CmaCh09G012940 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G012940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description50S ribosomal protein L16, chloroplastic
LocationCma_Chr09: 8969913 .. 8973227 (-)
RNA-Seq ExpressionCmaCh09G012940
SyntenyCmaCh09G012940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAGAGCAACATCATATTGATTTAATCTACGCTTATGGGATTGAAACAATTCATCATGCTATAAGTGTAGATTGGCGTTTGTATCCATCACGTGCAACAACATACGCTCAAACTTTCTTGATATACTAATGAGAAAATTTTAAAACTTTTTGATACCAATTTCTTCCCCATTTGATCTTAAGTGGTTGCTATAGCACGAATATGATTATTTAATTTTAATTTTTTACATTTGATTTCTTTGATTTCTTTGATTTCTCTTCTTGATGGTGAATTAATGGCAAAATTAATGAAATGATAAAAAATAAAATCAAATTAGATTCAATTTCATAGACCAAATTTATAGTTTGAGAAATTAGAAATGAAGTCTCAAACATTCTATACTTGAAATACTCTGAAACCCACAAAAATATAAGTCTTTCTAAATTTGGTGGTCTTTCCTCACTATATATATATAGGGTCGGATGACATACAGCAACCTACTTATAGGATCTGATGACATTTTTATCCTAGCAAGTGAGTAATATCCTCCATTATCTTAAGCATTTAGACTTAACCAAATGTTCGTTCCAACCAAAAACTTAGGACAATAATTCAAAGACATTTCATATTAGTTTATGTTAAGGATATTTAGTAATAAATTATAGTTTACCATATATATTATATTTGATATTTGCCTTATTATCATAGGTATCTTTCTATTTATTGTTATTTCCATTTATTACTATTTCATATCCTTGTAATTTATTTGATTATAAATAAGACAACTTTCACACGATTTAGGTGTGGTGGATTAATCAAACATTCAAATATTTGCAAGGATATGGAAATAGTAATAAATAGAAATAACAATAAATGGAAAGATACCTATGATAATTAATAAGGCAAATGGAAAGATACCTATGATAATAAGGCAAATATTAGATATCTGCCTTATAATAAAATATCAAATATAATATATATGGTAAACTATAATTTATTACTAAATATTCTTAACACCCCACCGCAAGCTAAGCGTCGGATTTAAACGAACGTGAAGCTTGAATCTGAAAAATTCAAAGAGGTTGAGAAACACTTTTCATGAAGATGCTAAAAACCCGGTTCTTGGCCATCAAAAATTGCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGTGAGAATATTTCTAACCCTAAGAAGTAGAAGGGGAAACCTAGAGCAAGGGACAAAGACAATGTTGAAGCCGGAAGAGTCGCCACATTGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAANAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAGAGCAACATCATATTGATTTAATCTAAGCTTATGGGATTGAAACAATTCATCATGCTATAAGTGTAGATTGGCGTTTGTATCCATCACGTGCAACAACATACGCTCAAACTTTCTTGATATACTAATGAGAAAATTTTAAAACTTTTTGATACCAATTTCTTCCCCATTTGATCTTAAGTGGTTGCTATAGCACGAATATGATTATTTAATTTTAATTTTTTACATTTGATTTCTTTGATTTCTTTGATTTCTCTTCTTGATGGTGAATTAATGGCAAAATTAATGAAATGATAAAAAATAAAATCAAATTAGATTCAATTTCATAGACCAAATTTATAGTTTGAGAAATTAGAAATGAAGTCTCAAACATTCTATACTTGAAATACTCTGAAACCCACAAAAATATAAGTCTTTCTAAATTTGGTGGTCTTTCCTCACTATATATATATAGGGTCGGATGACATACAGCAACCTACTTATAGGATCTGATGACATTTTTATCCTAGCAAGTGAGTAATATCCTCCATTATCTTAAGCATTTAGACTTAACCAAATGTTCGTTCCAACCAAAAACTTAGGACAATAATTCAAAGACATTTCATATTAGTTTATGTTAAGGATATTTAGTAATAAATTATAGTTTACCATATATATTATATTTGATATTTGCCTTATTATCATAGGTATCTTTCTATTTATTGTTATTTCCATTTATTACTATTTCATATCCTTGTAATCTTATTATCATAGGTATCTTTCTATTTATTGTTATTTCCATTTATTACTATTTCATATCCTTGTAATTTATTTGATTATAAATAAGACAACTTTCACACGATTTAGGTGTGGTGGATTAATCAAACATTCAAATATTTGCAAGGATATGGAAATAGTAATAAATAGAAATAACAATAAATGGAAAGATACCTATGATAATTAATAAGGCAAATGGAAAGATACCTATGATAATAAGGCAAATATTAGATATCTGCCTTATAATAAAATATCAAATATAATATATATGGTAAACTATAATTTATTACTAAATATTCTTAACACCCCACCGCAAGCTAAGCGTCGGATTTAAACGAACGTGAAGCTTGAATCTGAAAAATTCAAAGAGGTTGAGAAACACTTTTCATGAAGATGCTAAAAACCCGGTTCTTGGCCATCAAAAATTGCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGTGAGAATATTTCTAACCCTAAGAAGTAGAAGGGGAAACTTAGAGCAAGGGACAAAGACAATGTTGAAGCCGGAAGAGTCGCCACATTGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAATTTTGGCAGGAAGGGCGGCGGCAACTTGGTTGGCGAATAGGCCAGTGCGGCACCCAGATTCCGAAGGTAAATCTCTGCAAAAGGTTGATAGGTTTAGGTTAGGGTTTATGTGAAGGATGAAGGTTGATTGGGAAGAAAATGAGAGAGACTATATTGGCCAAGGGGAAAACCGATTGGGTTGGAAAAGGTGAGGTTGTATGTACAGAGTATGACGAAAGGTGATTTGGAGGTCAATAGGGTGGAGCCGAAGAGTAATCAATCGGCTCCGACTACGGCAGCCATGAAGACTGCCCCTGCGGCGTCAAAACCAGCAGGGGTGGTGGAGAAGAAGATTAGAGGATTCAAAAGCCATTGA

mRNA sequence

ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAANAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGTGAGAATATTTCTAACCCTAAGAAGTAGAAGGGGAAACTTAGAGCAAGGGACAAAGACAATGTTGAAGCCGGAAGAGTCGCCACATTGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAATTTTGGCAGGAAGGGCGGCGGCAACTTGAGTATGACGAAAGGTGATTTGGAGGTCAATAGGGTGGAGCCGAAGAGTAATCAATCGGCTCCGACTACGGCAGCCATGAAGACTGCCCCTGCGGCGTCAAAACCAGCAGGGGTGGTGGAGAAGAAGATTAGAGGATTCAAAAGCCATTGA

Coding sequence (CDS)

ATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAANAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGAGGGATCGCCGCTCAGCGGCGATGTTGCCTTGGCTTCGGCGAGAATATGTCTAACCTATGAAGAGGGATTGTCGCTTAGCGACGATGCTGCCTTGGCTCTGGTGAGAATATTTCTAACCCTAAGAAGTAGAAGGGGAAACTTAGAGCAAGGGACAAAGACAATGTTGAAGCCGGAAGAGTCGCCACATTGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCAGTCGGAAGAGTCGCCTCATCGGGCGAAGAAGCCAATTTTGGCAGGAAGGGCGGCGGCAACTTGAGTATGACGAAAGGTGATTTGGAGGTCAATAGGGTGGAGCCGAAGAGTAATCAATCGGCTCCGACTACGGCAGCCATGAAGACTGCCCCTGCGGCGTCAAAACCAGCAGGGGTGGTGGAGAAGAAGATTAGAGGATTCAAAAGCCATTGA

Protein sequence

MGSGKGSPEYWVAVVKPEGSPLSGDVALASARICLTYEEGLSLSDDAALALGSRKSRLIGRRSQXTRMGSGKGSPEYWVAVVKPEGSPLSGDVALASARICLTYEEGLSLSDDAALALVRIFLTLRSRRGNLEQGTKTMLKPEESPHWAKEPILARRAVGRVASSGEEANFGRKGGGNLSMTKGDLEVNRVEPKSNQSAPTTAAMKTAPAASKPAGVVEKKIRGFKSH
Homology
[Close]
BLAST of CmaCh09G012940 vs. ExPASy Swiss-Prot
Match: Q32RN5 (50S ribosomal protein L16, chloroplastic OS=Zygnema circumcarinatum OX=35869 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-04
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 59  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI 101
           I  R   TRMGSGKGSPEYWVAVVKP     E S +S  +A A+ RI
Sbjct: 74  ITMRPAETRMGSGKGSPEYWVAVVKPGRILYEMSGVSETIARAAMRI 120

[Close]
BLAST of CmaCh09G012940 vs. ExPASy Swiss-Prot
Match: Q85WS6 (50S ribosomal protein L16, chloroplastic OS=Pinus koraiensis OX=88728 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.0e-04
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 59  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI 101
           I  R   TRMGSGKGSPEYWV+V+KP     E   +S  VA A+ARI
Sbjct: 74  ITMRPAETRMGSGKGSPEYWVSVIKPGRILYEMGGVSETVARAAARI 120

[Close]
BLAST of CmaCh09G012940 vs. ExPASy Swiss-Prot
Match: O98456 (50S ribosomal protein L16, chloroplastic OS=Spirogyra maxima OX=3180 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.0e-04
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 59  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI 101
           I  R   TRMGSGKG+PEYWVAVVKP     E S +S  +A A+ RI
Sbjct: 74  ITMRPAETRMGSGKGAPEYWVAVVKPGRILYEMSGISETIARAAMRI 120

[Close]
BLAST of CmaCh09G012940 vs. ExPASy Swiss-Prot
Match: P06383 (50S ribosomal protein L16, chloroplastic OS=Marchantia polymorpha OX=3197 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.6e-04
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 62  RSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI 101
           R   TRMGSGKGSPEYWVAVVKP     E S +S ++A A+ +I
Sbjct: 77  RPAETRMGSGKGSPEYWVAVVKPGKILYEISGVSENIARAAMKI 120

[Close]
BLAST of CmaCh09G012940 vs. ExPASy Swiss-Prot
Match: A2T371 (50S ribosomal protein L16, chloroplastic OS=Angiopteris evecta OX=13825 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.3e-04
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 59  IGRRSQXTRMGSGKGSPEYWVAVVKP-----EGSPLSGDVALASARI 101
           I  R   TRMGSGKGSPEYWV+VVKP     E S +S +VA A+ +I
Sbjct: 74  ITMRPAETRMGSGKGSPEYWVSVVKPGRILYEISGVSENVARAAMKI 120

[Close]
BLAST of CmaCh09G012940 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 45.1 bits (105), Expect = 9.0e-05
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0 

Query: 62 RSQXTRMGSGKGSPEYWVAVVKP 85
          R   TRMGSGKGSPEYWVAVVKP
Sbjct: 77 RPAETRMGSGKGSPEYWVAVVKP 99

The following BLAST results are available for this feature:
BLAST of CmaCh09G012940 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q32RN51.2e-0459.5750S ribosomal protein L16, chloroplastic OS=Zygnema circumcarinatum OX=35869 GN=... [more]
Q85WS62.0e-0457.4550S ribosomal protein L16, chloroplastic OS=Pinus koraiensis OX=88728 GN=rpl16 P... [more]
O984562.0e-0457.4550S ribosomal protein L16, chloroplastic OS=Spirogyra maxima OX=3180 GN=rpl16 PE... [more]
P063832.6e-0459.0950S ribosomal protein L16, chloroplastic OS=Marchantia polymorpha OX=3197 GN=rpl... [more]
A2T3713.3e-0457.4550S ribosomal protein L16, chloroplastic OS=Angiopteris evecta OX=13825 GN=rpl16... [more]
BLAST of CmaCh09G012940 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00790.19.0e-0586.96ribosomal protein L16 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 58..87
e-value: 7.6E-7
score: 31.0
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 63..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..204
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 1..18
coord: 60..84
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 66..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012940.1CmaCh09G012940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0001671 ATPase activator activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0051879 Hsp90 protein binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome