAGGAAGTTAGCTGGCGATGCTAACATTCAATTTGTGGAGAGTCCTGCCCTTGCTCCTCCAGAAGTACACATTGACTTGGCTGCCCAGCAACAGCATGAAGCTGAGTTGGCGGCAGCTGCCAGTCAACCTCTGCCAGATGACGACGACGACGCATTCGAGTAGATACATGGTTTGATGAATATCTGGTGATTTTCTTTATCAGATATCTATATTTTCTCTTTTTTCCAGCCGTGTGATCGTGTTGCTAGGATTGACGATAGGCAATTGGTGGGCTGGATGATGTGGGTGTGGGTAGATATCTGAGTTTTGAAAACGTGAAGTTTTCCCGGAACAAACAGAATTTGGTGTCAATGATTTGTTCTTTTGTGAGTTGTGTATGGATTAATGTTACTGTTATGGATTAGATGTTACAATAATTGAGATGAGTTGATTCCGTTCTTCAACCTTGTGTTCACCATTCTTAATGTTCTGATCTGTTGACATACTCTTCTAGGCAT

Coding sequence (CDS)

ATGTTTGATGTTACAGCCAGATTGACATACAAAAATGTTCCTACATGGCACCGGGATCTTTGCAGGGTGTGTGAGAATATTCCCATTGTTCTTTGTGGAAACAAGGTTGATGTGAAAAATAGGCAGGTTAAAGCCAAGCAAGTCACATTCCACAGGAAGAAGAATCTACAATACTATGAAATATCTGCGAAGAGTAACTACAACTTTGAGAAGCCATTCTTGTACTTGGCCAGGAAGTTAGCTGGCGATGCTAACATTCAATTTGTGGAGAGTCCTGCCCTTGCTCCTCCAGAAGTACACATTGACTTGGCTGCCCAGCAACAGCATGAAGCTGAGTTGGCGGCAGCTGCCAGTCAACCTCTGCCAGATGACGACGACGACGCATTCGAGTAG

Protein sequence

MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE

Homology

[Close]

BLAST of CmaCh10G005740 vs. ExPASy Swiss-Prot
Match: Q8H156 (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.1e-67
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDAN+ FVESPALAPPEV IDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDD FE
Sbjct: 212 LPDDDDDTFE 221

[Close]

BLAST of CmaCh10G005740 vs. ExPASy Swiss-Prot
Match: P54766 (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus OX=34305 GN=RAN1B PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.0e-67
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 80  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 139

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD N+ FVESPALAPPEV IDLAAQQQHEAELAAAASQP
Sbjct: 140 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 199

Query: 121 LPDDDDDAFE 131
           LPDDDDDAF+
Sbjct: 200 LPDDDDDAFD 209

[Close]

BLAST of CmaCh10G005740 vs. ExPASy Swiss-Prot
Match: P54765 (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus OX=34305 GN=RAN1A PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.3e-66
Identity = 124/130 (95.38%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 80  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 139

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD N+ FVESPALAPPEV IDLAAQQQHEAELA AASQP
Sbjct: 140 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQP 199

Query: 121 LPDDDDDAFE 131
           LPDDDDDAF+
Sbjct: 200 LPDDDDDAFD 209

[Close]

BLAST of CmaCh10G005740 vs. ExPASy Swiss-Prot
Match: P41917 (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana OX=3702 GN=RAN2 PE=1 SV=3)

HSP 1 Score: 252.3 bits (643), Expect = 3.0e-66
Identity = 122/130 (93.85%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD N+ FVESPALAPPEVH+D+AAQQQ+EA+LAAAA+QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

[Close]

BLAST of CmaCh10G005740 vs. ExPASy Swiss-Prot
Match: P41918 (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum OX=4097 GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.1e-66
Identity = 123/130 (94.62%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD N+ FVESPALAPPEV IDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDD+ F+
Sbjct: 212 LPDDDDETFD 221

[Close]

BLAST of CmaCh10G005740 vs. ExPASy TrEMBL
Match: A0A6J1JK02 (GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 GN=LOC111485273 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 4.8e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

[Close]

BLAST of CmaCh10G005740 vs. ExPASy TrEMBL
Match: A0A6J1JBH7 (GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 GN=LOC111485271 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANI FVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

[Close]

BLAST of CmaCh10G005740 vs. ExPASy TrEMBL
Match: A0A6J1HAB9 (GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111461564 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANI FVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

[Close]

BLAST of CmaCh10G005740 vs. ExPASy TrEMBL
Match: A0A5A7TV42 (GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00300 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANI FVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

[Close]

BLAST of CmaCh10G005740 vs. ExPASy TrEMBL
Match: A0A5D3CU46 (GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00290 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 93  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 152

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANI FVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 153 ISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 212

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 213 LPDDDDDAFE 222

[Close]

BLAST of CmaCh10G005740 vs. NCBI nr
Match: XP_022987854.1 (GTP-binding nuclear protein Ran-3-like [Cucurbita maxima])

HSP 1 Score: 263.5 bits (672), Expect = 9.9e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

[Close]

BLAST of CmaCh10G005740 vs. NCBI nr
Match: KAG7023545.1 (GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 135 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 194

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANI FVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 195 ISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 254

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 255 LPDDDDDAFE 264

[Close]

BLAST of CmaCh10G005740 vs. NCBI nr
Match: XP_022960900.1 (GTP-binding nuclear protein Ran-3-like [Cucurbita moschata] >XP_022960902.1 GTP-binding nuclear protein Ran-3-like [Cucurbita moschata] >XP_022960903.1 GTP-binding nuclear protein Ran-3-like [Cucurbita moschata] >XP_022987852.1 GTP-binding nuclear protein Ran-3 [Cucurbita maxima] >XP_022987853.1 GTP-binding nuclear protein Ran-3 [Cucurbita maxima] >XP_023516916.1 GTP-binding nuclear protein Ran-3-like [Cucurbita pepo subsp. pepo] >XP_023516917.1 GTP-binding nuclear protein Ran-3-like [Cucurbita pepo subsp. pepo] >XP_023516918.1 GTP-binding nuclear protein Ran-3-like [Cucurbita pepo subsp. pepo] >XP_023516919.1 GTP-binding nuclear protein Ran-3-like [Cucurbita pepo subsp. pepo] >KAG6589873.1 GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023546.1 GTP-binding nuclear protein Ran-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6589874.1 GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG6589875.1 GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANI FVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

[Close]

BLAST of CmaCh10G005740 vs. NCBI nr
Match: XP_008465001.1 (PREDICTED: GTP-binding nuclear protein Ran-3-like [Cucumis melo] >KAA0046737.1 GTP-binding nuclear protein Ran-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 125 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 184

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANI FVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 185 ISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 244

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 245 LPDDDDDAFE 254

[Close]

BLAST of CmaCh10G005740 vs. NCBI nr
Match: XP_008465002.1 (PREDICTED: GTP-binding nuclear protein Ran-3 [Cucumis melo] >XP_038879204.1 GTP-binding nuclear protein Ran-3 [Benincasa hispida] >KAA0046738.1 GTP-binding nuclear protein Ran-3 [Cucumis melo var. makuwa] >TYK14515.1 GTP-binding nuclear protein Ran-3 [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDANI FVESPALAPPEVHIDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

[Close]

BLAST of CmaCh10G005740 vs. TAIR 10
Match: AT5G55190.1 (RAN GTPase 3 )

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-68
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGDAN+ FVESPALAPPEV IDLAAQQQHEAELAAAASQP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDD FE
Sbjct: 212 LPDDDDDTFE 221

[Close]

BLAST of CmaCh10G005740 vs. TAIR 10
Match: AT5G20020.1 (RAS-related GTP-binding nuclear protein 2 )

HSP 1 Score: 252.3 bits (643), Expect = 2.1e-67
Identity = 122/130 (93.85%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD N+ FVESPALAPPEVH+D+AAQQQ+EA+LAAAA+QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDDAFE
Sbjct: 212 LPDDDDDAFE 221

[Close]

BLAST of CmaCh10G005740 vs. TAIR 10
Match: AT5G20010.1 (RAS-related nuclear protein-1 )

HSP 1 Score: 243.4 bits (620), Expect = 9.9e-65
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           ISAKSNYNFEKPFLYLARKLAGD N+ FVE+PALAPPEVHID+A QQ++EAEL  AA+QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQP 211

Query: 121 LPDDDDDAFE 131
           LPDDDDD FE
Sbjct: 212 LPDDDDDIFE 221

[Close]

BLAST of CmaCh10G005740 vs. TAIR 10
Match: AT5G55080.1 (ras-related nuclear protein 4 )

HSP 1 Score: 148.3 bits (373), Expect = 4.3e-36
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTAR TY N+  W+RDL RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE
Sbjct: 92  MFDVTARHTYMNIDRWYRDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLARKLAGDANIQFVESPALAPPEVHIDLAAQQQHEAELAAAASQP 120
           +SAK+N NFEKPFLYLAR++AGDA + FVES     PE  ID    +  +     A +QP
Sbjct: 152 MSAKNNCNFEKPFLYLARRIAGDAKLSFVES-----PEAQIDNLDVESLQLLTVEAGTQP 207

Query: 121 L 122
           L
Sbjct: 212 L 207

[Close]

BLAST of CmaCh10G005740 vs. TAIR 10
Match: AT5G39620.1 (RAB GTPase homolog G1 )

HSP 1 Score: 50.8 bits (120), Expect = 9.4e-07
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN--RQVKAKQVTFH-- 60
           ++DV    T++++  WH +  +          P VL GNK DV N   +V AK++     
Sbjct: 84  VYDVNTLKTFESIDNWHDEFIKQANPETPTKFPFVLMGNKTDVNNGKPRVVAKEIADQWC 143

Query: 61  -RKKNLQYYEISAKSNYNFEKPFLYLARK 80
             K N+ Y+E SAK+  N E+ FL +A+K
Sbjct: 144 GSKGNIVYFETSAKAKINVEEAFLEIAKK 172

The following BLAST results are available for this feature:

BLAST of CmaCh10G005740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H156	2.1e-67	96.92	GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 S...	[more]
P54766	6.0e-67	96.15	GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus OX=34305 GN=RAN1...	[more]
P54765	2.3e-66	95.38	GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus OX=34305 GN=RAN1...	[more]
P41917	3.0e-66	93.85	GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana OX=3702 GN=RAN2 PE=1 S...	[more]
P41918	5.1e-66	94.62	GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum OX=4097 GN=RAN-A1 PE=2 S...	[more]

BLAST of CmaCh10G005740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JK02	4.8e-67	100.00	GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 GN=LOC111485273 PE=3 SV=...	[more]
A0A6J1JBH7	1.8e-66	99.23	GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 GN=LOC111485271 PE=3 SV=...	[more]
A0A6J1HAB9	1.8e-66	99.23	GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111461564 PE=3 S...	[more]
A0A5A7TV42	1.8e-66	99.23	GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CU46	1.8e-66	99.23	GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of CmaCh10G005740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987854.1	9.9e-67	100.00	GTP-binding nuclear protein Ran-3-like [Cucurbita maxima]	[more]
KAG7023545.1	3.8e-66	99.23	GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022960900.1	3.8e-66	99.23	GTP-binding nuclear protein Ran-3-like [Cucurbita moschata] >XP_022960902.1 GTP-...	[more]
XP_008465001.1	3.8e-66	99.23	PREDICTED: GTP-binding nuclear protein Ran-3-like [Cucumis melo] >KAA0046737.1 G...	[more]
XP_008465002.1	3.8e-66	99.23	PREDICTED: GTP-binding nuclear protein Ran-3 [Cucumis melo] >XP_038879204.1 GTP-...	[more]

BLAST of CmaCh10G005740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55190.1	1.5e-68	96.92	RAN GTPase 3	[more]
AT5G20020.1	2.1e-67	93.85	RAS-related GTP-binding nuclear protein 2	[more]
AT5G20010.1	9.9e-65	90.77	RAS-related nuclear protein-1	[more]
AT5G55080.1	4.3e-36	61.98	ras-related nuclear protein 4	[more]
AT5G39620.1	9.4e-07	33.71	RAB GTPase homolog G1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002041	Ran GTPase	PRINTS	PR00627	GTPRANTC4	coord: 39..57 score: 81.38 coord: 3..24 score: 86.19 coord: 77..99 score: 73.41
IPR002041	Ran GTPase	PANTHER	PTHR24071	RAN GTPASE	coord: 1..130
IPR002041	Ran GTPase	PROSITE	PS51418	RAN	coord: 1..80 score: 11.959613
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 1..83 e-value: 6.6E-4 score: -60.9
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 1..129 e-value: 3.8E-67 score: 239.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..130
None	No IPR available	PANTHER	PTHR24071:SF19	GTP-BINDING NUCLEAR PROTEIN	coord: 1..130
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..130 score: 10.018968
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 1..80 e-value: 2.9E-20 score: 72.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..128 e-value: 2.3E-34 score: 120.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G005740.1	CmaCh10G005740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0000054	ribosomal subunit export from nucleus
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding