CmaCh09G012970 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G012970
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionArginine/glutamate-rich 1 protein
LocationCma_Chr09: 8991455 .. 8992578 (+)
RNA-Seq ExpressionCmaCh09G012970
SyntenyCmaCh09G012970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAACGGAAAAGGGTAATGTACGAATGCAAGTGAATGGAATCATACTGATAATCACAGGAGTGTTCTATGTGCCAGAGTTGAAGAACAATCTGCTGAGTATTAGGAAATTGCAAGCAAAGAGGCTTAGCATTTTGTTTCAAAATGGAATATGTAAGGTGTTTCATCCTGAGAGAGGCTTAATCATGGAGACAAAGATGTCTTTGAATCGAATGTTCGTACTGCATGCTATATCTTAGTCTGTAGCAACCGTTAAAACTCAATTGAAACTTATAGGGAGAAGTGGTTCAAGGTCTCTGTCGTACACTCATCGCTCCAATTCCTATCGCCATAGTCGGAGAAGCAGAAGGGACACAAGTCCTTTCCCCTATCATTCCACTACCCGTTCCAGGAGAAGCAACTGTTCAAGTTCCCTCAACCGCCGACGCAGAAGCAGGACTTCCTCATTATCTCCTTTCCCTAAATTGTCCAGTTCCAGTCCTAGTCATGCATCCACTGATCAGAAACATTCCATAGAGAAGCTTAAGAAAGAGGAAGAAGAGAAGAAAAGGCGTGAGGTAGAGTTGAAGAAGTCAGAAGAAGATGCAGCTAGGAGGATGGAAGAACTAATTCAGAGAATGTTGAAAAAAGACTAAACTCTGAAGAGACTAAATTAGAAATACAGAGGCGAATAGAGGAAGGTCGCAAGAAGTTGTTTGATGATGTTGATGTGCAGCTTGAGAAAGTGAAAGAAGTCGCTCTTACTGCTACAAGACAAAAAGAAAAACAAGCACGGAAGGAGAGAGAAGAGCTAGATAAAATGTTGGAAGAGAATAGGAGAATAGTAGAAAAAGCTCAGCAACAATTAGCTCTGGAGCTGCAGTGGAAGGAAGAAGAACAATATTGTGAGCTCGAGTTTATTCAGAGACAAAAAGAGGAGGCAGCTCAGAGAACTAAGGTAGATGATAAGTGTTTGAGTTATGTTTTGCTGGGAGTTAGTGAAGAGTCAAAAGCTTATACACTCTATGATATAGAAGCGTCAGATGAAAATACTACAAAGGAAAATATTTCCTCTGGCTCTTTGGCTGAAGCAAGCTCTTCTAGCTCGAATAAGGCGAGGAATAAGAGACCACCAATCTGA

mRNA sequence

ATGGATGTAACGGAAAAGGGTAATGTACGAATGCAAGTGAATGGAATCATACTGATAATCACAGGAGTGTTCTATGTGCCAGAGTTGAAGAACAATCTGCTGAGTATTAGGAAATTGCAAGCAAAGAGGCTTAGCATTTTGTTTCAAAATGGAATATGGAGAAGTGGTTCAAGGTCTCTGTCGTACACTCATCGCTCCAATTCCTATCGCCATAGTCGGAGAAGCAGAAGGGACACAAGTCCTTTCCCCTATCATTCCACTACCCGTTCCAGGAGAAGCAACTGTTCAAGTTCCCTCAACCGCCGACGCAGAAGCAGGACTTCCTCATTATCTCCTTTCCCTAAATTGTCCAGTTCCAGTCCTAGTCATGCATCCACTGATCAGAAACATTCCATAGAGAAGCTTAAGAAAGAGGAAGAAGAGAAGAAAAGGCGTGAGCTTGAGAAAGTGAAAGAAGTCGCTCTTACTGCTACAAGACAAAAAGAAAAACAAGCACGGAAGGAGAGAGAAGAGCTAGATAAAATGTTGGAAGAGAATAGGAGAATAGTAGAAAAAGCTCAGCAACAATTAGCTCTGGAGCTGCAGTGGAAGGAAGAAGAACAATATTGTGAGCTCGAGTTTATTCAGAGACAAAAAGAGGAGGCAGCTCAGAGAACTAAGGTAGATGATAAGTGTTTGAGTTATGTTTTGCTGGGAGTTAGTGAAGAGTCAAAAGCTTATACACTCTATGATATAGAAGCGTCAGATGAAAATACTACAAAGGAAAATATTTCCTCTGGCTCTTTGGCTGAAGCAAGCTCTTCTAGCTCGAATAAGGCGAGGAATAAGAGACCACCAATCTGA

Coding sequence (CDS)

ATGGATGTAACGGAAAAGGGTAATGTACGAATGCAAGTGAATGGAATCATACTGATAATCACAGGAGTGTTCTATGTGCCAGAGTTGAAGAACAATCTGCTGAGTATTAGGAAATTGCAAGCAAAGAGGCTTAGCATTTTGTTTCAAAATGGAATATGGAGAAGTGGTTCAAGGTCTCTGTCGTACACTCATCGCTCCAATTCCTATCGCCATAGTCGGAGAAGCAGAAGGGACACAAGTCCTTTCCCCTATCATTCCACTACCCGTTCCAGGAGAAGCAACTGTTCAAGTTCCCTCAACCGCCGACGCAGAAGCAGGACTTCCTCATTATCTCCTTTCCCTAAATTGTCCAGTTCCAGTCCTAGTCATGCATCCACTGATCAGAAACATTCCATAGAGAAGCTTAAGAAAGAGGAAGAAGAGAAGAAAAGGCGTGAGCTTGAGAAAGTGAAAGAAGTCGCTCTTACTGCTACAAGACAAAAAGAAAAACAAGCACGGAAGGAGAGAGAAGAGCTAGATAAAATGTTGGAAGAGAATAGGAGAATAGTAGAAAAAGCTCAGCAACAATTAGCTCTGGAGCTGCAGTGGAAGGAAGAAGAACAATATTGTGAGCTCGAGTTTATTCAGAGACAAAAAGAGGAGGCAGCTCAGAGAACTAAGGTAGATGATAAGTGTTTGAGTTATGTTTTGCTGGGAGTTAGTGAAGAGTCAAAAGCTTATACACTCTATGATATAGAAGCGTCAGATGAAAATACTACAAAGGAAAATATTTCCTCTGGCTCTTTGGCTGAAGCAAGCTCTTCTAGCTCGAATAAGGCGAGGAATAAGAGACCACCAATCTGA

Protein sequence

MDVTEKGNVRMQVNGIILIITGVFYVPELKNNLLSIRKLQAKRLSILFQNGIWRSGSRSLSYTHRSNSYRHSRRSRRDTSPFPYHSTTRSRRSNCSSSLNRRRRSRTSSLSPFPKLSSSSPSHASTDQKHSIEKLKKEEEEKKRRELEKVKEVALTATRQKEKQARKEREELDKMLEENRRIVEKAQQQLALELQWKEEEQYCELEFIQRQKEEAAQRTKVDDKCLSYVLLGVSEESKAYTLYDIEASDENTTKENISSGSLAEASSSSSNKARNKRPPI
Homology
[Close]
BLAST of CmaCh09G012970 vs. ExPASy Swiss-Prot
Match: P0CB26 (Uncharacterized protein At1g10890 OS=Arabidopsis thaliana OX=3702 GN=At1g10890 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-10
Identity = 84/242 (34.71%), Postives = 118/242 (48.76%), Query Frame = 0 

Query: 55  SGSRSLSYTHRSNSYRHSRRSRRDTSPFPYHSTTRSRRSNCSSSLNRRRRSRT---SSLS 114
           S SR   ++      RHSRRSRRD SP PY S + SRR + S S  RR RSR+      S
Sbjct: 14  SPSRRRKHSRSPVRQRHSRRSRRDRSPSPYSSHSYSRRKSRSIS-PRRHRSRSVTPKRRS 73

Query: 115 PFP------KLSSSSPSHASTDQKHSI--------EKLKKEEEEKKRR------------ 174
           P P      K  SS+PS A      ++        EKLK+EEEE+KRR            
Sbjct: 74  PTPKRYKRQKSRSSTPSPAKRSPAATLESAKNRNGEKLKREEEERKRRQREAELKLIEEE 133

Query: 175 -------------------------------------------ELEKVKEVALTATRQKE 225
                                                      +LE+ KE +L   ++KE
Sbjct: 134 TVKRVEEAIRKKVEESLQSEKIKMEILTLLEEGRKRLNEEVAAQLEEEKEASLIEAKEKE 193

[Close]
BLAST of CmaCh09G012970 vs. TAIR 10
Match: AT5G13340.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-16
Identity = 85/218 (38.99%), Postives = 120/218 (55.05%), Query Frame = 0 

Query: 54  RSGSRSLSYTHRSN------SYRHSRRSRRDTSPFPYHSTTRSRRSNCSSSLNRRRRSRT 113
           R+ SRS S +HR        ++R SRR+RRD S  PY  T+R ++S  S +  + +R R+
Sbjct: 3   RNDSRSRSPSHRRRYSRSPVTHRSSRRTRRDRSRSPY--TSRHKKSR-SPAPRQHQRDRS 62

Query: 114 SSLSP------------------------FPKLSSSSPSHASTDQKHSIEKLKKEEEEKK 173
           SSLSP                          +L   +        + ++E+  K EE K+
Sbjct: 63  SSLSPSEHRIAIEVKKEQEDKARLQHEAELKRLEEETAQRIEEAVRKNVEERMKTEEVKE 122

Query: 174 RRE-----------------LEKVKEVALTATRQKEKQARKEREELDKMLEENRRIVEKA 225
             E                 L+K KE AL   R+KE+QAR+EREELDKMLEEN R VE++
Sbjct: 123 EIERRTKEAYEKMFLDVEIQLKKEKEAALNEARRKEEQARREREELDKMLEENSRRVEES 182

[Close]
BLAST of CmaCh09G012970 vs. TAIR 10
Match: AT1G10890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes - 3081 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-09
Identity = 84/250 (33.60%), Postives = 118/250 (47.20%), Query Frame = 0 

Query: 55  SGSRSLSYTHRSNSYRHSRRSRRDTSPFPYHSTTRSRRSNCSSSLNRRRRSRT---SSLS 114
           S SR   ++      RHSRRSRRD SP PY S + SRR + S S  RR RSR+      S
Sbjct: 14  SPSRRRKHSRSPVRQRHSRRSRRDRSPSPYSSHSYSRRKSRSIS-PRRHRSRSVTPKRRS 73

Query: 115 PFP------KLSSSSPSHASTDQKHSI--------EKLKKEEEEKKRR------------ 174
           P P      K  SS+PS A      ++        EKLK+EEEE+KRR            
Sbjct: 74  PTPKRYKRQKSRSSTPSPAKRSPAATLESAKNRNGEKLKREEEERKRRQREAELKLIEEE 133

Query: 175 -------------------------------------------ELEKVKEVALTATRQKE 225
                                                      +LE+ KE +L   ++KE
Sbjct: 134 TVKRVEEAIRKKVEESLQSEKIKMEILTLLEEGRKRLNEEVAAQLEEEKEASLIEAKEKE 193

The following BLAST results are available for this feature:
BLAST of CmaCh09G012970 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0CB263.8e-1034.71Uncharacterized protein At1g10890 OS=Arabidopsis thaliana OX=3702 GN=At1g10890 P... [more]
BLAST of CmaCh09G012970 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G13340.18.2e-1638.99unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G10890.14.4e-0933.60unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 129..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..146
NoneNo IPR availablePANTHERPTHR31711:SF2ARGININE/GLUTAMATE-RICH 1 PROTEINcoord: 54..149
coord: 146..224
IPR033371Arginine and glutamate-rich protein 1PFAMPF15346ARGLUcoord: 131..224
e-value: 4.7E-7
score: 29.8
IPR033371Arginine and glutamate-rich protein 1PANTHERPTHR31711ARGININE AND GLUTAMATE-RICH PROTEIN 1coord: 54..149
coord: 146..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012970.1CmaCh09G012970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding