CmaCh10G004690 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G004690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionEukaryotic translation initiation factor 5A
LocationCma_Chr10: 2120321 .. 2120861 (-)
RNA-Seq ExpressionCmaCh10G004690
SyntenyCmaCh10G004690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGCCATGCCATTTCACCCGGTTGGTGCACTTTGATGATGAATTTCAAAACCACATTTTCATTGCGTATGGCAATGATTTTCTGAAATGAACCATGGATATATGAAAGAATATTCTTTCAAGCTACTCGGCCAAGCATATTTTGGCTGCCATATATCATCACTTTTTTTCTATCTCCCTTCATTTCAGGTCGTTGAAGTTTCTACTTCAAAACATGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGCGAAGAGACTTGAAGTATTTGTTCCTTCTTCTCAGAAATGCGATGTAATTTCGTTGTCACTCTCTTCTTGTGTTCTACTCTCTAACTACTAATTTTATTCTACTAAGAAACGTTGCTTGTATTCCTTGCAGGTTCCCTATGTTAATCGCACCGACTATCATCTGATTGATATATCTGAGGATGGTTTTGTAAGTTTCAATTATATTGAAACATGATTTGCTTTATATACGAAGCTTAATTTTTATGTTTCTTGCTTCAATTCAGATTTGA

mRNA sequence

ATGTATGCCATGCCATTTCACCCGGTCGTTGAAGTTTCTACTTCAAAACATGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGCGAAGAGACTTGAAGTATTTGTTCCTTCTTCTCAGAAATGCGATGTTCCCTATGTTAATCGCACCGACTATCATCTGATTGATATATCTGAGGATGGTTTTATTTGA

Coding sequence (CDS)

ATGTATGCCATGCCATTTCACCCGGTCGTTGAAGTTTCTACTTCAAAACATGGAAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGCGAAGAGACTTGAAGTATTTGTTCCTTCTTCTCAGAAATGCGATGTTCCCTATGTTAATCGCACCGACTATCATCTGATTGATATATCTGAGGATGGTTTTATTTGA

Protein sequence

MYAMPFHPVVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGFI
Homology
BLAST of CmaCh10G004690 vs. ExPASy Swiss-Prot
Match: Q9AXQ3 (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-24
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFNAK+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. ExPASy Swiss-Prot
Match: P56333 (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum OX=4113 GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-24
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFN K+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. ExPASy Swiss-Prot
Match: Q945F4 (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-24
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFN K+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. ExPASy Swiss-Prot
Match: Q9AXQ5 (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-24
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFN K+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. ExPASy Swiss-Prot
Match: P56335 (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum OX=4113 GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-24
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFN K+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. ExPASy TrEMBL
Match: A0A803QQZ6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 8  PVVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDG 67
          PVVEVSTSK GKHGHAKCHFVAIDIF AK+LE  VPSS  CDVP+VNRTDY LIDISEDG
Sbjct: 10 PVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG 69

Query: 68 FI 70
          F+
Sbjct: 70 FV 71

BLAST of CmaCh10G004690 vs. ExPASy TrEMBL
Match: A0A5B7AQJ4 (Eukaryotic translation initiation factor 5A OS=Davidia involucrata OX=16924 GN=Din_028408 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFNAK+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. ExPASy TrEMBL
Match: A0A5B7BLL8 (Eukaryotic translation initiation factor 5A OS=Davidia involucrata OX=16924 GN=Din_038705 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFNAK+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. ExPASy TrEMBL
Match: A0A5B7BTC8 (Eukaryotic translation initiation factor 5A OS=Davidia involucrata OX=16924 GN=Din_040682 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFNAK+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. ExPASy TrEMBL
Match: A0A5B7CBY2 (Eukaryotic translation initiation factor 5A OS=Davidia involucrata OX=16924 GN=Din_048183 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFNAK+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. NCBI nr
Match: KAG7023445.1 (Eukaryotic translation initiation factor 5A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 55/60 (91.67%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFN KRLEVFVPSSQKCDVPYV  TDYHLIDI EDGF
Sbjct: 45  VVEVSTSKPGKHGHAKCHFVAIDIFNGKRLEVFVPSSQKCDVPYVYHTDYHLIDICEDGF 104

BLAST of CmaCh10G004690 vs. NCBI nr
Match: KAG6589773.1 (hypothetical protein SDJN03_15196, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFN KRLEVFVPSSQKCDVP V  TDYHLIDI EDGF
Sbjct: 42  VVEVSTSKPGKHGHAKCHFVAIDIFNGKRLEVFVPSSQKCDVPCVYHTDYHLIDICEDGF 101

Query: 69  I 70
           +
Sbjct: 102 V 102

BLAST of CmaCh10G004690 vs. NCBI nr
Match: XP_042390153.1 (eukaryotic translation initiation factor 5A-2-like isoform X2 [Zingiber officinale])

HSP 1 Score: 113.6 bits (283), Expect = 6.7e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFNAK+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 42  VVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 101

Query: 69  I 70
           I
Sbjct: 102 I 102

BLAST of CmaCh10G004690 vs. NCBI nr
Match: XP_042390150.1 (eukaryotic translation initiation factor 5A-2-like isoform X2 [Zingiber officinale])

HSP 1 Score: 113.6 bits (283), Expect = 6.7e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFNAK+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 101 VVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 160

Query: 69  I 70
           I
Sbjct: 161 I 161

BLAST of CmaCh10G004690 vs. NCBI nr
Match: KAG6470582.1 (hypothetical protein ZIOFF_071656 [Zingiber officinale])

HSP 1 Score: 113.6 bits (283), Expect = 6.7e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIFNAK+LE  VPSS  CDVP+VNRTDY LIDISEDGF
Sbjct: 97  VVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF 156

Query: 69  I 70
           I
Sbjct: 157 I 157

BLAST of CmaCh10G004690 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-24
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIF +K+LE  VPSS  CDVP+VNRTDY LIDISEDG+
Sbjct: 41  VVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGY 100

Query: 69  I 70
           +
Sbjct: 101 V 101

BLAST of CmaCh10G004690 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-24
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIF AK+LE  VPSS  CDVP+VNR DY LIDI+EDGF
Sbjct: 41  VVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGF 100

Query: 69  I 70
           +
Sbjct: 101 V 101

BLAST of CmaCh10G004690 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-24
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIF +K+LE  VPSS  CDVP+VNR DY LIDISEDGF
Sbjct: 41  VVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGF 100

Query: 69  I 70
           +
Sbjct: 101 V 101

BLAST of CmaCh10G004690 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-24
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 9   VVEVSTSKHGKHGHAKCHFVAIDIFNAKRLEVFVPSSQKCDVPYVNRTDYHLIDISEDGF 68
           VVEVSTSK GKHGHAKCHFVAIDIF AK+LE  VPSS  CDVP+VNR DY LIDI+EDGF
Sbjct: 41  VVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGF 100

Query: 69  I 70
           +
Sbjct: 101 V 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9AXQ31.2e-2485.25Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE... [more]
P563333.3e-2483.61Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum OX=4113 GN=... [more]
Q945F43.3e-2483.61Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV... [more]
Q9AXQ53.3e-2483.61Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum OX=4081 PE... [more]
P563353.3e-2483.61Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum OX=4113 GN=EI... [more]
Match NameE-valueIdentityDescription
A0A803QQZ63.3e-2283.87Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5B7AQJ44.3e-2285.25Eukaryotic translation initiation factor 5A OS=Davidia involucrata OX=16924 GN=D... [more]
A0A5B7BLL84.3e-2285.25Eukaryotic translation initiation factor 5A OS=Davidia involucrata OX=16924 GN=D... [more]
A0A5B7BTC84.3e-2285.25Eukaryotic translation initiation factor 5A OS=Davidia involucrata OX=16924 GN=D... [more]
A0A5B7CBY24.3e-2285.25Eukaryotic translation initiation factor 5A OS=Davidia involucrata OX=16924 GN=D... [more]
Match NameE-valueIdentityDescription
KAG7023445.12.1e-2391.67Eukaryotic translation initiation factor 5A, partial [Cucurbita argyrosperma sub... [more]
KAG6589773.11.0e-2288.52hypothetical protein SDJN03_15196, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_042390153.16.7e-2286.89eukaryotic translation initiation factor 5A-2-like isoform X2 [Zingiber officina... [more]
XP_042390150.16.7e-2286.89eukaryotic translation initiation factor 5A-2-like isoform X2 [Zingiber officina... [more]
KAG6470582.16.7e-2286.89hypothetical protein ZIOFF_071656 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
AT1G13950.12.0e-2480.33eukaryotic elongation factor 5A-1 [more]
AT1G26630.13.4e-2480.33Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
AT1G69410.13.4e-2480.33eukaryotic elongation factor 5A-3 [more]
AT1G26630.23.4e-2480.33Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 6..52
e-value: 5.0E-20
score: 73.1
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 9..69
NoneNo IPR availablePANTHERPTHR11673:SF42BNAA07G09420D PROTEINcoord: 9..69
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 9..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G004690.1CmaCh10G004690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006413 translational initiation
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding