CmaCh10G001980 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G001980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionphotosynthetic NDH subunit of subcomplex B 4, chloroplastic-like
LocationCma_Chr10: 894710 .. 896007 (-)
RNA-Seq ExpressionCmaCh10G001980
SyntenyCmaCh10G001980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGGCTATTGCAGGATTCAGCATGATCAACCCAACACTGCATAGCTCAAATCTCCACCCACACAAAGCAACCCTCATCCCACAACCCAAACTGGTATAGTGTCGTCTTTTTTCTTTCTGCCTCTAAACTCCATCCATTTTAACGTGCTCTATTTGACCATTTATTATGATTGTTGCAGCCTTCGAACTCTGGAATTTTCGGTCATCAACAACTGGTAAGTTCCTCTGATTTCCACATACAATGGAAGTAAAACTGATTGACGAATTCATTATATGGAAGTAATCAGAAGTTCATGGGATTTTGTGGAATAAATAGATTGAAGATACAAAGCGCCAAAGAGGCTCTATGGGCAAGGTGAGTGCTTTCCCAGATTGGCAATTGATGGCAGTTCTAGTTGATCACTTGGACGGCCAAAGAGACCTTGTTACCCACAAATCTATTGTGCATCTTAGCGATGAAGCTATAAAGAATGTCTGTAAGTGCTTATTTAGGCTGACTTTATGGACATTTATTATTGTAGACTGCAGATAGAATTAGGCCATTCAAATGAAAACTAACCTTCACTTTAACCATTGTTTAATATCAGACAGTCTTTACATCATGTTCACATGTTGGGGATGTCTGTTCTTTGGCTCCATGAAGGTACAATACATTCACTTTCAATGGGTTTTGGTTAATCCAAATTGTCGAGTAATGAACAAGATTATGGCTACAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGGTGAACTTCTTTTGTTGGGACTTTAGTCTTTAACAATGACACCACGTTGAAGGTTTTGTCTTTGTAAATGTCTGATCTTGCAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGACCTTTGGCGGGAGGAGCTGATAGAGGAGATTGAGCAGAAGGTCGGAGGGCTTAGAGAGTTAGAAGAAGCTGGAAGGAAATAAGAGCTTAACAAGGGATATTGGCATCCATTTGTGTCATTAGTATAATATAGCATAATCCAGTCTGTGTATACATTAAAACACTTCAGATACAGTAGCTGTTGGCAATATAGGGATTGTTTCAGTAAATTCTTACAGTTCTTTCCCTGTAGAAATGGGAAACAAACGTAAACCAGCAGAAACCATCCAATAGGTAAAAAGTATCAGTTCTTCTACCATCAGAGTTAGTGACAATCTTGTATAAAAATCATCACTTATGGGTCTGATAATTGTTTTAGGTTCATAAAGAGTGAAAACTAAGGATAAGTGAG

mRNA sequence

ATGGCCAAGGCTATTGCAGGATTCAGCATGATCAACCCAACACTGCATAGCTCAAATCTCCACCCACACAAAGCAACCCTCATCCCACAACCCAAACTGCCTTCGAACTCTGGAATTTTCGGTCATCAACAACTGATTGAAGATACAAAGCGCCAAAGAGGCTCTATGGGCAAGGTGAGTGCTTTCCCAGATTGGCAATTGATGGCAGTTCTAGTTGATCACTTGGACGGCCAAAGAGACCTTGTTACCCACAAATCTATTGTGCATCTTAGCGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGATGTCTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGACCTTTGGCGGGAGGAGCTGATAGAGGAGATTGAGCAGAAGGTCGGAGGGCTTAGAGAGTTAGAAGAAGCTGGAAGGAAATAAGAGCTTAACAAGGGATATTGGCATCCATTTGTGTCATTAGTATAATATAGCATAATCCAGTCTGTGTATACATTAAAACACTTCAGATACAGTAGCTGTTGGCAATATAGGGATTGTTTCAGTAAATTCTTACAGTTCTTTCCCTGTAGAAATGGGAAACAAACGTAAACCAGCAGAAACCATCCAATAGGTAAAAAGTATCAGTTCTTCTACCATCAGAGTTAGTGACAATCTTGTATAAAAATCATCACTTATGGGTCTGATAATTGTTTTAGGTTCATAAAGAGTGAAAACTAAGGATAAGTGAG

Coding sequence (CDS)

ATGGCCAAGGCTATTGCAGGATTCAGCATGATCAACCCAACACTGCATAGCTCAAATCTCCACCCACACAAAGCAACCCTCATCCCACAACCCAAACTGCCTTCGAACTCTGGAATTTTCGGTCATCAACAACTGATTGAAGATACAAAGCGCCAAAGAGGCTCTATGGGCAAGGTGAGTGCTTTCCCAGATTGGCAATTGATGGCAGTTCTAGTTGATCACTTGGACGGCCAAAGAGACCTTGTTACCCACAAATCTATTGTGCATCTTAGCGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGATGTCTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAGAAGCAAGAGGACATTGAAGAAGCAGCAAGAGCAGACCTTTGGCGGGAGGAGCTGATAGAGGAGATTGAGCAGAAGGTCGGAGGGCTTAGAGAGTTAGAAGAAGCTGGAAGGAAATAA

Protein sequence

MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVSAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK
Homology
[Close]
BLAST of CmaCh10G001980 vs. ExPASy Swiss-Prot
Match: Q8RXS1 (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.5e-49
Identity = 106/181 (58.56%), Postives = 125/181 (69.06%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKR--QRGSMGK 60
           MA+A   F+  N  + SS  H  K    P      N G +  + + E  +R   RGS+  
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGP------NHGYWLSKNVNEKRERNLMRGSLCV 60

Query: 61  VSAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
             A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS K
Sbjct: 61  RKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGR 179
           DP+YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  
Sbjct: 121 DPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVT 175

[Close]
BLAST of CmaCh10G001980 vs. ExPASy TrEMBL
Match: A0A6J1JG67 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484826 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.5e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmaCh10G001980 vs. ExPASy TrEMBL
Match: A0A6J1E2I6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429992 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.7e-97
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSM+NPTLHSSNLHPHK+TLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmaCh10G001980 vs. ExPASy TrEMBL
Match: A0A5A7UWT7 (Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002540 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFS+I PTLHSSNLHP K+ LIP  KL SNSG F HQ+L +  K +RGS+ KV+
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]
BLAST of CmaCh10G001980 vs. ExPASy TrEMBL
Match: A0A1S3BVN6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494001 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFS+I PTLHSSNLHP K+ LIP  KL SNSG F HQ+L +  K +RGS+ KV+
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]
BLAST of CmaCh10G001980 vs. ExPASy TrEMBL
Match: A0A6J1EZP2 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111440832 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.0e-83
Identity = 155/179 (86.59%), Postives = 166/179 (92.74%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLH-SSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKV 60
           MAKAIAGFS+I  TL+ SSNLHPHK+T IP   L  NSG+F H+QL E +KRQRGS+G+V
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLLPNSGVFSHRQLTEGSKRQRGSLGRV 60

Query: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDW LMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARA+LWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]
BLAST of CmaCh10G001980 vs. NCBI nr
Match: XP_022987205.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 367.9 bits (943), Expect = 5.1e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmaCh10G001980 vs. NCBI nr
Match: XP_023516363.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.8 bits (935), Expect = 4.3e-97
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSMINPTLHSSNLHPHK+TLIP PKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKSTLIPHPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmaCh10G001980 vs. NCBI nr
Match: XP_022921851.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita moschata] >KAG7023202.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.4 bits (934), Expect = 5.6e-97
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSM+NPTLHSSNLHPHK+TLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQKVGGLRELEEAGRK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]
BLAST of CmaCh10G001980 vs. NCBI nr
Match: KAG6589514.1 (Expansin-A1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.5 bits (872), Expect = 8.7e-90
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFSM+NPTLHSSNLHPHK+TLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQK 166
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQK 165

[Close]
BLAST of CmaCh10G001980 vs. NCBI nr
Match: XP_038880039.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 322.0 bits (824), Expect = 3.2e-84
Identity = 156/178 (87.64%), Postives = 166/178 (93.26%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MAKAIAGFS+I PTLHSSNLH HK+TLIP  KL SNS  F HQ+  E TK +RGS+GK++
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHQHKSTLIPPSKLLSNSRAFNHQEPPEVTKPRRGSLGKLN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 178

[Close]
BLAST of CmaCh10G001980 vs. TAIR 10
Match: AT1G18730.1 (NDH dependent flow 6 )

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-50
Identity = 106/181 (58.56%), Postives = 125/181 (69.06%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKR--QRGSMGK 60
           MA+A   F+  N  + SS  H  K    P      N G +  + + E  +R   RGS+  
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGP------NHGYWLSKNVNEKRERNLMRGSLCV 60

Query: 61  VSAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMK 120
             A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS K
Sbjct: 61  RKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAK 120

Query: 121 DPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGR 179
           DP+YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  
Sbjct: 121 DPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVT 175

[Close]
BLAST of CmaCh10G001980 vs. TAIR 10
Match: AT1G18730.3 (NDH dependent flow 6 )

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-49
Identity = 103/179 (57.54%), Postives = 122/179 (68.16%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MA+A   F+  N  + SS  H  K     Q   P++     +     +    RGS+    
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPK-----QNSGPNHGYWLSNVNEKRERNLMRGSLCVRK 60

Query: 61  AFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP
Sbjct: 61  ALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 179
           +YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 FYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 174

[Close]
BLAST of CmaCh10G001980 vs. TAIR 10
Match: AT1G18730.2 (NDH dependent flow 6 )

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-32
Identity = 70/141 (49.65%), Postives = 88/141 (62.41%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MA+A   F+  N  + SS  H  K     Q   P++     +     +    RGS+    
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPK-----QNSGPNHGYWLSNVNEKRERNLMRGSLCVRK 60

Query: 61  AFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP
Sbjct: 61  ALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYE 141
           +YDSE YR DGGDGTG+WVYE
Sbjct: 121 FYDSEEYRGDGGDGTGYWVYE 136

[Close]
BLAST of CmaCh10G001980 vs. TAIR 10
Match: AT1G18730.4 (NDH dependent flow 6 )

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-32
Identity = 70/141 (49.65%), Postives = 88/141 (62.41%), Query Frame = 0 

Query: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60
           MA+A   F+  N  + SS  H  K     Q   P++     +     +    RGS+    
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPK-----QNSGPNHGYWLSNVNEKRERNLMRGSLCVRK 60

Query: 61  AFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KDP
Sbjct: 61  ALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKDP 120

Query: 121 YYDSEVYRKDGGDGTGHWVYE 141
           +YDSE YR DGGDGTG+WVYE
Sbjct: 121 FYDSEEYRGDGGDGTGYWVYE 136

The following BLAST results are available for this feature:
BLAST of CmaCh10G001980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RXS13.5e-4958.56Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thali... [more]
BLAST of CmaCh10G001980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JG672.5e-98100.00photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma... [more]
A0A6J1E2I62.7e-9798.31photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita mo... [more]
A0A5A7UWT72.2e-8388.20Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3BVN62.2e-8388.20photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3... [more]
A0A6J1EZP25.0e-8386.59photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschat... [more]
BLAST of CmaCh10G001980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022987205.15.1e-98100.00photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi... [more]
XP_023516363.14.3e-9798.88photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo... [more]
XP_022921851.15.6e-9798.31photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita mosc... [more]
KAG6589514.18.7e-9098.18Expansin-A1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_038880039.13.2e-8487.64photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida][more]
BLAST of CmaCh10G001980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G18730.12.5e-5058.56NDH dependent flow 6 [more]
AT1G18730.31.6e-4957.54NDH dependent flow 6 [more]
AT1G18730.23.0e-3249.65NDH dependent flow 6 [more]
AT1G18730.43.0e-3249.65NDH dependent flow 6 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 155..175
IPR034570Photosynthetic NDH subunit of subcomplex B 4, chloroplasticPANTHERPTHR36315PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTICcoord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G001980.1CmaCh10G001980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009773 photosynthetic electron transport in photosystem I
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)