CmaCh10G000320 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh10G000320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr10: 116696 .. 118520 (-)
RNA-Seq ExpressionCmaCh10G000320
SyntenyCmaCh10G000320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTGAGTTCGACAGGTTTAGTTTTCCGATAAATATAGTTTTTATTACTTTAGCGATAAAAATGTTGATTCACCAATCAGACAGGTTGAGTATCCTATTTTATTCAATTTGAAGTAATTGAGGTATTATAGATTGAATAAAATAATATTTTGAAGTAGATGAATGATAATTCAAATTGGGACTTATGGTATATTAATAAATTAATTTAGTATTACATAATTACATCGATGCATATGAAATATAAATATATGAAATATATGGAGAGATGGATGGAAGTAGAATTTGAATGACAAAAAAAAGGAAATCAAATTTAAATTGTTACTGGCCAACAAACAAAAATGATTAGATTTTGCACATATAATATTAATCCACAAAAAAAAAAAAAAAAAAAAAAAAGACGTAAGAAATGGTATTAATGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGACGTAAGAAATGGTATTAATGGTTAAGCCACCAAAATATCTTATCGAATATCCACTATAACCTCTTATAATGGTGAAAAATTAATTGTGTTTATGGCATGCCTAACTCAAAATTACACTTCTAATAATTTATATTAAAAAAACTTATTTTATAATTTAGAGTTTTATTTTGTATTTGTTTCTACTCATTTATTTTTTTATAAATTTTAAATAAATTACTTCAAAATTATTTTTTTTTTATCAAAATTGGTTAATACTAATACTACTTTCATTAAGATAATGGTCATTAGACACTGAATATTTCAGGGCTTATAAAATAAATGTTAATTTTAAACACAAAACAGTATTAATTAATTTTAAAATTTATTAAAATTACATGCACTAAATTAACCATGAAGACATTTTAATTTTAATTTTAAATAAATCTATTCCTAGGTGTTGACGACAAATGAAAAGAAAACCATTCTTTTTACAATCATACCCTTATACTCCTTTTATTTTTCGTTGTTTCGCTCCATTTCTCCTTTTTTCCATCTATGTCGCTGCCGCGTACAGCCACCAAACCACCGGCAGATTTCTTTCTTCTCCTTCGTCCCCTGCAGCGAGCCACACATCGCCACGCCTTCGCCTTTTGACCCACACCATCCCCCCCATTGCCACGCCCATTTGATTTCTCTCTACACCTTCACGCCGCCACGCCAACCTGCATTTTGCCGCTGCGCCTCCATCTTCAAGTCTGCCGGAATCGAAGCATTTTTCTTCTTGCTCTTCATTTCAACGAGCCATCTTCAAAGTCGGACCACCTTAGAGTTAGGATAATTCTAATTTAAAATCTTGCCGAATCCGACCTATTTTGGATTCATTTCTTTTTCTTAGATCAAAACAAGATTTCAAATTCTTTCTTTTTTTTTTCTTTTTTCTGAGTTTCCGTTCCAAACCCCAGAAATTGTTATAATCTGTAATCGTTTCAAGTACAGGGTTCCAAACTGA

mRNA sequence

ATGGAGCCACCAAACCACCGGCAGATTTCTTTCTTCTCCTTCGTCCCCTGCAGCGAGCCACACATCGCCACGCCTTCGCCTTTTGACCCACACCATCCCCCCCATTGCCACGCCCATTTGATTTCTCTCTACACCTTCACGCCGCCACGCCAACCTGCATTTTGCCGCTGCGCCTCCATCTTCAAGTCTGCCGGAATCGAAGCATTTTTCTTCTTGCTCTTCATTTCAACGAGCCATCTTCAAAGTCGGACCACCTTAGAGGTTCCAAACTGA

Coding sequence (CDS)

ATGGAGCCACCAAACCACCGGCAGATTTCTTTCTTCTCCTTCGTCCCCTGCAGCGAGCCACACATCGCCACGCCTTCGCCTTTTGACCCACACCATCCCCCCCATTGCCACGCCCATTTGATTTCTCTCTACACCTTCACGCCGCCACGCCAACCTGCATTTTGCCGCTGCGCCTCCATCTTCAAGTCTGCCGGAATCGAAGCATTTTTCTTCTTGCTCTTCATTTCAACGAGCCATCTTCAAAGTCGGACCACCTTAGAGGTTCCAAACTGA

Protein sequence

MEPPNHRQISFFSFVPCSEPHIATPSPFDPHHPPHCHAHLISLYTFTPPRQPAFCRCASIFKSAGIEAFFFLLFISTSHLQSRTTLEVPN
Homology
[Close]
BLAST of CmaCh10G000320 vs. NCBI nr
Match: KAG6589353.1 (CASP-like protein 1F1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 3.8e-25
Identity = 59/64 (92.19%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 18  SEPHIATPSPFDPHHPPHCHAHLISLYTFTPPRQPAFCRCASIFKSAGIEAFFFLLFIST 77
           SEPHIATPSPF PH  PHCHAHLISLYTFTP RQPAFCRCASIFKSAGIEAFFFL FIST
Sbjct: 131 SEPHIATPSPFAPHRHPHCHAHLISLYTFTPSRQPAFCRCASIFKSAGIEAFFFLFFIST 190

Query: 78  SHLQ 82
           SHLQ
Sbjct: 191 SHLQ 194

The following BLAST results are available for this feature:
BLAST of CmaCh10G000320 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G000320 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh10G000320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589353.13.8e-2592.19CASP-like protein 1F1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh10G000320 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh10G000320.1CmaCh10G000320.1mRNA