CmaCh10G003920 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh10G003920
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	VIN3-like protein 2
Location	Cma_Chr10: 1816786 .. 1817214 (-)
RNA-Seq Expression	CmaCh10G003920
Synteny	CmaCh10G003920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATACTCAAGGATGTTCTAGGAAGGAGTGGTCGATTGAAGTCTAGCGCCAAAGATCGAGAAACTGGGTTGGGAGGAGAGGAACGGCGACATGGCAAAACATCCAAGAAGAGAAGTGCTGAGAGGCAAGATGCTGATTGTGCAGCCAATGGTATCTCAGACAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGCGAGGGGCACATAGAGAAGAACTTCAGACAAAAATTCTTAACCTGGTACAGCTTGAGAGCCACAGCACAGGATATTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCCCTTGCAGAGCAACTTGTGGATACCTTTTCAGAATGCATTTCAATCAAGAAAACATGTGCTGTGCCTGCTGGATTCTGCATGAAGCTTTGGCATTGA

mRNA sequence

ATGGAAATACTCAAGGATGTTCTAGGAAGGAGTGGTCGATTGAAGTCTAGCGCCAAAGATCGAGAAACTGGGTTGGGAGGAGAGGAACGGCGACATGGCAAAACATCCAAGAAGAGAAGTGCTGAGAGGCAAGATGCTGATTGTGCAGCCAATGGTATCTCAGACAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGCGAGGGGCACATAGAGAAGAACTTCAGACAAAAATTCTTAACCTGGTACAGCTTGAGAGCCACAGCACAGGATATTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCCCTTGCAGAGCAACTTGTGGATACCTTTTCAGAATGCATTTCAATCAAGAAAACATGTGCTGTGCCTGCTGGATTCTGCATGAAGCTTTGGCATTGA

Coding sequence (CDS)

ATGGAAATACTCAAGGATGTTCTAGGAAGGAGTGGTCGATTGAAGTCTAGCGCCAAAGATCGAGAAACTGGGTTGGGAGGAGAGGAACGGCGACATGGCAAAACATCCAAGAAGAGAAGTGCTGAGAGGCAAGATGCTGATTGTGCAGCCAATGGTATCTCAGACAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGCGAGGGGCACATAGAGAAGAACTTCAGACAAAAATTCTTAACCTGGTACAGCTTGAGAGCCACAGCACAGGATATTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCCCTTGCAGAGCAACTTGTGGATACCTTTTCAGAATGCATTTCAATCAAGAAAACATGTGCTGTGCCTGCTGGATTCTGCATGAAGCTTTGGCATTGA

Protein sequence

MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTFSECISIKKTCAVPAGFCMKLWH

Homology

[Close]

BLAST of CmaCh10G003920 vs. ExPASy Swiss-Prot
Match: Q9SUM4 (VIN3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=VIL2 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.0e-32
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 45  DADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDN 104
           + D +ANG ++   E+ VK+IR LEC GHI+KNFRQKFLTWYSLRAT+Q+IR+VK F+D 
Sbjct: 609 NGDHSANGGTESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDT 668

Query: 105 FIEDPSALAEQLVDTFSECISIKK--------TCAVPAGFCMKLWH 143
           FI+DP ALAEQL+DTF + +SIK+        +  VP+GFCMKLWH
Sbjct: 669 FIDDPMALAEQLIDTFDDRVSIKRSAVGGSGASAVVPSGFCMKLWH 714

[Close]

BLAST of CmaCh10G003920 vs. ExPASy Swiss-Prot
Match: Q9FIE3 (Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana OX=3702 GN=VIN3 PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28
Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 26  GGEERRHGKTSKKRSAERQDADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTW 85
           GG +R   +T      E+ + + AANG+ DKD  + VK IR LE EGHI+K+FR++FLTW
Sbjct: 503 GGNKRFKSRTVSLN--EKPEINNAANGVGDKDLGHIVKTIRCLEEEGHIDKSFRERFLTW 562

Query: 86  YSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTFSECISIKKTC---AVPAGFCMKLWH 143
           YSLRAT +++R+VK FV+ F+ED S+L +QLVDTFSE I  K++     VPAG C+KLWH
Sbjct: 563 YSLRATHREVRVVKIFVETFMEDLSSLGQQLVDTFSESILSKRSSTNGVVPAGICLKLWH 620

[Close]

BLAST of CmaCh10G003920 vs. ExPASy Swiss-Prot
Match: Q5BPT4 (VIN3-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=VIL3 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-16
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 58  FEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLV 117
           FE  V LIR LEC G ++ +FR+KFLTWY L+AT ++  +V+ FVD F +D  ALA+QL+
Sbjct: 440 FEECVNLIRQLECSGQVKSDFRKKFLTWYCLKATDKEKHVVEIFVDTFKDDKEALAKQLI 499

Query: 118 DTFSECISIK 128
           DTFS+CI+ K
Sbjct: 500 DTFSDCITRK 509

[Close]

BLAST of CmaCh10G003920 vs. ExPASy Swiss-Prot
Match: Q9LHF5 (VIN3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=VIL1 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.0e-16
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 40  SAERQDADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVK 99
           S + ++ +C ++ I D   E  VK+IRWLE EGHI+  FR +FLTW+S+ +TAQ+  +V 
Sbjct: 506 SNDSENHECDSSSIDD-TLEKCVKVIRWLEREGHIKTTFRVRFLTWFSMSSTAQEQSVVS 565

Query: 100 AFVDNFIEDPSALAEQLVDTFSECISIKK 129
            FV    +DP +LA QLVD F++ +S K+
Sbjct: 566 TFVQTLEDDPGSLAGQLVDAFTDVVSTKR 593

[Close]

BLAST of CmaCh10G003920 vs. ExPASy TrEMBL
Match: A0A6J1JIF1 (VIN3-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111484877 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 8.9e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY 60
           MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY
Sbjct: 595 MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY 654

Query: 61  YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF 120
           YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF
Sbjct: 655 YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF 714

Query: 121 SECISIKKTCAVPAGFCMKLWH 143
           SECISIKKTCAVPAGFCMKLWH
Sbjct: 715 SECISIKKTCAVPAGFCMKLWH 736

[Close]

BLAST of CmaCh10G003920 vs. ExPASy TrEMBL
Match: A0A6J1E144 (VIN3-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111429850 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.2e-72
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLK-SSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFE 60
           MEILKDVLGRSGRLK SSAKDRETG GGEER+HG+TSKKRSAERQDADCAANGISDKDFE
Sbjct: 595 MEILKDVLGRSGRLKSSSAKDRETGSGGEERQHGRTSKKRSAERQDADCAANGISDKDFE 654

Query: 61  YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDT 120
           YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQD+RIVKAFVDNFIEDPSALAEQLVDT
Sbjct: 655 YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDVRIVKAFVDNFIEDPSALAEQLVDT 714

Query: 121 FSECISIKKTCAVPAGFCMKLWH 143
           FSECISIKKTCAVPAGFCMKLWH
Sbjct: 715 FSECISIKKTCAVPAGFCMKLWH 737

[Close]

BLAST of CmaCh10G003920 vs. ExPASy TrEMBL
Match: A0A6J1C0Q6 (VIN3-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111007212 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.8e-66
Identity = 125/142 (88.03%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY 60
           MEI+KDVLGRSGR K SAKDRE G GGE+ RHG TSKKRS ERQD DC  NGISDKDFEY
Sbjct: 596 MEIIKDVLGRSGRSKCSAKDRENGSGGEDPRHGSTSKKRSTERQDVDCTTNGISDKDFEY 655

Query: 61  YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF 120
           YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQ++RIVKAFVDNFIEDPSALAEQLVDTF
Sbjct: 656 YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQEVRIVKAFVDNFIEDPSALAEQLVDTF 715

Query: 121 SECISIKKTCAVPAGFCMKLWH 143
           SECIS KK CAVP GFCMKLWH
Sbjct: 716 SECISSKKICAVPTGFCMKLWH 737

[Close]

BLAST of CmaCh10G003920 vs. ExPASy TrEMBL
Match: A0A6J1EU00 (VIN3-like protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436521 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.9e-66
Identity = 126/142 (88.73%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY 60
           MEILKDVLGRSGR KSSAKDRE G GG++ RHG  SKKRSAE +DADC ANGISDKDFEY
Sbjct: 574 MEILKDVLGRSGRSKSSAKDRENGSGGDKLRHGSKSKKRSAEIRDADCTANGISDKDFEY 633

Query: 61  YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF 120
           YVKLIRWLECEGHI+KNFRQKFLTWYSL ATAQ++RIVKAFVDNFIEDPSALAEQLVDTF
Sbjct: 634 YVKLIRWLECEGHIDKNFRQKFLTWYSLSATAQEVRIVKAFVDNFIEDPSALAEQLVDTF 693

Query: 121 SECISIKKTCAVPAGFCMKLWH 143
           SECIS KKTCAVPAGFCMKLWH
Sbjct: 694 SECISSKKTCAVPAGFCMKLWH 715

[Close]

BLAST of CmaCh10G003920 vs. ExPASy TrEMBL
Match: A0A6J1ETY0 (VIN3-like protein 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436521 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 9.9e-66
Identity = 126/142 (88.73%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY 60
           MEILKDVLGRSGR KSSAKDRE G GG++ RHG  SKKRSAE +DADC ANGISDKDFEY
Sbjct: 595 MEILKDVLGRSGRSKSSAKDRENGSGGDKLRHGSKSKKRSAEIRDADCTANGISDKDFEY 654

Query: 61  YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF 120
           YVKLIRWLECEGHI+KNFRQKFLTWYSL ATAQ++RIVKAFVDNFIEDPSALAEQLVDTF
Sbjct: 655 YVKLIRWLECEGHIDKNFRQKFLTWYSLSATAQEVRIVKAFVDNFIEDPSALAEQLVDTF 714

Query: 121 SECISIKKTCAVPAGFCMKLWH 143
           SECIS KKTCAVPAGFCMKLWH
Sbjct: 715 SECISSKKTCAVPAGFCMKLWH 736

[Close]

BLAST of CmaCh10G003920 vs. NCBI nr
Match: XP_022987279.1 (VIN3-like protein 2 [Cucurbita maxima] >XP_022987280.1 VIN3-like protein 2 [Cucurbita maxima])

HSP 1 Score: 289.3 bits (739), Expect = 1.8e-74
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY 60
           MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY
Sbjct: 595 MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY 654

Query: 61  YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF 120
           YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF
Sbjct: 655 YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF 714

Query: 121 SECISIKKTCAVPAGFCMKLWH 143
           SECISIKKTCAVPAGFCMKLWH
Sbjct: 715 SECISIKKTCAVPAGFCMKLWH 736

[Close]

BLAST of CmaCh10G003920 vs. NCBI nr
Match: XP_023516105.1 (VIN3-like protein 2 [Cucurbita pepo subsp. pepo] >XP_023516106.1 VIN3-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.4 bits (729), Expect = 2.7e-73
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLKSSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFEY 60
           MEILKDVLGRSGRLKSSAKDRETG GGEERRHG+TSKKRSAERQDADCAANGISDKDFEY
Sbjct: 595 MEILKDVLGRSGRLKSSAKDRETGSGGEERRHGRTSKKRSAERQDADCAANGISDKDFEY 654

Query: 61  YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTF 120
           YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQD+RIVKAFVDNFIEDPSALAEQLVDTF
Sbjct: 655 YVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDVRIVKAFVDNFIEDPSALAEQLVDTF 714

Query: 121 SECISIKKTCAVPAGFCMKLWH 143
           SECISIKKTCAVPAGFCMKLWH
Sbjct: 715 SECISIKKTCAVPAGFCMKLWH 736

[Close]

BLAST of CmaCh10G003920 vs. NCBI nr
Match: KAG6589704.1 (VIN3-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLK-SSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFE 60
           MEILKDVLGRSGRLK SSAKDRETG GGEER+HG+TSKKRSAERQDADCAANGISDKDFE
Sbjct: 595 MEILKDVLGRSGRLKSSSAKDRETGSGGEERQHGRTSKKRSAERQDADCAANGISDKDFE 654

Query: 61  YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDT 120
           YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQD+RIVKAFVDNFIEDPSALAEQLVDT
Sbjct: 655 YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDVRIVKAFVDNFIEDPSALAEQLVDT 714

Query: 121 FSECISIKKTCAVPAGFCMKLWH 143
           FSECISIKKTCAVPAGFCMKLWH
Sbjct: 715 FSECISIKKTCAVPAGFCMKLWH 737

[Close]

BLAST of CmaCh10G003920 vs. NCBI nr
Match: KAG7023384.1 (VIN3-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLK-SSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFE 60
           MEILKDVLGRSGRLK SSAKDRETG GGEER+HG+TSKKRSAERQDADCAANGISDKDFE
Sbjct: 591 MEILKDVLGRSGRLKSSSAKDRETGSGGEERQHGRTSKKRSAERQDADCAANGISDKDFE 650

Query: 61  YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDT 120
           YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQD+RIVKAFVDNFIEDPSALAEQLVDT
Sbjct: 651 YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDVRIVKAFVDNFIEDPSALAEQLVDT 710

Query: 121 FSECISIKKTCAVPAGFCMKLWH 143
           FSECISIKKTCAVPAGFCMKLWH
Sbjct: 711 FSECISIKKTCAVPAGFCMKLWH 733

[Close]

BLAST of CmaCh10G003920 vs. NCBI nr
Match: XP_022921662.1 (VIN3-like protein 2 [Cucurbita moschata] >XP_022921663.1 VIN3-like protein 2 [Cucurbita moschata])

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MEILKDVLGRSGRLK-SSAKDRETGLGGEERRHGKTSKKRSAERQDADCAANGISDKDFE 60
           MEILKDVLGRSGRLK SSAKDRETG GGEER+HG+TSKKRSAERQDADCAANGISDKDFE
Sbjct: 595 MEILKDVLGRSGRLKSSSAKDRETGSGGEERQHGRTSKKRSAERQDADCAANGISDKDFE 654

Query: 61  YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDT 120
           YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQD+RIVKAFVDNFIEDPSALAEQLVDT
Sbjct: 655 YYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDVRIVKAFVDNFIEDPSALAEQLVDT 714

Query: 121 FSECISIKKTCAVPAGFCMKLWH 143
           FSECISIKKTCAVPAGFCMKLWH
Sbjct: 715 FSECISIKKTCAVPAGFCMKLWH 737

[Close]

BLAST of CmaCh10G003920 vs. TAIR 10
Match: AT4G30200.1 (vernalization5/VIN3-like )

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-33
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 45  DADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDN 104
           + D +ANG ++   E+ VK+IR LEC GHI+KNFRQKFLTWYSLRAT+Q+IR+VK F+D 
Sbjct: 580 NGDHSANGGTESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDT 639

Query: 105 FIEDPSALAEQLVDTFSECISIKK--------TCAVPAGFCMKLWH 143
           FI+DP ALAEQL+DTF + +SIK+        +  VP+GFCMKLWH
Sbjct: 640 FIDDPMALAEQLIDTFDDRVSIKRSAVGGSGASAVVPSGFCMKLWH 685

[Close]

BLAST of CmaCh10G003920 vs. TAIR 10
Match: AT4G30200.3 (vernalization5/VIN3-like )

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-33
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 45  DADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDN 104
           + D +ANG ++   E+ VK+IR LEC GHI+KNFRQKFLTWYSLRAT+Q+IR+VK F+D 
Sbjct: 597 NGDHSANGGTESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDT 656

Query: 105 FIEDPSALAEQLVDTFSECISIKK--------TCAVPAGFCMKLWH 143
           FI+DP ALAEQL+DTF + +SIK+        +  VP+GFCMKLWH
Sbjct: 657 FIDDPMALAEQLIDTFDDRVSIKRSAVGGSGASAVVPSGFCMKLWH 702

[Close]

BLAST of CmaCh10G003920 vs. TAIR 10
Match: AT4G30200.2 (vernalization5/VIN3-like )

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-33
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 45  DADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDN 104
           + D +ANG ++   E+ VK+IR LEC GHI+KNFRQKFLTWYSLRAT+Q+IR+VK F+D 
Sbjct: 609 NGDHSANGGTESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDT 668

Query: 105 FIEDPSALAEQLVDTFSECISIKK--------TCAVPAGFCMKLWH 143
           FI+DP ALAEQL+DTF + +SIK+        +  VP+GFCMKLWH
Sbjct: 669 FIDDPMALAEQLIDTFDDRVSIKRSAVGGSGASAVVPSGFCMKLWH 714

[Close]

BLAST of CmaCh10G003920 vs. TAIR 10
Match: AT5G57380.1 (Fibronectin type III domain-containing protein )

HSP 1 Score: 124.8 bits (312), Expect = 5.6e-29
Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 26  GGEERRHGKTSKKRSAERQDADCAANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTW 85
           GG +R   +T      E+ + + AANG+ DKD  + VK IR LE EGHI+K+FR++FLTW
Sbjct: 503 GGNKRFKSRTVSLN--EKPEINNAANGVGDKDLGHIVKTIRCLEEEGHIDKSFRERFLTW 562

Query: 86  YSLRATAQDIRIVKAFVDNFIEDPSALAEQLVDTFSECISIKKTC---AVPAGFCMKLWH 143
           YSLRAT +++R+VK FV+ F+ED S+L +QLVDTFSE I  K++     VPAG C+KLWH
Sbjct: 563 YSLRATHREVRVVKIFVETFMEDLSSLGQQLVDTFSESILSKRSSTNGVVPAGICLKLWH 620

[Close]

BLAST of CmaCh10G003920 vs. TAIR 10
Match: AT2G18870.1 (vernalization5/VIN3-like )

HSP 1 Score: 87.4 bits (215), Expect = 9.9e-18
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 59  EYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATAQDIRIVKAFVDNFIEDPSALAEQLVD 118
           E  VK+IR LEC G++E  FRQKFLTW+SLRAT+Q+   V  F++ F +D  ALAEQLVD
Sbjct: 145 EQCVKIIRKLECSGYVESTFRQKFLTWFSLRATSQERNTVTTFMNAFNDDSMALAEQLVD 204

Query: 119 TFSECI 125
           TFS+CI
Sbjct: 205 TFSDCI 210

The following BLAST results are available for this feature:

BLAST of CmaCh10G003920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUM4	4.0e-32	60.38	VIN3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=VIL2 PE=1 SV=1	[more]
Q9FIE3	7.9e-28	53.33	Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana OX=3702 GN=VIN3 PE=1...	[more]
Q5BPT4	2.4e-16	55.71	VIN3-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=VIL3 PE=2 SV=1	[more]
Q9LHF5	9.0e-16	44.94	VIN3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=VIL1 PE=1 SV=1	[more]

BLAST of CmaCh10G003920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIF1	8.9e-75	100.00	VIN3-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111484877 PE=4 SV=1	[more]
A0A6J1E144	9.2e-72	96.50	VIN3-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111429850 PE=4 SV=1	[more]
A0A6J1C0Q6	5.8e-66	88.03	VIN3-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111007212 PE=4 SV=1	[more]
A0A6J1EU00	9.9e-66	88.73	VIN3-like protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436521 PE=...	[more]
A0A6J1ETY0	9.9e-66	88.73	VIN3-like protein 2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436521 PE=...	[more]

BLAST of CmaCh10G003920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987279.1	1.8e-74	100.00	VIN3-like protein 2 [Cucurbita maxima] >XP_022987280.1 VIN3-like protein 2 [Cucu...	[more]
XP_023516105.1	2.7e-73	97.89	VIN3-like protein 2 [Cucurbita pepo subsp. pepo] >XP_023516106.1 VIN3-like prote...	[more]
KAG6589704.1	1.9e-71	96.50	VIN3-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7023384.1	1.9e-71	96.50	VIN3-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022921662.1	1.9e-71	96.50	VIN3-like protein 2 [Cucurbita moschata] >XP_022921663.1 VIN3-like protein 2 [Cu...	[more]

BLAST of CmaCh10G003920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30200.1	2.9e-33	60.38	vernalization5/VIN3-like	[more]
AT4G30200.3	2.9e-33	60.38	vernalization5/VIN3-like	[more]
AT4G30200.2	2.9e-33	60.38	vernalization5/VIN3-like	[more]
AT5G57380.1	5.6e-29	53.33	Fibronectin type III domain-containing protein	[more]
AT2G18870.1	9.9e-18	62.12	vernalization5/VIN3-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR46286:SF2	VIN3-LIKE PROTEIN 2-RELATED	coord: 1..142
IPR044514	Vernalization insensitive 3-like	PANTHER	PTHR46286	VIN3-LIKE PROTEIN 2-RELATED	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G003920.1	CmaCh10G003920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040029	regulation of gene expression, epigenetic
biological_process	GO:0010048	vernalization response
cellular_component	GO:0005634	nucleus