CmaCh09G012360 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G012360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ankyrin repeat-containing protein
Location	Cma_Chr09: 8236380 .. 8237154 (+)
RNA-Seq Expression	CmaCh09G012360
Synteny	CmaCh09G012360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGTGATTTGAATGGGTTTATTCCTCTCCACCATGCAGTGATTAATGGGCAAATTGATATCATACCACTGTTGATCAATGCAAGGCCAAGATCTCCTTGGATCAAGATTAACAATGGTCAAACTGTTCTTCATTTATGCATAAAACACAACCATTTGGAAGCTCTTAAAATGTTGATCTGATTGAAGATCCACAAGATTATGGATTCCTCAACAAGGGCGATGAGAATGAAAATACCATTTTGGATTACACCTTCGAGGGTAATATCATTTGTTCGACATTTGAGGATTCTATTGACACGGCTATGTTAAGGGCATGACTCTAATACCATGTTAAGAATCAAGGATCTCCACAATTGTATGATATTGTCCACTTTTAGCATAAGCTCTTGTGGCTTTTCTTTGAGATTCCCCAAAATGCCTAATGCCAATGGAGATGTATTCCTTAATCATAAACTCACGCTTATTCACTAAAATAGCCAATGTGGGACTCCCTCCCAACAATCCTCAACACTATCATGATATAAACAAATTGACTTCAAATTGTGCACATAGCAGAATTGAAGAACAATGCGATAAAAAGCCATCGATATCACTAACACTTAAAACGTTTATAAGAAGTTTGTGGATGAAGAACCTTGAATACAAAGGTGATGGTTTCAAGAAGTGCAAGGCACAGTGGATATTCAAGGCGCAATCAACCCTCCAGGCGGTGTTTGGCAAGAAGGCATTCCTTTCAACTCCCATAACACTATTCACCATTCGTTTCATT

mRNA sequence

ATGGTTCGTGATTTGAATGGGTTTATTCCTCTCCACCATGCAGTGATTAATGGGCAAATTGATATCATACCACTGTTGATCAATGCAAGGCCAAGATCTCCTTGGATCAAGATTAACAATGGTCAAACTGTTCTTCATTTATGCATAAAACACAACCATTTGGAAGCTCTTAAAATTTTGTGGATGAAGAACCTTGAATACAAAGGTGATGGTTTCAAGAAGTGCAAGGCACAGTGGATATTCAAGGCGCAATCAACCCTCCAGGCGGTGTTTGGCAAGAAGGCATTCCTTTCAACTCCCATAACACTATTCACCATTCGTTTCATT

Coding sequence (CDS)

ATGGTTCGTGATTTGAATGGGTTTATTCCTCTCCACCATGCAGTGATTAATGGGCAAATTGATATCATACCACTGTTGATCAATGCAAGGCCAAGATCTCCTTGGATCAAGATTAACAATGGTCAAACTGTTCTTCATTTATGCATAAAACACAACCATTTGGAAGCTCTTAAAATTTTGTGGATGAAGAACCTTGAATACAAAGGTGATGGTTTCAAGAAGTGCAAGGCACAGTGGATATTCAAGGCGCAATCAACCCTCCAGGCGGTGTTTGGCAAGAAGGCATTCCTTTCAACTCCCATAACACTATTCACCATTCGTTTCATT

Protein sequence

MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKILWMKNLEYKGDGFKKCKAQWIFKAQSTLQAVFGKKAFLSTPITLFTIRFI

Homology

[Close]

BLAST of CmaCh09G012360 vs. ExPASy Swiss-Prot
Match: Q804S5 (E3 ubiquitin-protein ligase mib1 OS=Danio rerio OX=7955 GN=mib1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.2e-05
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 6   NGFIPLHHAVINGQIDIIPLLINARPRSPWI---KINNGQTVLHLCIKHNHLEALKIL 61
           NGF  LHHA + G    + +L++  PR PWI   K ++G T LHL   +NH+E  ++L
Sbjct: 595 NGFNALHHAALRGNPSAMRVLLSKLPR-PWIVDEKKDDGYTALHLAALNNHVEVAELL 651

[Close]

BLAST of CmaCh09G012360 vs. ExPASy Swiss-Prot
Match: Q86YT6 (E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens OX=9606 GN=MIB1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.2e-05
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 6   NGFIPLHHAVINGQIDIIPLLINARPRSPWI---KINNGQTVLHLCIKHNHLEALKIL 61
           NGF  LHHA + G    + +L++  PR PWI   K ++G T LHL   +NH+E  ++L
Sbjct: 595 NGFNALHHAALRGNPSAMRVLLSKLPR-PWIVDEKKDDGYTALHLAALNNHVEVAELL 651

[Close]

BLAST of CmaCh09G012360 vs. ExPASy Swiss-Prot
Match: Q80SY4 (E3 ubiquitin-protein ligase MIB1 OS=Mus musculus OX=10090 GN=Mib1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.2e-05
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 6   NGFIPLHHAVINGQIDIIPLLINARPRSPWI---KINNGQTVLHLCIKHNHLEALKIL 61
           NGF  LHHA + G    + +L++  PR PWI   K ++G T LHL   +NH+E  ++L
Sbjct: 595 NGFNALHHAALRGNPSAMRVLLSKLPR-PWIVDEKKDDGYTALHLAALNNHVEVAELL 651

[Close]

BLAST of CmaCh09G012360 vs. ExPASy Swiss-Prot
Match: Q6GNY1 (E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis OX=8355 GN=mib1 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.2e-05
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 6   NGFIPLHHAVINGQIDIIPLLINARPRSPWI---KINNGQTVLHLCIKHNHLEALKIL 61
           NGF  LHHA + G    + +L++  PR PWI   K ++G T LHL   +NH+E  ++L
Sbjct: 595 NGFNALHHAALRGNPSAMRVLLSKLPR-PWIVDEKKDDGYTALHLAALNNHVEVAELL 651

[Close]

BLAST of CmaCh09G012360 vs. ExPASy Swiss-Prot
Match: Q8GYH5 (Ankyrin repeat-containing protein BDA1 OS=Arabidopsis thaliana OX=3702 GN=BAD1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.6e-04
Identity = 24/73 (32.88%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 2   VRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL- 61
           +R   G  PLH     G +D++   + A P S      NG+T+LH+ I ++  E LK+L 
Sbjct: 100 IRGRGGMTPLHLVAKKGDVDLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVLT 159

Query: 62  -WMKNLEYKGDGF 73
            WM+ +    D F
Sbjct: 160 GWMQKMRDSDDVF 172

[Close]

BLAST of CmaCh09G012360 vs. ExPASy TrEMBL
Match: A0A6J1EHZ5 (ankyrin repeat domain-containing protein 16-like OS=Cucurbita moschata OX=3662 GN=LOC111432739 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MVRDLNG IPLHHAVINGQIDIIPLLINARPRSPWIK++NGQ+VLHLC+KHNHLEALK+L
Sbjct: 80  MVRDLNGLIPLHHAVINGQIDIIPLLINARPRSPWIKLHNGQSVLHLCVKHNHLEALKLL 139

[Close]

BLAST of CmaCh09G012360 vs. ExPASy TrEMBL
Match: A0A6J1EHY8 (uncharacterized protein LOC111432732 OS=Cucurbita moschata OX=3662 GN=LOC111432732 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MVRDLNG IPLHHAVING+IDI+PLLINARP+S W+K++NGQTVLHLC+ HNHLEALK+L
Sbjct: 50  MVRDLNGLIPLHHAVINGRIDIMPLLINARPQSLWMKLHNGQTVLHLCVMHNHLEALKLL 109

[Close]

BLAST of CmaCh09G012360 vs. ExPASy TrEMBL
Match: A0A6J1IG24 (ankyrin repeat-containing protein BDA1-like OS=Cucurbita maxima OX=3661 GN=LOC111472565 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MVRDLNG IPLHHAVING+IDI+  LI ARPRSPW+K++NGQT+LHLCIKHNHLEALK+L
Sbjct: 119 MVRDLNGLIPLHHAVINGRIDIMQRLIIARPRSPWVKLHNGQTILHLCIKHNHLEALKLL 178

[Close]

BLAST of CmaCh09G012360 vs. ExPASy TrEMBL
Match: A0A6J1IEM9 (uncharacterized protein LOC111472564 OS=Cucurbita maxima OX=3661 GN=LOC111472564 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MVRDL+G IPLHHAVING+IDI+PLLINARP+S W+K++NGQTVLHLC+ HNHLEALK+L
Sbjct: 50  MVRDLHGLIPLHHAVINGRIDIMPLLINARPQSLWMKLHNGQTVLHLCVMHNHLEALKLL 109

Query: 61  WMKNLEYKGDGF 73
                +++  GF
Sbjct: 110 ITMIEDHQDYGF 121

[Close]

BLAST of CmaCh09G012360 vs. ExPASy TrEMBL
Match: A0A6J1EC78 (uncharacterized protein LOC111432735 OS=Cucurbita moschata OX=3662 GN=LOC111432735 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MVRDLNG IPLHHAVING+IDII  LI ARPRSPW+K++NGQ+ LHLCIKHNHLE+LK+L
Sbjct: 158 MVRDLNGLIPLHHAVINGRIDIIQRLIIARPRSPWVKLHNGQSALHLCIKHNHLESLKLL 217

[Close]

BLAST of CmaCh09G012360 vs. NCBI nr
Match: XP_022925440.1 (ankyrin repeat domain-containing protein 16-like [Cucurbita moschata])

HSP 1 Score: 122.1 bits (305), Expect = 3.0e-24
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MVRDLNG IPLHHAVINGQIDIIPLLINARPRSPWIK++NGQ+VLHLC+KHNHLEALK+L
Sbjct: 80  MVRDLNGLIPLHHAVINGQIDIIPLLINARPRSPWIKLHNGQSVLHLCVKHNHLEALKLL 139

[Close]

BLAST of CmaCh09G012360 vs. NCBI nr
Match: XP_023535330.1 (protein ACCELERATED CELL DEATH 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 4.3e-23
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MV DLNG +PLHHAVING+IDIIPLLINARPRSPWIKI+NGQ+VLHLCIKHNHLEALK+L
Sbjct: 74  MVLDLNGLLPLHHAVINGRIDIIPLLINARPRSPWIKIHNGQSVLHLCIKHNHLEALKLL 133

[Close]

BLAST of CmaCh09G012360 vs. NCBI nr
Match: XP_022925435.1 (uncharacterized protein LOC111432732 [Cucurbita moschata])

HSP 1 Score: 112.1 bits (279), Expect = 3.1e-21
Identity = 49/60 (81.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MVRDLNG IPLHHAVING+IDI+PLLINARP+S W+K++NGQTVLHLC+ HNHLEALK+L
Sbjct: 50  MVRDLNGLIPLHHAVINGRIDIMPLLINARPQSLWMKLHNGQTVLHLCVMHNHLEALKLL 109

[Close]

BLAST of CmaCh09G012360 vs. NCBI nr
Match: XP_022973934.1 (ankyrin repeat-containing protein BDA1-like [Cucurbita maxima])

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MVRDLNG IPLHHAVING+IDI+  LI ARPRSPW+K++NGQT+LHLCIKHNHLEALK+L
Sbjct: 119 MVRDLNGLIPLHHAVINGRIDIMQRLIIARPRSPWVKLHNGQTILHLCIKHNHLEALKLL 178

[Close]

BLAST of CmaCh09G012360 vs. NCBI nr
Match: XP_022973933.1 (uncharacterized protein LOC111472564 [Cucurbita maxima])

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-21
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           MVRDL+G IPLHHAVING+IDI+PLLINARP+S W+K++NGQTVLHLC+ HNHLEALK+L
Sbjct: 50  MVRDLHGLIPLHHAVINGRIDIMPLLINARPQSLWMKLHNGQTVLHLCVMHNHLEALKLL 109

Query: 61  WMKNLEYKGDGF 73
                +++  GF
Sbjct: 110 ITMIEDHQDYGF 121

[Close]

BLAST of CmaCh09G012360 vs. TAIR 10
Match: AT5G50140.1 (Ankyrin repeat family protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-05
Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 6   NGFIPLHHAVINGQIDIIPLLINARPRS-PWIKINNGQTVLHLCIKHNHLEAL----KIL 65
           +GF PLH AV+NG ++ +   IN  P S   + +   +TV HL  +H  +EA     K  
Sbjct: 108 DGFTPLHCAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHLAARHKKMEAFIFMAKNA 167

Query: 66  WMKNLEYKGDG 72
            ++ L Y+ DG
Sbjct: 168 NLRRLLYELDG 178

[Close]

BLAST of CmaCh09G012360 vs. TAIR 10
Match: AT5G54610.1 (ankyrin )

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-05
Identity = 24/73 (32.88%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 2   VRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL- 61
           +R   G  PLH     G +D++   + A P S      NG+T+LH+ I ++  E LK+L 
Sbjct: 100 IRGRGGMTPLHLVAKKGDVDLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVLT 159

Query: 62  -WMKNLEYKGDGF 73
            WM+ +    D F
Sbjct: 160 GWMQKMRDSDDVF 172

[Close]

BLAST of CmaCh09G012360 vs. TAIR 10
Match: AT2G31820.1 (Ankyrin repeat family protein )

HSP 1 Score: 44.3 bits (103), Expect = 7.4e-05
Identity = 22/60 (36.67%), Postives = 30/60 (50.00%), Query Frame = 0


Query: 1   MVRDLNGFIPLHHAVINGQIDIIPLLINARPRSPWIKINNGQTVLHLCIKHNHLEALKIL 60
           M  DL+    LH A   G ID++ LL+        I  NNG+T LH   +  H+E +K L
Sbjct: 252 MTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKSL 311

The following BLAST results are available for this feature:

BLAST of CmaCh09G012360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q804S5	7.2e-05	41.38	E3 ubiquitin-protein ligase mib1 OS=Danio rerio OX=7955 GN=mib1 PE=1 SV=1	[more]
Q86YT6	7.2e-05	41.38	E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens OX=9606 GN=MIB1 PE=1 SV=1	[more]
Q80SY4	7.2e-05	41.38	E3 ubiquitin-protein ligase MIB1 OS=Mus musculus OX=10090 GN=Mib1 PE=1 SV=1	[more]
Q6GNY1	7.2e-05	41.38	E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis OX=8355 GN=mib1 PE=2 SV=1	[more]
Q8GYH5	3.6e-04	32.88	Ankyrin repeat-containing protein BDA1 OS=Arabidopsis thaliana OX=3702 GN=BAD1 P...	[more]

BLAST of CmaCh09G012360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHZ5	1.4e-24	90.00	ankyrin repeat domain-containing protein 16-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1EHY8	1.5e-21	81.67	uncharacterized protein LOC111432732 OS=Cucurbita moschata OX=3662 GN=LOC1114327...	[more]
A0A6J1IG24	2.0e-21	81.67	ankyrin repeat-containing protein BDA1-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1IEM9	2.6e-21	69.44	uncharacterized protein LOC111472564 OS=Cucurbita maxima OX=3661 GN=LOC111472564...	[more]
A0A6J1EC78	1.3e-20	80.00	uncharacterized protein LOC111432735 OS=Cucurbita moschata OX=3662 GN=LOC1114327...	[more]

BLAST of CmaCh09G012360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925440.1	3.0e-24	90.00	ankyrin repeat domain-containing protein 16-like [Cucurbita moschata]	[more]
XP_023535330.1	4.3e-23	88.33	protein ACCELERATED CELL DEATH 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022925435.1	3.1e-21	81.67	uncharacterized protein LOC111432732 [Cucurbita moschata]	[more]
XP_022973934.1	4.0e-21	81.67	ankyrin repeat-containing protein BDA1-like [Cucurbita maxima]	[more]
XP_022973933.1	5.3e-21	69.44	uncharacterized protein LOC111472564 [Cucurbita maxima]	[more]

BLAST of CmaCh09G012360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50140.1	1.5e-05	35.21	Ankyrin repeat family protein	[more]
AT5G54610.1	2.5e-05	32.88	ankyrin	[more]
AT2G31820.1	7.4e-05	36.67	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 40..69 e-value: 200.0 score: 10.2 coord: 6..38 e-value: 0.07 score: 22.3
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 6..28 score: 8.97673
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 1..91 e-value: 6.4E-12 score: 47.4
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 3..63
IPR020683	Ankyrin repeat-containing domain	PFAM	PF12796	Ank_2	coord: 6..63 e-value: 4.7E-10 score: 39.9
None	No IPR available	PANTHER	PTHR24128	HOMEOBOX PROTEIN WARIAI	coord: 2..60
None	No IPR available	PANTHER	PTHR24128:SF56	ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE	coord: 2..60
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 6..28 score: 8.95888

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012360.1	CmaCh09G012360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding