CmaCh09G013040 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G013040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr09: 9096739 .. 9098877 (+)
RNA-Seq Expression	CmaCh09G013040
Synteny	CmaCh09G013040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCTTCCTCTCCTGAATACATCCTCAGAGGTCTTTCTATATATAAGCTCCTGACATTCATACCTAAACAATGGAAAAATGTACCTGTGAGCAATGGTAGAGAATTTATGATTAATTCTATTTTTTATTCCCTTAAAAGCTTTGCCTCTCATGGTCAATTGTCCAAAGCATTTGAAGCCTTCTCCCTCGTTCAATTGCGCCGTAGTTATAATGATTCATTTGACCTCATCGTGCAATCCATCTCCATTCTTCTTGTATCATGCACCACTTGTAGCTCACTCCCGTCAGGTAAGCAACTTCATGGTCGCATTATCTCGTCAGGTCTTGAGGAAGACTCCATTTTGGTCCCCAAGCTTGTCACATTCTACTCGAGCTTTAAACTTCTGGCTGAGGCTCATACCCTTGTTGAGAATTCTAATTTATTTCACCCCTGTCCTTGGAATCTACTCATCACATCATATGTCAGAAATGAACTTCACGAGTCAGCCATTTTAGCTTACAAACAGATGTTGAGTAAAGGGGTCAGACCAGATAATTTCACTTTTCCCTCCATTTTGAAGGCTTGTGGTGAAACACAAAATCTGGGATTTGGTTTAGAAGTTCACAAGTGTATTAATTCTTGGTCAAATCAATGGAGTTTGTTTGTTCAGAATGCTCTGATATCTATGTATGGAAGATGTGGCGAGCTGGACACTGCACGTAACTTGTTCGACAATATGCTTGACCGGGATGCAGTATCGTGGAATTCCATGATCTCTTGTTATGCCTCCAAGGGTATGTGGAAGGAGGCATTTGAACTGTTTGACATCATGCAGAGTAAGTGTCTTGAAATTAACATTGTAACTTGGAATATTATAGCTGGAGGTTGCTTGCGCCTTGGTAAGTTTACTCGAGCTCTTAAGTTACTGTCTCAAATGAGAAATTTTGGTATTCATTTGGACGATGTAGCAATGATTATAGGTTTAGGTGCTTGTTCCCACATTGGTGCCATTAGATTAGGAAAGGAAATCCATGGCTTTACTATCAGACATTGTTATCATAAGTCATCCACTGTTCAAAACGCTTTACTTACCATGTATGCTCGTTGTAAAGACATCATGCGTGCATATATTTTGTTTCGATTAAATGATGACAAAAGTATAATCACGTGGAATTCCATGCTTTCTGGCCTCTCACATGTCGACCGGGTTGAGGACGCCCTGCGTCTGTTTAGAGAATTTTTACTATTTGGTGTAGAACCGAACTATGTGACGTTTGCTAGCATTCTTCCTCTTTGTGCTCGAGTTGCAGATTTACAACATGGGAGAGAATTTCACTGTTACATTACTAAACGCCAAGATTTTCAAGATTATTTGTTATTGTGGAATGCTTTGGTTGACATGTATGCAAGGTCGGGCAAGGTTATAGAAGCTAAAAGAGTTTTCGATTCATTAAGCAAGAAGGACGAAGTGACGTATACTTCCCTGATTGCAGGCTATGGCATGCAAGGAGAGGGGAGGAAAGCGCTAAGGCTGTTCGAAGAAATGAAAAGTGTCGATATCAAACCAGATCATATAACTATGGTTGCTGTCCTATCAGCTTGTAGTCACTCTGGTCTTGTGAAACAGGGTGAAGTTTTATTTGCAGAGATGCAAAGTGTGCATGGACTAAGCCCTCATTTGGAACATTATGCTTGTATGGCAGACCTTTTTGGGAGGGTTGGTCTGTTGGACAGAGCAAAGGAGATTATCACGAGAATGCCTTATAGACCGACATCGGCTATGTGGGCGACTCTTATCGGAGCATGTTGCATCCATCGAAACACGGATATCGGGGAATGGGCTGCAGAGAAACTTCTGGAAATGAAGCCTGAACATTCTGGTTACTATGTCTTGATTGCTAACATGTATGCTGCTGCAGGTTCTTGGAGTAAGTTGGCAAAAATAAGGACTCTCATGAGAGATTATGGTGTGGCCAAAGCTCCTGGTTGTTCTTGGGTTGAAGTTGGCTCAGAATTCGTCTCGTTCTTGGTTGGGGACACTTCTAATCCTCAAGCCCTTGAATCTAAACACTTGTTAGACGATTTGAACGATGTAATGAAACACGGTACTCTAGTGATGACAGATGATTATGATATCGGCAATGACGTTTTTTGA

mRNA sequence

ATGTCATCTTCCTCTCCTGAATACATCCTCAGAGGTCTTTCTATATATAAGCTCCTGACATTCATACCTAAACAATGGAAAAATGTACCTGTGAGCAATGGTAGAGAATTTATGATTAATTCTATTTTTTATTCCCTTAAAAGCTTTGCCTCTCATGGTCAATTGTCCAAAGCATTTGAAGCCTTCTCCCTCGTTCAATTGCGCCGTAGTTATAATGATTCATTTGACCTCATCGTGCAATCCATCTCCATTCTTCTTGTATCATGCACCACTTGTAGCTCACTCCCGTCAGGTAAGCAACTTCATGGTCGCATTATCTCGTCAGGTCTTGAGGAAGACTCCATTTTGGTCCCCAAGCTTGTCACATTCTACTCGAGCTTTAAACTTCTGGCTGAGGCTCATACCCTTGTTGAGAATTCTAATTTATTTCACCCCTGTCCTTGGAATCTACTCATCACATCATATGTCAGAAATGAACTTCACGAGTCAGCCATTTTAGCTTACAAACAGATGTTGAGTAAAGGGGTCAGACCAGATAATTTCACTTTTCCCTCCATTTTGAAGGCTTGTGGTGAAACACAAAATCTGGGATTTGGTTTAGAAGTTCACAAGTGTATTAATTCTTGGTCAAATCAATGGAGTTTGTTTGTTCAGAATGCTCTGATATCTATGTATGGAAGATGTGGCGAGCTGGACACTGCACGTAACTTGTTCGACAATATGCTTGACCGGGATGCAGTATCGTGGAATTCCATGATCTCTTGTTATGCCTCCAAGGGTATGTGGAAGGAGGCATTTGAACTGTTTGACATCATGCAGAGTAAGTGTCTTGAAATTAACATTGTAACTTGGAATATTATAGCTGGAGGTTGCTTGCGCCTTGGTAAGTTTACTCGAGCTCTTAAGTTACTGTCTCAAATGAGAAATTTTGGTATTCATTTGGACGATGTAGCAATGATTATAGGTTTAGGTGCTTGTTCCCACATTGGTGCCATTAGATTAGGAAAGGAAATCCATGGCTTTACTATCAGACATTGTTATCATAAGTCATCCACTGTTCAAAACGCTTTACTTACCATGTATGCTCGTTGTAAAGACATCATGCGTGCATATATTTTGTTTCGATTAAATGATGACAAAAGTATAATCACGTGGAATTCCATGCTTTCTGGCCTCTCACATGTCGACCGGGTTGAGGACGCCCTGCGTCTGTTTAGAGAATTTTTACTATTTGGTGTAGAACCGAACTATGTGACGTTTGCTAGCATTCTTCCTCTTTGTGCTCGAGTTGCAGATTTACAACATGGGAGAGAATTTCACTGTTACATTACTAAACGCCAAGATTTTCAAGATTATTTGTTATTGTGGAATGCTTTGGTTGACATGTATGCAAGGTCGGGCAAGGTTATAGAAGCTAAAAGAGTTTTCGATTCATTAAGCAAGAAGGACGAAGTGACGTATACTTCCCTGATTGCAGGCTATGGCATGCAAGGAGAGGGGAGGAAAGCGCTAAGGCTGTTCGAAGAAATGAAAAGTGTCGATATCAAACCAGATCATATAACTATGGTTGCTGTCCTATCAGCTTGTAGTCACTCTGGTCTTGTGAAACAGGGTGAAGTTTTATTTGCAGAGATGCAAAGTGTGCATGGACTAAGCCCTCATTTGGAACATTATGCTTGTATGGCAGACCTTTTTGGGAGGGTTGGTCTGTTGGACAGAGCAAAGGAGATTATCACGAGAATGCCTTATAGACCGACATCGGCTATGTGGGCGACTCTTATCGGAGCATGTTGCATCCATCGAAACACGGATATCGGGGAATGGGCTGCAGAGAAACTTCTGGAAATGAAGCCTGAACATTCTGGTTACTATGTCTTGATTGCTAACATGTATGCTGCTGCAGGTTCTTGGAGTAAGTTGGCAAAAATAAGGACTCTCATGAGAGATTATGGTGTGGCCAAAGCTCCTGGTTGTTCTTGGGTTGAAGTTGGCTCAGAATTCGTCTCGTTCTTGGTTGGGGACACTTCTAATCCTCAAGCCCTTGAATCTAAACACTTGTTAGACGATTTGAACGATGTAATGAAACACGGTACTCTAGTGATGACAGATGATTATGATATCGGCAATGACGTTTTTTGA

Coding sequence (CDS)

ATGTCATCTTCCTCTCCTGAATACATCCTCAGAGGTCTTTCTATATATAAGCTCCTGACATTCATACCTAAACAATGGAAAAATGTACCTGTGAGCAATGGTAGAGAATTTATGATTAATTCTATTTTTTATTCCCTTAAAAGCTTTGCCTCTCATGGTCAATTGTCCAAAGCATTTGAAGCCTTCTCCCTCGTTCAATTGCGCCGTAGTTATAATGATTCATTTGACCTCATCGTGCAATCCATCTCCATTCTTCTTGTATCATGCACCACTTGTAGCTCACTCCCGTCAGGTAAGCAACTTCATGGTCGCATTATCTCGTCAGGTCTTGAGGAAGACTCCATTTTGGTCCCCAAGCTTGTCACATTCTACTCGAGCTTTAAACTTCTGGCTGAGGCTCATACCCTTGTTGAGAATTCTAATTTATTTCACCCCTGTCCTTGGAATCTACTCATCACATCATATGTCAGAAATGAACTTCACGAGTCAGCCATTTTAGCTTACAAACAGATGTTGAGTAAAGGGGTCAGACCAGATAATTTCACTTTTCCCTCCATTTTGAAGGCTTGTGGTGAAACACAAAATCTGGGATTTGGTTTAGAAGTTCACAAGTGTATTAATTCTTGGTCAAATCAATGGAGTTTGTTTGTTCAGAATGCTCTGATATCTATGTATGGAAGATGTGGCGAGCTGGACACTGCACGTAACTTGTTCGACAATATGCTTGACCGGGATGCAGTATCGTGGAATTCCATGATCTCTTGTTATGCCTCCAAGGGTATGTGGAAGGAGGCATTTGAACTGTTTGACATCATGCAGAGTAAGTGTCTTGAAATTAACATTGTAACTTGGAATATTATAGCTGGAGGTTGCTTGCGCCTTGGTAAGTTTACTCGAGCTCTTAAGTTACTGTCTCAAATGAGAAATTTTGGTATTCATTTGGACGATGTAGCAATGATTATAGGTTTAGGTGCTTGTTCCCACATTGGTGCCATTAGATTAGGAAAGGAAATCCATGGCTTTACTATCAGACATTGTTATCATAAGTCATCCACTGTTCAAAACGCTTTACTTACCATGTATGCTCGTTGTAAAGACATCATGCGTGCATATATTTTGTTTCGATTAAATGATGACAAAAGTATAATCACGTGGAATTCCATGCTTTCTGGCCTCTCACATGTCGACCGGGTTGAGGACGCCCTGCGTCTGTTTAGAGAATTTTTACTATTTGGTGTAGAACCGAACTATGTGACGTTTGCTAGCATTCTTCCTCTTTGTGCTCGAGTTGCAGATTTACAACATGGGAGAGAATTTCACTGTTACATTACTAAACGCCAAGATTTTCAAGATTATTTGTTATTGTGGAATGCTTTGGTTGACATGTATGCAAGGTCGGGCAAGGTTATAGAAGCTAAAAGAGTTTTCGATTCATTAAGCAAGAAGGACGAAGTGACGTATACTTCCCTGATTGCAGGCTATGGCATGCAAGGAGAGGGGAGGAAAGCGCTAAGGCTGTTCGAAGAAATGAAAAGTGTCGATATCAAACCAGATCATATAACTATGGTTGCTGTCCTATCAGCTTGTAGTCACTCTGGTCTTGTGAAACAGGGTGAAGTTTTATTTGCAGAGATGCAAAGTGTGCATGGACTAAGCCCTCATTTGGAACATTATGCTTGTATGGCAGACCTTTTTGGGAGGGTTGGTCTGTTGGACAGAGCAAAGGAGATTATCACGAGAATGCCTTATAGACCGACATCGGCTATGTGGGCGACTCTTATCGGAGCATGTTGCATCCATCGAAACACGGATATCGGGGAATGGGCTGCAGAGAAACTTCTGGAAATGAAGCCTGAACATTCTGGTTACTATGTCTTGATTGCTAACATGTATGCTGCTGCAGGTTCTTGGAGTAAGTTGGCAAAAATAAGGACTCTCATGAGAGATTATGGTGTGGCCAAAGCTCCTGGTTGTTCTTGGGTTGAAGTTGGCTCAGAATTCGTCTCGTTCTTGGTTGGGGACACTTCTAATCCTCAAGCCCTTGAATCTAAACACTTGTTAGACGATTTGAACGATGTAATGAAACACGGTACTCTAGTGATGACAGATGATTATGATATCGGCAATGACGTTTTTTGA

Protein sequence

MSSSSPEYILRGLSIYKLLTFIPKQWKNVPVSNGREFMINSIFYSLKSFASHGQLSKAFEAFSLVQLRRSYNDSFDLIVQSISILLVSCTTCSSLPSGKQLHGRIISSGLEEDSILVPKLVTFYSSFKLLAEAHTLVENSNLFHPCPWNLLITSYVRNELHESAILAYKQMLSKGVRPDNFTFPSILKACGETQNLGFGLEVHKCINSWSNQWSLFVQNALISMYGRCGELDTARNLFDNMLDRDAVSWNSMISCYASKGMWKEAFELFDIMQSKCLEINIVTWNIIAGGCLRLGKFTRALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHCYHKSSTVQNALLTMYARCKDIMRAYILFRLNDDKSIITWNSMLSGLSHVDRVEDALRLFREFLLFGVEPNYVTFASILPLCARVADLQHGREFHCYITKRQDFQDYLLLWNALVDMYARSGKVIEAKRVFDSLSKKDEVTYTSLIAGYGMQGEGRKALRLFEEMKSVDIKPDHITMVAVLSACSHSGLVKQGEVLFAEMQSVHGLSPHLEHYACMADLFGRVGLLDRAKEIITRMPYRPTSAMWATLIGACCIHRNTDIGEWAAEKLLEMKPEHSGYYVLIANMYAAAGSWSKLAKIRTLMRDYGVAKAPGCSWVEVGSEFVSFLVGDTSNPQALESKHLLDDLNDVMKHGTLVMTDDYDIGNDVF

Homology

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BLAST of CmaCh09G013040 vs. ExPASy Swiss-Prot
Match: Q9C9I6 (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E67 PE=2 SV=1)

HSP 1 Score: 803.1 bits (2073), Expect = 2.5e-231
Identity = 386/655 (58.93%), Postives = 495/655 (75.57%), Query Frame = 0


Query: 41  SIFYSLKSFASHGQLSKAFEAFSLVQLRRSYNDSFDLIVQSISILLVSCTTCSSLPSGKQ 100
           S+F SL   ASHG L  AF+ FSL++L+ S   S DL++ S + LL +C    +  +G Q
Sbjct: 5   SLFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQ 64

Query: 101 LHGRIISSGLEEDSILVPKLVTFYSSFKLLAEAHTLVENSNLFHPCPWNLLITSYVRNEL 160
           +H   ISSG+E  S+LVPKLVTFYS+F L  EA +++ENS++ HP PWN+LI SY +NEL
Sbjct: 65  VHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNEL 124

Query: 161 HESAILAYKQMLSKGVRPDNFTFPSILKACGETQNLGFGLEVHKCINSWSNQWSLFVQNA 220
            E  I AYK+M+SKG+RPD FT+PS+LKACGET ++ FG  VH  I   S + SL+V NA
Sbjct: 125 FEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNA 184

Query: 221 LISMYGRCGELDTARNLFDNMLDRDAVSWNSMISCYASKGMWKEAFELFDIMQSKCLEIN 280
           LISMY R   +  AR LFD M +RDAVSWN++I+CYAS+GMW EAFELFD M    +E++
Sbjct: 185 LISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVS 244

Query: 281 IVTWNIIAGGCLRLGKFTRALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHG 340
           ++TWNII+GGCL+ G +  AL L+S+MRNF   LD VAMIIGL ACS IGAIRLGKEIHG
Sbjct: 245 VITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHG 304

Query: 341 FTIRHCYHKSSTVQNALLTMYARCKDIMRAYILFRLNDDKSIITWNSMLSGLSHVDRVED 400
             I   Y     V+N L+TMY++CKD+  A I+FR  ++ S+ TWNS++SG + +++ E+
Sbjct: 305 LAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEE 364

Query: 401 ALRLFREFLLFGVEPNYVTFASILPLCARVADLQHGREFHCYITKRQDFQDYLLLWNALV 460
           A  L RE L+ G +PN +T ASILPLCAR+A+LQHG+EFHCYI +R+ F+DY +LWN+LV
Sbjct: 365 ASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLV 424

Query: 461 DMYARSGKVIEAKRVFDSLSKKDEVTYTSLIAGYGMQGEGRKALRLFEEMKSVDIKPDHI 520
           D+YA+SGK++ AK+V D +SK+DEVTYTSLI GYG QGEG  AL LF+EM    IKPDH+
Sbjct: 425 DVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHV 484

Query: 521 TMVAVLSACSHSGLVKQGEVLFAEMQSVHGLSPHLEHYACMADLFGRVGLLDRAKEIITR 580
           T+VAVLSACSHS LV +GE LF +MQ  +G+ P L+H++CM DL+GR G L +AK+II  
Sbjct: 485 TVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHN 544

Query: 581 MPYRPTSAMWATLIGACCIHRNTDIGEWAAEKLLEMKPEHSGYYVLIANMYAAAGSWSKL 640
           MPY+P+ A WATL+ AC IH NT IG+WAAEKLLEMKPE+ GYYVLIANMYAAAGSWSKL
Sbjct: 545 MPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKL 604

Query: 641 AKIRTLMRDYGVAKAPGCSWVEVGSEFVSFLVGDTSNPQALESKHLLDDLNDVMK 696
           A++RT+MRD GV K PGC+W++  S F  F VGDTS+P+A  +  LLD LN +MK
Sbjct: 605 AEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMK 659

[Close]

BLAST of CmaCh09G013040 vs. ExPASy Swiss-Prot
Match: Q4V389 (Pentatricopeptide repeat-containing protein At1g22830 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E24 PE=2 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 3.0e-200
Identity = 351/688 (51.02%), Postives = 472/688 (68.60%), Query Frame = 0


Query: 1   MSSSSPEYILRGLSIYKLLTFIPKQWKNVP-------VSNGREFMINSIFYSLKSFASHG 60
           M SS    ILRGL++ ++  FIP+ WK +P        ++  E +   +F S +   SHG
Sbjct: 1   MPSSPSRSILRGLTVSEICKFIPQSWKQLPRPISETSKTHDDESVPQVLFNSFRHCISHG 60

Query: 61  QLSKAFEAFSLVQLRRSYNDSFDLIVQSISILLVSCTTCSSLPSGKQLHGRIISSGLEED 120
           QL +AF  FSL+   R  + S + ++ S + LL +C   +    G+QLH   ISSGLE D
Sbjct: 61  QLYEAFRTFSLL---RYQSGSHEFVLYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFD 120

Query: 121 SILVPKLVTFYSSFKLLAEAHTLVENSNLFHPCPWNLLITSYVRNELHESAILAYKQMLS 180
           S+LVPKLVTFYS+F LL EA T+ ENS + HP PWN+LI SY+RN+  + ++  YK+M+S
Sbjct: 121 SVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMS 180

Query: 181 KGVRPDNFTFPSILKACGETQNLGFGLEVHKCINSWSNQWSLFVQNALISMYGRCGELDT 240
           KG+R D FT+PS++KAC    +  +G  VH  I   S++ +L+V NALISMY R G++D 
Sbjct: 181 KGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDV 240

Query: 241 ARNLFDNMLDRDAVSWNSMISCYASKGMWKEAFELFDIMQSKCLEINIVTWNIIAGGCLR 300
           AR LFD M +RDAVSWN++I+CY S+    EAF+L D M    +E +IVTWN IAGGCL 
Sbjct: 241 ARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLE 300

Query: 301 LGKFTRALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHC--YHKSS 360
            G +  AL  +  MRN  + +  VAMI GL ACSHIGA++ GK  H   IR C   H   
Sbjct: 301 AGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDID 360

Query: 361 TVQNALLTMYARCKDIMRAYILFRLNDDKSIITWNSMLSGLSHVDRVEDALRLFREFLLF 420
            V+N+L+TMY+RC D+  A+I+F+  +  S+ TWNS++SG ++ +R E+   L +E LL 
Sbjct: 361 NVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLS 420

Query: 421 GVEPNYVTFASILPLCARVADLQHGREFHCYITKRQDFQDYLLLWNALVDMYARSGKVIE 480
           G  PN++T ASILPL ARV +LQHG+EFHCYI +RQ ++D L+LWN+LVDMYA+SG++I 
Sbjct: 421 GFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIA 480

Query: 481 AKRVFDSLSKKDEVTYTSLIAGYGMQGEGRKALRLFEEMKSVDIKPDHITMVAVLSACSH 540
           AKRVFDS+ K+D+VTYTSLI GYG  G+G  AL  F++M    IKPDH+TMVAVLSACSH
Sbjct: 481 AKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSH 540

Query: 541 SGLVKQGEVLFAEMQSVHGLSPHLEHYACMADLFGRVGLLDRAKEIITRMPYRPTSAMWA 600
           S LV++G  LF +M+ V G+   LEHY+CM DL+ R G LD+A++I   +PY P+SAM A
Sbjct: 541 SNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCA 600

Query: 601 TLIGACCIHRNTDIGEWAAEK-LLEMKPEHSGYYVLIANMYAAAGSWSKLAKIRTLMRDY 660
           TL+ AC IH NT+IGEWAA+K LLE KPEH G+Y+L+A+MYA  GSWSKL  ++TL+ D 
Sbjct: 601 TLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDL 660

Query: 661 GVAKAPGCSWVEVGSEFVSFLVGDTSNP 679
           GV KA   + +E  SE    L G+ + P
Sbjct: 661 GVQKAHEFALMETDSE----LDGENNKP 681

[Close]

BLAST of CmaCh09G013040 vs. ExPASy Swiss-Prot
Match: Q9LFL5 (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 2.8e-118
Identity = 229/675 (33.93%), Postives = 367/675 (54.37%), Query Frame = 0


Query: 27  KNVPVSNGREFMINSIFYSLKSFASHGQLSKAFEAFSLVQLRRSYNDSFDLIVQSISILL 86
           +  P S+   +  NS+   ++S+  +G  +K    F L+       D++     +   + 
Sbjct: 83  RRFPPSDAGVYHWNSL---IRSYGDNGCANKCLYLFGLMHSLSWTPDNY-----TFPFVF 142

Query: 87  VSCTTCSSLPSGKQLHGRIISSGLEEDSILVPKLVTFYSSFKLLAEAHTLVENSNLFHPC 146
            +C   SS+  G+  H   + +G   +  +   LV  YS  + L++A  + +  +++   
Sbjct: 143 KACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVV 202

Query: 147 PWNLLITSYVRNELHESAILAYKQMLSK-GVRPDNFTFPSILKACGETQNLGFGLEVHKC 206
            WN +I SY +    + A+  + +M ++ G RPDN T  ++L  C        G ++H  
Sbjct: 203 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCF 262

Query: 207 INSWSNQWSLFVQNALISMYGRCGELDTARNLFDNMLDRDAVSWNSMISCYASKGMWKEA 266
             +     ++FV N L+ MY +CG +D A  +F NM  +D VSWN+M++ Y+  G +++A
Sbjct: 263 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 322

Query: 267 FELFDIMQSKCLEINIVTWNIIAGGCLRLGKFTRALKLLSQMRNFGIHLDDVAMIIGLGA 326
             LF+ MQ + +++++VTW+    G  + G    AL +  QM + GI  ++V +I  L  
Sbjct: 323 VRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSG 382

Query: 327 CSHIGAIRLGKEIHGFTIRH-------CYHKSSTVQNALLTMYARCKDIMRAYILF--RL 386
           C+ +GA+  GKEIH + I++        +   + V N L+ MYA+CK +  A  +F    
Sbjct: 383 CASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLS 442

Query: 387 NDDKSIITWNSMLSGLSHVDRVEDALRLFREFLLFGVE--PNYVTFASILPLCARVADLQ 446
             ++ ++TW  M+ G S       AL L  E      +  PN  T +  L  CA +A L+
Sbjct: 443 PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALR 502

Query: 447 HGREFHCYITKRQDFQDYLLLWNALVDMYARSGKVIEAKRVFDSLSKKDEVTYTSLIAGY 506
            G++ H Y  + Q     L + N L+DMYA+ G + +A+ VFD++  K+EVT+TSL+ GY
Sbjct: 503 IGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGY 562

Query: 507 GMQGEGRKALRLFEEMKSVDIKPDHITMVAVLSACSHSGLVKQGEVLFAEMQSVHGLSPH 566
           GM G G +AL +F+EM+ +  K D +T++ VL ACSHSG++ QG   F  M++V G+SP 
Sbjct: 563 GMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPG 622

Query: 567 LEHYACMADLFGRVGLLDRAKEIITRMPYRPTSAMWATLIGACCIHRNTDIGEWAAEKLL 626
            EHYAC+ DL GR G L+ A  +I  MP  P   +W   +  C IH   ++GE+AAEK+ 
Sbjct: 623 PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKIT 682

Query: 627 EMKPEHSGYYVLIANMYAAAGSWSKLAKIRTLMRDYGVAKAPGCSWVEVGSEFVSFLVGD 686
           E+   H G Y L++N+YA AG W  + +IR+LMR  GV K PGCSWVE      +F VGD
Sbjct: 683 ELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGD 742

Query: 687 TSNPQALESKHLLDD 690
            ++P A E   +L D
Sbjct: 743 KTHPHAKEIYQVLLD 749

[Close]

BLAST of CmaCh09G013040 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.0e-112
Identity = 217/648 (33.49%), Postives = 359/648 (55.40%), Query Frame = 0


Query: 67  LRRSYNDSFDLIVQSISILLVSCTTCSSLPSGKQLHGRIISSGLEEDSILVPKLVTF--- 126
           L  S +  +D I    S+ L+    C +L S + +H ++I  GL   +  + KL+ F   
Sbjct: 20  LPSSSDPPYDSIRNHPSLSLLH--NCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCIL 79

Query: 127 ----------YSSFKLLAEAHTLVENSNLFHPCPWNLLITSYVRNELHESAILAYKQMLS 186
                      S FK + E + L+          WN +   +  +    SA+  Y  M+S
Sbjct: 80  SPHFEGLPYAISVFKTIQEPNLLI----------WNTMFRGHALSSDPVSALKLYVCMIS 139

Query: 187 KGVRPDNFTFPSILKACGETQNLGFGLEVHKCINSWSNQWSLFVQNALISMYGRCGELDT 246
            G+ P+++TFP +LK+C +++    G ++H  +        L+V  +LISMY + G L+ 
Sbjct: 140 LGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLED 199

Query: 247 ARNLFDNMLDRDAVSWNSMISCYASKGMWKEAFELFDIMQSKCLEINIVTWNIIAGGCLR 306
           A  +FD    RD VS+ ++I  YAS+G  + A +LFD +  K    ++V+WN +  G   
Sbjct: 200 AHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DVVSWNAMISGYAE 259

Query: 307 LGKFTRALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHCYHKSSTV 366
            G +  AL+L   M    +  D+  M+  + AC+  G+I LG+++H +   H +  +  +
Sbjct: 260 TGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKI 319

Query: 367 QNALLTMYARCKDIMRAYILFRLNDDKSIITWNSMLSGLSHVDRVEDALRLFREFLLFGV 426
            NAL+ +Y++C ++  A  LF     K +I+WN+++ G +H++  ++AL LF+E L  G 
Sbjct: 320 VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 379

Query: 427 EPNYVTFASILPLCARVADLQHGREFHCYITKR-QDFQDYLLLWNALVDMYARSGKVIEA 486
            PN VT  SILP CA +  +  GR  H YI KR +   +   L  +L+DMYA+ G +  A
Sbjct: 380 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 439

Query: 487 KRVFDSLSKKDEVTYTSLIAGYGMQGEGRKALRLFEEMKSVDIKPDHITMVAVLSACSHS 546
            +VF+S+  K   ++ ++I G+ M G    +  LF  M+ + I+PD IT V +LSACSHS
Sbjct: 440 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 499

Query: 547 GLVKQGEVLFAEMQSVHGLSPHLEHYACMADLFGRVGLLDRAKEIITRMPYRPTSAMWAT 606
           G++  G  +F  M   + ++P LEHY CM DL G  GL   A+E+I  M   P   +W +
Sbjct: 500 GMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCS 559

Query: 607 LIGACCIHRNTDIGEWAAEKLLEMKPEHSGYYVLIANMYAAAGSWSKLAKIRTLMRDYGV 666
           L+ AC +H N ++GE  AE L++++PE+ G YVL++N+YA+AG W+++AK R L+ D G+
Sbjct: 560 LLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 619

Query: 667 AKAPGCSWVEVGSEFVSFLVGDTSNPQALESKHLLDDLNDVMKHGTLV 701
            K PGCS +E+ S    F++GD  +P+  E   +L+++  +++    V
Sbjct: 620 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651

[Close]

BLAST of CmaCh09G013040 vs. ExPASy Swiss-Prot
Match: Q9LNU6 (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 388.3 bits (996), Expect = 1.9e-106
Identity = 204/639 (31.92%), Postives = 341/639 (53.36%), Query Frame = 0


Query: 93  SSLPSGKQLHGRIISSGLEEDSILVPKLVTFYSSFKLLAEAHTLVENSNLFHPCPWNLLI 152
           SSL    Q H RI+ SG + D  +  KL+  YS++    +A  ++++        ++ LI
Sbjct: 29  SSLSKTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLI 88

Query: 153 TSYVRNELHESAILAYKQMLSKGVRPDNFTFPSILKACGETQNLGFGLEVHKCINSWSN- 212
            +  + +L   +I  + +M S G+ PD+   P++ K C E      G ++H C++  S  
Sbjct: 89  YALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIH-CVSCVSGL 148

Query: 213 QWSLFVQNALISMYGRCGELDTARNLFDNMLDRDAVSWNSMISCYASKGMWKEAFELFDI 272
               FVQ ++  MY RCG +  AR +FD M D+D V+ ++++  YA KG  +E   +   
Sbjct: 149 DMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSE 208

Query: 273 MQSKCLEINIVTWNIIAGGCLRLGKFTRALKLLSQMRNFGIHLDDVAMIIGLGACSHIGA 332
           M+S  +E NIV+WN I  G  R G    A+ +  ++ + G   D V +   L +      
Sbjct: 209 MESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEM 268

Query: 333 IRLGKEIHGFTIRHCYHKSSTVQNALLTMYARC-----------------KDIMRAYI-- 392
           + +G+ IHG+ I+    K   V +A++ MY +                    +  AYI  
Sbjct: 269 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 328

Query: 393 ------------LFRLNDDK----SIITWNSMLSGLSHVDRVEDALRLFREFLLFGVEPN 452
                       +F L  ++    ++++W S+++G +   +  +AL LFRE  + GV+PN
Sbjct: 329 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPN 388

Query: 453 YVTFASILPLCARVADLQHGREFHCYITKRQDFQDYLLLWNALVDMYARSGKVIEAKRVF 512
           +VT  S+LP C  +A L HGR  H +   R    D + + +AL+DMYA+ G++  ++ VF
Sbjct: 389 HVTIPSMLPACGNIAALGHGRSTHGFAV-RVHLLDNVHVGSALIDMYAKCGRINLSQIVF 448

Query: 513 DSLSKKDEVTYTSLIAGYGMQGEGRKALRLFEEMKSVDIKPDHITMVAVLSACSHSGLVK 572
           + +  K+ V + SL+ G+ M G+ ++ + +FE +    +KPD I+  ++LSAC   GL  
Sbjct: 449 NMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTD 508

Query: 573 QGEVLFAEMQSVHGLSPHLEHYACMADLFGRVGLLDRAKEIITRMPYRPTSAMWATLIGA 632
           +G   F  M   +G+ P LEHY+CM +L GR G L  A ++I  MP+ P S +W  L+ +
Sbjct: 509 EGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNS 568

Query: 633 CCIHRNTDIGEWAAEKLLEMKPEHSGYYVLIANMYAAAGSWSKLAKIRTLMRDYGVAKAP 692
           C +  N D+ E AAEKL  ++PE+ G YVL++N+YAA G W+++  IR  M   G+ K P
Sbjct: 569 CRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNP 628

Query: 693 GCSWVEVGSEFVSFLVGDTSNPQALESKHLLDDLNDVMK 696
           GCSW++V +   + L GD S+PQ  +    +D+++  M+
Sbjct: 629 GCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMR 665

[Close]

BLAST of CmaCh09G013040 vs. TAIR 10
Match: AT1G71490.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 803.1 bits (2073), Expect = 1.8e-232
Identity = 386/655 (58.93%), Postives = 495/655 (75.57%), Query Frame = 0


Query: 41  SIFYSLKSFASHGQLSKAFEAFSLVQLRRSYNDSFDLIVQSISILLVSCTTCSSLPSGKQ 100
           S+F SL   ASHG L  AF+ FSL++L+ S   S DL++ S + LL +C    +  +G Q
Sbjct: 5   SLFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQ 64

Query: 101 LHGRIISSGLEEDSILVPKLVTFYSSFKLLAEAHTLVENSNLFHPCPWNLLITSYVRNEL 160
           +H   ISSG+E  S+LVPKLVTFYS+F L  EA +++ENS++ HP PWN+LI SY +NEL
Sbjct: 65  VHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNEL 124

Query: 161 HESAILAYKQMLSKGVRPDNFTFPSILKACGETQNLGFGLEVHKCINSWSNQWSLFVQNA 220
            E  I AYK+M+SKG+RPD FT+PS+LKACGET ++ FG  VH  I   S + SL+V NA
Sbjct: 125 FEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNA 184

Query: 221 LISMYGRCGELDTARNLFDNMLDRDAVSWNSMISCYASKGMWKEAFELFDIMQSKCLEIN 280
           LISMY R   +  AR LFD M +RDAVSWN++I+CYAS+GMW EAFELFD M    +E++
Sbjct: 185 LISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVS 244

Query: 281 IVTWNIIAGGCLRLGKFTRALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHG 340
           ++TWNII+GGCL+ G +  AL L+S+MRNF   LD VAMIIGL ACS IGAIRLGKEIHG
Sbjct: 245 VITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHG 304

Query: 341 FTIRHCYHKSSTVQNALLTMYARCKDIMRAYILFRLNDDKSIITWNSMLSGLSHVDRVED 400
             I   Y     V+N L+TMY++CKD+  A I+FR  ++ S+ TWNS++SG + +++ E+
Sbjct: 305 LAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEE 364

Query: 401 ALRLFREFLLFGVEPNYVTFASILPLCARVADLQHGREFHCYITKRQDFQDYLLLWNALV 460
           A  L RE L+ G +PN +T ASILPLCAR+A+LQHG+EFHCYI +R+ F+DY +LWN+LV
Sbjct: 365 ASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLV 424

Query: 461 DMYARSGKVIEAKRVFDSLSKKDEVTYTSLIAGYGMQGEGRKALRLFEEMKSVDIKPDHI 520
           D+YA+SGK++ AK+V D +SK+DEVTYTSLI GYG QGEG  AL LF+EM    IKPDH+
Sbjct: 425 DVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHV 484

Query: 521 TMVAVLSACSHSGLVKQGEVLFAEMQSVHGLSPHLEHYACMADLFGRVGLLDRAKEIITR 580
           T+VAVLSACSHS LV +GE LF +MQ  +G+ P L+H++CM DL+GR G L +AK+II  
Sbjct: 485 TVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHN 544

Query: 581 MPYRPTSAMWATLIGACCIHRNTDIGEWAAEKLLEMKPEHSGYYVLIANMYAAAGSWSKL 640
           MPY+P+ A WATL+ AC IH NT IG+WAAEKLLEMKPE+ GYYVLIANMYAAAGSWSKL
Sbjct: 545 MPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKL 604

Query: 641 AKIRTLMRDYGVAKAPGCSWVEVGSEFVSFLVGDTSNPQALESKHLLDDLNDVMK 696
           A++RT+MRD GV K PGC+W++  S F  F VGDTS+P+A  +  LLD LN +MK
Sbjct: 605 AEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMK 659

[Close]

BLAST of CmaCh09G013040 vs. TAIR 10
Match: AT1G22830.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 699.9 bits (1805), Expect = 2.1e-201
Identity = 351/688 (51.02%), Postives = 472/688 (68.60%), Query Frame = 0


Query: 1   MSSSSPEYILRGLSIYKLLTFIPKQWKNVP-------VSNGREFMINSIFYSLKSFASHG 60
           M SS    ILRGL++ ++  FIP+ WK +P        ++  E +   +F S +   SHG
Sbjct: 1   MPSSPSRSILRGLTVSEICKFIPQSWKQLPRPISETSKTHDDESVPQVLFNSFRHCISHG 60

Query: 61  QLSKAFEAFSLVQLRRSYNDSFDLIVQSISILLVSCTTCSSLPSGKQLHGRIISSGLEED 120
           QL +AF  FSL+   R  + S + ++ S + LL +C   +    G+QLH   ISSGLE D
Sbjct: 61  QLYEAFRTFSLL---RYQSGSHEFVLYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFD 120

Query: 121 SILVPKLVTFYSSFKLLAEAHTLVENSNLFHPCPWNLLITSYVRNELHESAILAYKQMLS 180
           S+LVPKLVTFYS+F LL EA T+ ENS + HP PWN+LI SY+RN+  + ++  YK+M+S
Sbjct: 121 SVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMS 180

Query: 181 KGVRPDNFTFPSILKACGETQNLGFGLEVHKCINSWSNQWSLFVQNALISMYGRCGELDT 240
           KG+R D FT+PS++KAC    +  +G  VH  I   S++ +L+V NALISMY R G++D 
Sbjct: 181 KGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDV 240

Query: 241 ARNLFDNMLDRDAVSWNSMISCYASKGMWKEAFELFDIMQSKCLEINIVTWNIIAGGCLR 300
           AR LFD M +RDAVSWN++I+CY S+    EAF+L D M    +E +IVTWN IAGGCL 
Sbjct: 241 ARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLE 300

Query: 301 LGKFTRALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHC--YHKSS 360
            G +  AL  +  MRN  + +  VAMI GL ACSHIGA++ GK  H   IR C   H   
Sbjct: 301 AGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDID 360

Query: 361 TVQNALLTMYARCKDIMRAYILFRLNDDKSIITWNSMLSGLSHVDRVEDALRLFREFLLF 420
            V+N+L+TMY+RC D+  A+I+F+  +  S+ TWNS++SG ++ +R E+   L +E LL 
Sbjct: 361 NVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLS 420

Query: 421 GVEPNYVTFASILPLCARVADLQHGREFHCYITKRQDFQDYLLLWNALVDMYARSGKVIE 480
           G  PN++T ASILPL ARV +LQHG+EFHCYI +RQ ++D L+LWN+LVDMYA+SG++I 
Sbjct: 421 GFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIA 480

Query: 481 AKRVFDSLSKKDEVTYTSLIAGYGMQGEGRKALRLFEEMKSVDIKPDHITMVAVLSACSH 540
           AKRVFDS+ K+D+VTYTSLI GYG  G+G  AL  F++M    IKPDH+TMVAVLSACSH
Sbjct: 481 AKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSH 540

Query: 541 SGLVKQGEVLFAEMQSVHGLSPHLEHYACMADLFGRVGLLDRAKEIITRMPYRPTSAMWA 600
           S LV++G  LF +M+ V G+   LEHY+CM DL+ R G LD+A++I   +PY P+SAM A
Sbjct: 541 SNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCA 600

Query: 601 TLIGACCIHRNTDIGEWAAEK-LLEMKPEHSGYYVLIANMYAAAGSWSKLAKIRTLMRDY 660
           TL+ AC IH NT+IGEWAA+K LLE KPEH G+Y+L+A+MYA  GSWSKL  ++TL+ D 
Sbjct: 601 TLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDL 660

Query: 661 GVAKAPGCSWVEVGSEFVSFLVGDTSNP 679
           GV KA   + +E  SE    L G+ + P
Sbjct: 661 GVQKAHEFALMETDSE----LDGENNKP 681

[Close]

BLAST of CmaCh09G013040 vs. TAIR 10
Match: AT1G22830.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 699.9 bits (1805), Expect = 2.1e-201
Identity = 351/688 (51.02%), Postives = 472/688 (68.60%), Query Frame = 0


Query: 1   MSSSSPEYILRGLSIYKLLTFIPKQWKNVP-------VSNGREFMINSIFYSLKSFASHG 60
           M SS    ILRGL++ ++  FIP+ WK +P        ++  E +   +F S +   SHG
Sbjct: 1   MPSSPSRSILRGLTVSEICKFIPQSWKQLPRPISETSKTHDDESVPQVLFNSFRHCISHG 60

Query: 61  QLSKAFEAFSLVQLRRSYNDSFDLIVQSISILLVSCTTCSSLPSGKQLHGRIISSGLEED 120
           QL +AF  FSL+   R  + S + ++ S + LL +C   +    G+QLH   ISSGLE D
Sbjct: 61  QLYEAFRTFSLL---RYQSGSHEFVLYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFD 120

Query: 121 SILVPKLVTFYSSFKLLAEAHTLVENSNLFHPCPWNLLITSYVRNELHESAILAYKQMLS 180
           S+LVPKLVTFYS+F LL EA T+ ENS + HP PWN+LI SY+RN+  + ++  YK+M+S
Sbjct: 121 SVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMS 180

Query: 181 KGVRPDNFTFPSILKACGETQNLGFGLEVHKCINSWSNQWSLFVQNALISMYGRCGELDT 240
           KG+R D FT+PS++KAC    +  +G  VH  I   S++ +L+V NALISMY R G++D 
Sbjct: 181 KGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDV 240

Query: 241 ARNLFDNMLDRDAVSWNSMISCYASKGMWKEAFELFDIMQSKCLEINIVTWNIIAGGCLR 300
           AR LFD M +RDAVSWN++I+CY S+    EAF+L D M    +E +IVTWN IAGGCL 
Sbjct: 241 ARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLE 300

Query: 301 LGKFTRALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHC--YHKSS 360
            G +  AL  +  MRN  + +  VAMI GL ACSHIGA++ GK  H   IR C   H   
Sbjct: 301 AGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDID 360

Query: 361 TVQNALLTMYARCKDIMRAYILFRLNDDKSIITWNSMLSGLSHVDRVEDALRLFREFLLF 420
            V+N+L+TMY+RC D+  A+I+F+  +  S+ TWNS++SG ++ +R E+   L +E LL 
Sbjct: 361 NVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLS 420

Query: 421 GVEPNYVTFASILPLCARVADLQHGREFHCYITKRQDFQDYLLLWNALVDMYARSGKVIE 480
           G  PN++T ASILPL ARV +LQHG+EFHCYI +RQ ++D L+LWN+LVDMYA+SG++I 
Sbjct: 421 GFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIA 480

Query: 481 AKRVFDSLSKKDEVTYTSLIAGYGMQGEGRKALRLFEEMKSVDIKPDHITMVAVLSACSH 540
           AKRVFDS+ K+D+VTYTSLI GYG  G+G  AL  F++M    IKPDH+TMVAVLSACSH
Sbjct: 481 AKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSH 540

Query: 541 SGLVKQGEVLFAEMQSVHGLSPHLEHYACMADLFGRVGLLDRAKEIITRMPYRPTSAMWA 600
           S LV++G  LF +M+ V G+   LEHY+CM DL+ R G LD+A++I   +PY P+SAM A
Sbjct: 541 SNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCA 600

Query: 601 TLIGACCIHRNTDIGEWAAEK-LLEMKPEHSGYYVLIANMYAAAGSWSKLAKIRTLMRDY 660
           TL+ AC IH NT+IGEWAA+K LLE KPEH G+Y+L+A+MYA  GSWSKL  ++TL+ D 
Sbjct: 601 TLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDL 660

Query: 661 GVAKAPGCSWVEVGSEFVSFLVGDTSNP 679
           GV KA   + +E  SE    L G+ + P
Sbjct: 661 GVQKAHEFALMETDSE----LDGENNKP 681

[Close]

BLAST of CmaCh09G013040 vs. TAIR 10
Match: AT5G16860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 427.6 bits (1098), Expect = 2.0e-119
Identity = 229/675 (33.93%), Postives = 367/675 (54.37%), Query Frame = 0


Query: 27  KNVPVSNGREFMINSIFYSLKSFASHGQLSKAFEAFSLVQLRRSYNDSFDLIVQSISILL 86
           +  P S+   +  NS+   ++S+  +G  +K    F L+       D++     +   + 
Sbjct: 83  RRFPPSDAGVYHWNSL---IRSYGDNGCANKCLYLFGLMHSLSWTPDNY-----TFPFVF 142

Query: 87  VSCTTCSSLPSGKQLHGRIISSGLEEDSILVPKLVTFYSSFKLLAEAHTLVENSNLFHPC 146
            +C   SS+  G+  H   + +G   +  +   LV  YS  + L++A  + +  +++   
Sbjct: 143 KACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVV 202

Query: 147 PWNLLITSYVRNELHESAILAYKQMLSK-GVRPDNFTFPSILKACGETQNLGFGLEVHKC 206
            WN +I SY +    + A+  + +M ++ G RPDN T  ++L  C        G ++H  
Sbjct: 203 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCF 262

Query: 207 INSWSNQWSLFVQNALISMYGRCGELDTARNLFDNMLDRDAVSWNSMISCYASKGMWKEA 266
             +     ++FV N L+ MY +CG +D A  +F NM  +D VSWN+M++ Y+  G +++A
Sbjct: 263 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 322

Query: 267 FELFDIMQSKCLEINIVTWNIIAGGCLRLGKFTRALKLLSQMRNFGIHLDDVAMIIGLGA 326
             LF+ MQ + +++++VTW+    G  + G    AL +  QM + GI  ++V +I  L  
Sbjct: 323 VRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSG 382

Query: 327 CSHIGAIRLGKEIHGFTIRH-------CYHKSSTVQNALLTMYARCKDIMRAYILF--RL 386
           C+ +GA+  GKEIH + I++        +   + V N L+ MYA+CK +  A  +F    
Sbjct: 383 CASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLS 442

Query: 387 NDDKSIITWNSMLSGLSHVDRVEDALRLFREFLLFGVE--PNYVTFASILPLCARVADLQ 446
             ++ ++TW  M+ G S       AL L  E      +  PN  T +  L  CA +A L+
Sbjct: 443 PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALR 502

Query: 447 HGREFHCYITKRQDFQDYLLLWNALVDMYARSGKVIEAKRVFDSLSKKDEVTYTSLIAGY 506
            G++ H Y  + Q     L + N L+DMYA+ G + +A+ VFD++  K+EVT+TSL+ GY
Sbjct: 503 IGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGY 562

Query: 507 GMQGEGRKALRLFEEMKSVDIKPDHITMVAVLSACSHSGLVKQGEVLFAEMQSVHGLSPH 566
           GM G G +AL +F+EM+ +  K D +T++ VL ACSHSG++ QG   F  M++V G+SP 
Sbjct: 563 GMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPG 622

Query: 567 LEHYACMADLFGRVGLLDRAKEIITRMPYRPTSAMWATLIGACCIHRNTDIGEWAAEKLL 626
            EHYAC+ DL GR G L+ A  +I  MP  P   +W   +  C IH   ++GE+AAEK+ 
Sbjct: 623 PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKIT 682

Query: 627 EMKPEHSGYYVLIANMYAAAGSWSKLAKIRTLMRDYGVAKAPGCSWVEVGSEFVSFLVGD 686
           E+   H G Y L++N+YA AG W  + +IR+LMR  GV K PGCSWVE      +F VGD
Sbjct: 683 ELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGD 742

Query: 687 TSNPQALESKHLLDD 690
            ++P A E   +L D
Sbjct: 743 KTHPHAKEIYQVLLD 749

[Close]

BLAST of CmaCh09G013040 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 407.5 bits (1046), Expect = 2.2e-113
Identity = 217/648 (33.49%), Postives = 359/648 (55.40%), Query Frame = 0


Query: 67  LRRSYNDSFDLIVQSISILLVSCTTCSSLPSGKQLHGRIISSGLEEDSILVPKLVTF--- 126
           L  S +  +D I    S+ L+    C +L S + +H ++I  GL   +  + KL+ F   
Sbjct: 20  LPSSSDPPYDSIRNHPSLSLLH--NCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCIL 79

Query: 127 ----------YSSFKLLAEAHTLVENSNLFHPCPWNLLITSYVRNELHESAILAYKQMLS 186
                      S FK + E + L+          WN +   +  +    SA+  Y  M+S
Sbjct: 80  SPHFEGLPYAISVFKTIQEPNLLI----------WNTMFRGHALSSDPVSALKLYVCMIS 139

Query: 187 KGVRPDNFTFPSILKACGETQNLGFGLEVHKCINSWSNQWSLFVQNALISMYGRCGELDT 246
            G+ P+++TFP +LK+C +++    G ++H  +        L+V  +LISMY + G L+ 
Sbjct: 140 LGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLED 199

Query: 247 ARNLFDNMLDRDAVSWNSMISCYASKGMWKEAFELFDIMQSKCLEINIVTWNIIAGGCLR 306
           A  +FD    RD VS+ ++I  YAS+G  + A +LFD +  K    ++V+WN +  G   
Sbjct: 200 AHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DVVSWNAMISGYAE 259

Query: 307 LGKFTRALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHCYHKSSTV 366
            G +  AL+L   M    +  D+  M+  + AC+  G+I LG+++H +   H +  +  +
Sbjct: 260 TGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKI 319

Query: 367 QNALLTMYARCKDIMRAYILFRLNDDKSIITWNSMLSGLSHVDRVEDALRLFREFLLFGV 426
            NAL+ +Y++C ++  A  LF     K +I+WN+++ G +H++  ++AL LF+E L  G 
Sbjct: 320 VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 379

Query: 427 EPNYVTFASILPLCARVADLQHGREFHCYITKR-QDFQDYLLLWNALVDMYARSGKVIEA 486
            PN VT  SILP CA +  +  GR  H YI KR +   +   L  +L+DMYA+ G +  A
Sbjct: 380 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 439

Query: 487 KRVFDSLSKKDEVTYTSLIAGYGMQGEGRKALRLFEEMKSVDIKPDHITMVAVLSACSHS 546
            +VF+S+  K   ++ ++I G+ M G    +  LF  M+ + I+PD IT V +LSACSHS
Sbjct: 440 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 499

Query: 547 GLVKQGEVLFAEMQSVHGLSPHLEHYACMADLFGRVGLLDRAKEIITRMPYRPTSAMWAT 606
           G++  G  +F  M   + ++P LEHY CM DL G  GL   A+E+I  M   P   +W +
Sbjct: 500 GMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCS 559

Query: 607 LIGACCIHRNTDIGEWAAEKLLEMKPEHSGYYVLIANMYAAAGSWSKLAKIRTLMRDYGV 666
           L+ AC +H N ++GE  AE L++++PE+ G YVL++N+YA+AG W+++AK R L+ D G+
Sbjct: 560 LLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 619

Query: 667 AKAPGCSWVEVGSEFVSFLVGDTSNPQALESKHLLDDLNDVMKHGTLV 701
            K PGCS +E+ S    F++GD  +P+  E   +L+++  +++    V
Sbjct: 620 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651

The following BLAST results are available for this feature:

BLAST of CmaCh09G013040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9I6	2.5e-231	58.93	Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana OX...	[more]
Q4V389	3.0e-200	51.02	Pentatricopeptide repeat-containing protein At1g22830 OS=Arabidopsis thaliana OX...	[more]
Q9LFL5	2.8e-118	33.93	Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX...	[more]
Q9LN01	3.0e-112	33.49	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9LNU6	1.9e-106	31.92	Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh09G013040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71490.1	1.8e-232	58.93	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G22830.1	2.1e-201	51.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G22830.2	2.1e-201	51.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G16860.1	2.0e-119	33.93	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	2.2e-113	33.49	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 148..179 e-value: 2.5E-5 score: 22.2 coord: 383..416 e-value: 4.6E-7 score: 27.6 coord: 282..315 e-value: 6.8E-6 score: 23.9 coord: 217..245 e-value: 2.8E-4 score: 18.8 coord: 456..482 e-value: 0.0011 score: 17.0 coord: 485..518 e-value: 3.8E-9 score: 34.1 coord: 247..280 e-value: 2.7E-8 score: 31.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 148..190 e-value: 3.4E-8 score: 33.6 coord: 482..530 e-value: 7.6E-11 score: 42.1 coord: 381..426 e-value: 4.6E-8 score: 33.1 coord: 245..291 e-value: 3.8E-12 score: 46.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 219..244 e-value: 8.8E-4 score: 19.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 483..517 score: 12.441133
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 280..314 score: 10.862706
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 381..415 score: 11.542307
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 214..244 score: 8.911594
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 245..279 score: 12.002681
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 144..178 score: 9.755614
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 536..667 e-value: 1.1E-12 score: 50.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 199..333 e-value: 3.2E-31 score: 110.1 coord: 334..430 e-value: 1.2E-15 score: 59.3 coord: 431..535 e-value: 5.3E-25 score: 89.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 23..198 e-value: 1.4E-13 score: 52.6
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 224..514
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 28..705
None	No IPR available	PANTHER	PTHR47924:SF43	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 28..705

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G013040.1	CmaCh09G013040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding