CmaCh09G012300 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G012300
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRegulator of nonsense transcripts UPF3 isoform X1
LocationCma_Chr09: 8207425 .. 8207819 (-)
RNA-Seq ExpressionCmaCh09G012300
SyntenyCmaCh09G012300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGAATATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATGCAATTGTTTCGTATACGGGTGGTTACAAAACACAGAAGTGTTCTCTGGTTGAAGACCGAATATGCGTTCTATGGATTTCTGGTTTTACAAAATCGAAGTTTCTTTGGTTGAAGACCAAATATGGTTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTTGCCCAAACATACCAAGTGTGACACTGCTTCACCTGGAGGAACGTGCTGGTATATACATACGTGGCTTGCATGA

mRNA sequence

ATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGAATATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATGCAATTGTTTCGTATACGGTTTCTTTGGTTGAAGACCAAATATGGTTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTTGCCCAAACATACCAAGTGTGACACTGCTTCACCTGGAGGAACGTGCTGGTATATACATACGTGGCTTGCATGA

Coding sequence (CDS)

ATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGAATATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCATGAACTGGATTGCAAGATGCAATTGTTTCGTATACGGTTTCTTTGGTTGAAGACCAAATATGGTTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTTGCCCAAACATACCAAGTGTGACACTGCTTCACCTGGAGGAACGTGCTGGTATATACATACGTGGCTTGCATGA

Protein sequence

MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIRFLWLKTKYGLWILVWYDLIFLPKHTKCDTASPGGTCWYIHTWLA
Homology
[Close]
BLAST of CmaCh09G012300 vs. ExPASy TrEMBL
Match: A0A5D3BML0 (Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00280 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 1   MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIR 60
           +ASRQDYGSSNFQG+YLHSEDLMHILRR HHVKWRYALEAVGNSNRF ELDCK     + 
Sbjct: 504 VASRQDYGSSNFQGDYLHSEDLMHILRR-HHVKWRYALEAVGNSNRFRELDCKTCNCFVV 563

Query: 61  FLWLK 66
           + WL+
Sbjct: 564 YRWLQ 567

[Close]
BLAST of CmaCh09G012300 vs. ExPASy TrEMBL
Match: A0A5A7TD91 (Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00280 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 1   MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIR 60
           +ASRQDYGSSNFQG+YLHSEDLMHILRR HHVKWRYALEAVGNSNRF ELDCK     + 
Sbjct: 512 VASRQDYGSSNFQGDYLHSEDLMHILRR-HHVKWRYALEAVGNSNRFRELDCKTCNCFVV 571

Query: 61  FLWLK 66
           + WL+
Sbjct: 572 YRWLQ 575

[Close]
BLAST of CmaCh09G012300 vs. NCBI nr
Match: KAG7025201.1 (hypothetical protein SDJN02_14024, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 66/78 (84.62%), Postives = 68/78 (87.18%), Query Frame = 0 

Query: 1  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIR 60
          MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIR
Sbjct: 1  MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIR 60

Query: 61 -------FLWLKTKYGLW 72
                  LWLKT+Y  +
Sbjct: 61 VVTKHRSVLWLKTEYAFY 78

[Close]
BLAST of CmaCh09G012300 vs. NCBI nr
Match: TYK00427.1 (regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-19
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 1   MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIR 60
           +ASRQDYGSSNFQG+YLHSEDLMHILRR HHVKWRYALEAVGNSNRF ELDCK     + 
Sbjct: 504 VASRQDYGSSNFQGDYLHSEDLMHILRR-HHVKWRYALEAVGNSNRFRELDCKTCNCFVV 563

Query: 61  FLWLK 66
           + WL+
Sbjct: 564 YRWLQ 567

[Close]
BLAST of CmaCh09G012300 vs. NCBI nr
Match: KAA0039239.1 (regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-19
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 1   MASRQDYGSSNFQGEYLHSEDLMHILRRHHHVKWRYALEAVGNSNRFHELDCKMQLFRIR 60
           +ASRQDYGSSNFQG+YLHSEDLMHILRR HHVKWRYALEAVGNSNRF ELDCK     + 
Sbjct: 512 VASRQDYGSSNFQGDYLHSEDLMHILRR-HHVKWRYALEAVGNSNRFRELDCKTCNCFVV 571

Query: 61  FLWLK 66
           + WL+
Sbjct: 572 YRWLQ 575

[Close]
BLAST of CmaCh09G012300 vs. NCBI nr
Match: KAG7037154.1 (Regulator of nonsense transcripts UPF3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 30  HHVKWRYALEAVGNSNRFHELDCKMQLFRIRFLW 64
           HHVKWRYALEAVGNSNRF ELDCK+    + + W
Sbjct: 677 HHVKWRYALEAVGNSNRFRELDCKICNCFVVYRW 710

[Close]
BLAST of CmaCh09G012300 vs. NCBI nr
Match: KAG6607495.1 (hypothetical protein SDJN03_00837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-04
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 30 HHVKWRYALEAVGNSNRFHELDCKMQLFRIRFLW 64
          HHVKWRYALEAVGNSNRF ELDCK+    + + W
Sbjct: 65 HHVKWRYALEAVGNSNRFRELDCKICNCFVVYRW 98

The following BLAST results are available for this feature:
BLAST of CmaCh09G012300 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BML01.7e-1978.46Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX... [more]
A0A5A7TD911.7e-1978.46Regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo var. makuwa OX... [more]
BLAST of CmaCh09G012300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025201.11.1e-2884.62hypothetical protein SDJN02_14024, partial [Cucurbita argyrosperma subsp. argyro... [more]
TYK00427.13.6e-1978.46regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa][more]
KAA0039239.13.6e-1978.46regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo var. makuwa][more]
KAG7037154.14.3e-0470.59Regulator of nonsense transcripts UPF3, partial [Cucurbita argyrosperma subsp. a... [more]
KAG6607495.14.3e-0470.59hypothetical protein SDJN03_00837, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh09G012300 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012300.1CmaCh09G012300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding