CmaCh09G012250 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G012250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Magnesium-chelatase subunit chlH
Location	Cma_Chr09: 8143736 .. 8146377 (-)
RNA-Seq Expression	CmaCh09G012250
Synteny	CmaCh09G012250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCTGCCTCGTATGTAGCATGTGTGCTAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCATGCTCGACTCTGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCACAATCCAAACCTTGCAAACCAAGCCCTTGGTGCATGCTCGACTCGCCTCGTATGTAGCATTTGTGCGAGCTACTCCAAGTTGTGAACAACCCTTTTACATATAATTCTATATTATAATTTGTTAGTGTTTTTATGTGATCATCTACTTACTAATATGTTGCTATGATGCACCACGTAATATCAAGTATGTATGAAATTTTCGTCTCAATGGGAGTTTCATGACCCTATACCATGATTTTATATGCAGAACCTTATGCACATTGTATGTCACAAACATCGATTACTTTTCTAGTATATTACATACAGACGCATACATTACAATATGATACACACTCCTTTTCTTTCAGTTGGTTTTCGACAACGTGAGTGTACATTAGCCTGTCGTCAGGCCTAAGAGGTATGTGTTAAGATCGCACAACATCGCACACACTCGGATGAACACAAAAAACAGAAAAGAGAAAACCTCTTGCATAGCTATTTACTATTTATGACAATTTGTCTGACAATTTATTTATATGTCATTTACCACTTTAGTACGCATAAGGTTGGCCAAGCTATAAATAAGCATGAGACTCCATAACCTATCAGTAGAGTACGTATAGCTTTACTATGTATAACAGTTGACTAAGCTATAAATAAGCATCAAGCTCTATAACCTAACAGTACGTATACGAGCGTGCATATAGAAGTACTATGCATCTAACCATACCCAAAAACGAAAGTAGAGTTTAAGGAATAGTCATAAAAAGAAACCATGTTGCATGTGATTGCATTTCTCGACTCCAACGGTTGAGTCACTTAATATTTTTAATCACCCGCCTTACATCTAACATTTTTCTAAATAAGGCAAGGGCCCTATGTACGGATGATGGCATTAGCCGAGAAAGCCATGGAATCAAGTCCAATTAATTAATTTTCGGCATTTAGGTCATAGTCCTTAAAAATCGAAACATTGGCTGTACTATCATGTGTGTAAAGTTTGGGTAGCATTCCGATCTTAAGAAAAGTCGTCCTGCTTGACCAAATATCCTCTAATGTACCAAGCTTTCAATCACTCTGTTAGATTCAAGCCATGTCTCTCACTAACTTCTCTTTCTTAGTAGACAGGGTAGAGAATGAATGTGCTTGGGAGTCCCTTACAACATTAGGAAAACAATTCAATCCCATGGTAGAAGAGAACAAGAAAAGCTCATACCAACGAGGAACCATCCTTTTTTGGGGCGGAAGGACTCGGCAGAAGACCGGGGTTTGGAGGGAACTACTAAAGGGATATGCATAAAAAGGTCCTTCGATGAAAGTCTCATAGGCTAATTTAGGAAATTATCATGAGTTTATAATCAATGAATACTATCTTCATTGGTACGAGGCTCAAAGCAAAGTCATGAGAGCTTATGCTCAAAGTCGACAATATTATACCATTGTGGAGAGTCATGTTCAACTAATATGATATTAGAGTCATGCCCTAAACTTAGCCATGTCAATAGAATACTCAAATGTTGAACAAAGTATCGTGAGTTTCAAAGGCATAGTCAAAAGTGGCTAAAGCATCGAACAAAAGAGTATACTTTCTTCGAACTGACTTTAATTATTGAAATATATTTGGTTCATAATAATTAAATAATTAAGATAGGAAAGAAAATAAATAAAACTCTGATTCTCATCATAATAACATCATATCCGCCTTTGATGGCAGACGCTTGAAGAAATTGACCGGAACGGACGGCAACTTCCTCCTCAATCTCGGGTGCCGGAGCAAATACAGTCCGATCAGAATCGCCACCACTTGAAACGGCGTGACGTAGATGAAAACCGCCCACATCAACGAGAAGATGATGAACAATGCCGTAGCCCTTGGATCCCTCCACCCGAGAATCGCTTGAGCCCTTTCCCCTTGCGTCGCCAAATCTCCTACCACTGTCTGCACTTTTCCGGCTACGCTCCTTAA

mRNA sequence

ATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCTGCCTCGTATGTAGCATGTGTGCTAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCATGCTCGACTCTGCCTCACGCTTGAAGAAATTGACCGGAACGGACGGCAACTTCCTCCTCAATCTCGGGTGCCGGAGCAAATACAGTCCGATCAGAATCGCCACCACTTGAAACGGCGTGACGTAGATGAAAACCGCCCACATCAACGAGAAGATGATGAACAATGCCGTAGCCCTTGGATCCCTCCACCCGAGAATCGCTTGAGCCCTTTCCCCTTGCGTCGCCAAATCTCCTACCACTGTCTGCACTTTTCCGGCTACGCTCCTTAA

Coding sequence (CDS)

ATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTGTGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCTGCCTCGTATGTAGCATGTGTGCTAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCACGCTCGACTCCGCCTCGTATGTAGCATGTGTGCGAGCTACTCCAAGCGCGCAATCCAAACCTTGCAAACCAAGCCCTTGGTGCATGCTCGACTCTGCCTCACGCTTGAAGAAATTGACCGGAACGGACGGCAACTTCCTCCTCAATCTCGGGTGCCGGAGCAAATACAGTCCGATCAGAATCGCCACCACTTGAAACGGCGTGACGTAGATGAAAACCGCCCACATCAACGAGAAGATGATGAACAATGCCGTAGCCCTTGGATCCCTCCACCCGAGAATCGCTTGAGCCCTTTCCCCTTGCGTCGCCAAATCTCCTACCACTGTCTGCACTTTTCCGGCTACGCTCCTTAA

Protein sequence

MCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLCLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLRLVCSMCASYSKRAIQTLQTKPLVHARLCLTLEEIDRNGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRLSPFPLRRQISYHCLHFSGYAP

Homology

[Close]

BLAST of CmaCh09G012250 vs. ExPASy TrEMBL
Match: A0A3S3MSI8 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01417200 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 223 LEEIDRNGRQ-LPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPEN 282
           LEE++R+ R  L P+  VPEQIQ+ ++ +HLKRR +  NR  Q ++D+  R  W+PP + 
Sbjct: 9   LEEVERHRRHFLVPKPWVPEQIQTSKHTNHLKRRHIKHNRQTQSKEDKNTRRTWVPPVQQ 68

Query: 283 RLSPFPLRRQISYHCLHFSGYAP 305
           R SP PL RQI  H LH   +AP
Sbjct: 69  RQSPLPLHRQIPRHRLHPPHHAP 91

[Close]

BLAST of CmaCh09G012250 vs. ExPASy TrEMBL
Match: A0A443P3B8 (FT-interacting protein 1-like protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01417500 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.2e-09
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 225 EIDRNGRQ-LPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRL 284
           E++R+ R  L P+  VPEQIQ+ ++ HHLKRR +  NR  Q ++D+  R  W+PP + R 
Sbjct: 112 EVERHRRHFLVPKPWVPEQIQTSKHTHHLKRRHIKHNRQTQSKEDKNPRRTWVPPVQQRQ 171

Query: 285 SPFPLRRQISYHCLHFSGYAP 305
           SP PL RQI  H LH   +AP
Sbjct: 172 SPLPLHRQIPRHRLHPPRHAP 192

[Close]

BLAST of CmaCh09G012250 vs. ExPASy TrEMBL
Match: A0A0P0WYN8 (Os06g0614050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0614050 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-08
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 224 EEIDRNGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRL 283
           EE+  + RQ   + RV EQ+++   RHH +RR V+ +   + EDDE+ R P +PPP+ RL
Sbjct: 13  EEVAGHRRQAAAEPRVAEQVEAGDERHHPERRHVEHDGGDEAEDDEEARRPRVPPPQQRL 72

Query: 284 SPFPLRRQISYHCLHFSGYAP 305
            P PLRR ++ H L+  G AP
Sbjct: 73  QPLPLRRHVADHRLYPPGDAP 93

[Close]

BLAST of CmaCh09G012250 vs. ExPASy TrEMBL
Match: A0A0P0WH06 (Os04g0691750 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0691750 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-07
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 229 NGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRLSPFPL 288
           +GR L  ++R+ E++Q   +RHHL+RRDV+ +R  +RE DE      + P E RL   PL
Sbjct: 1   DGRLLAAEARMAEEVQPHHHRHHLERRDVEHHRDDEREQDEDGGGTGVAPAEQRLGALPL 60

Query: 289 RRQISYHCLHFSGYAP 305
           R Q+++H LH  G+AP
Sbjct: 61  RGQVTHHRLHPPGHAP 76

[Close]

BLAST of CmaCh09G012250 vs. ExPASy TrEMBL
Match: A0A5A7QL31 (Magnesium-chelatase subunit chlH OS=Striga asiatica OX=4170 GN=STAS_22120 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-07
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 224 EEIDRNGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRL 283
           E+I  +GR L P+ RVP+ ++  +  H  KRR V  +   Q E +EQ   P +PP + R 
Sbjct: 28  EKITWHGRHLAPEPRVPQHVKPHRKHHDPKRRHVQHHSRTQAEQNEQGSGPRVPPAQQRA 87

Query: 284 SPFPLRRQISYHCLHFSGYAP 305
            PFPLRR ++ H LH S +AP
Sbjct: 88  HPFPLRRHVTSHRLHPSRHAP 108

[Close]

BLAST of CmaCh09G012250 vs. NCBI nr
Match: RWR85312.1 (hypothetical protein CKAN_01417200 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-09
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 223 LEEIDRNGRQ-LPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPEN 282
           LEE++R+ R  L P+  VPEQIQ+ ++ +HLKRR +  NR  Q ++D+  R  W+PP + 
Sbjct: 9   LEEVERHRRHFLVPKPWVPEQIQTSKHTNHLKRRHIKHNRQTQSKEDKNTRRTWVPPVQQ 68

Query: 283 RLSPFPLRRQISYHCLHFSGYAP 305
           R SP PL RQI  H LH   +AP
Sbjct: 69  RQSPLPLHRQIPRHRLHPPHHAP 91

[Close]

BLAST of CmaCh09G012250 vs. NCBI nr
Match: RWR85313.1 (FT-interacting protein 1-like protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-08
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 225 EIDRNGRQ-LPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRL 284
           E++R+ R  L P+  VPEQIQ+ ++ HHLKRR +  NR  Q ++D+  R  W+PP + R 
Sbjct: 112 EVERHRRHFLVPKPWVPEQIQTSKHTHHLKRRHIKHNRQTQSKEDKNPRRTWVPPVQQRQ 171

Query: 285 SPFPLRRQISYHCLHFSGYAP 305
           SP PL RQI  H LH   +AP
Sbjct: 172 SPLPLHRQIPRHRLHPPRHAP 192

[Close]

BLAST of CmaCh09G012250 vs. NCBI nr
Match: KAB8103102.1 (hypothetical protein EE612_035329, partial [Oryza sativa])

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-08
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 224 EEIDRNGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRL 283
           EE+  + RQ   + RV EQ+++   RHH +RR V+ +   + EDDE+ R P +PPP+ RL
Sbjct: 13  EEVAGHRRQAAAEPRVAEQVEAGDERHHPERRHVEHDGGDEAEDDEEARRPRVPPPQQRL 72

Query: 284 SPFPLRRQISYHCLHFSGYAP 305
            P PLRR ++ H L+  G AP
Sbjct: 73  QPLPLRRHVADHRLYPPGDAP 93

[Close]

BLAST of CmaCh09G012250 vs. NCBI nr
Match: BAS98618.1 (Os06g0614050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-08
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 224 EEIDRNGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRL 283
           EE+  + RQ   + RV EQ+++   RHH +RR V+ +   + EDDE+ R P +PPP+ RL
Sbjct: 13  EEVAGHRRQAAAEPRVAEQVEAGDERHHPERRHVEHDGGDEAEDDEEARRPRVPPPQQRL 72

Query: 284 SPFPLRRQISYHCLHFSGYAP 305
            P PLRR ++ H L+  G AP
Sbjct: 73  QPLPLRRHVADHRLYPPGDAP 93

[Close]

BLAST of CmaCh09G012250 vs. NCBI nr
Match: KAB8097662.1 (hypothetical protein EE612_026448, partial [Oryza sativa] >BAS91789.1 Os04g0691750, partial [Oryza sativa Japonica Group])

HSP 1 Score: 66.6 bits (161), Expect = 4.2e-07
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 229 NGRQLPPQSRVPEQIQSDQNRHHLKRRDVDENRPHQREDDEQCRSPWIPPPENRLSPFPL 288
           +GR L  ++R+ E++Q   +RHHL+RRDV+ +R  +RE DE      + P E RL   PL
Sbjct: 1   DGRLLAAEARMAEEVQPHHHRHHLERRDVEHHRDDEREQDEDGGGTGVAPAEQRLGALPL 60

Query: 289 RRQISYHCLHFSGYAP 305
           R Q+++H LH  G+AP
Sbjct: 61  RGQVTHHRLHPPGHAP 76

The following BLAST results are available for this feature:

BLAST of CmaCh09G012250 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G012250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3S3MSI8	2.8e-09	46.99	Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_...	[more]
A0A443P3B8	8.2e-09	46.91	FT-interacting protein 1-like protein OS=Cinnamomum micranthum f. kanehirae OX=3...	[more]
A0A0P0WYN8	2.4e-08	43.21	Os06g0614050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
A0A0P0WH06	2.0e-07	43.42	Os04g0691750 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os04...	[more]
A0A5A7QL31	7.6e-07	41.98	Magnesium-chelatase subunit chlH OS=Striga asiatica OX=4170 GN=STAS_22120 PE=4 S...	[more]

BLAST of CmaCh09G012250 vs. NCBI nr


Match Name	E-value	Identity	Description
RWR85312.1	5.8e-09	46.99	hypothetical protein CKAN_01417200 [Cinnamomum micranthum f. kanehirae]	[more]
RWR85313.1	1.7e-08	46.91	FT-interacting protein 1-like protein [Cinnamomum micranthum f. kanehirae]	[more]
KAB8103102.1	4.9e-08	43.21	hypothetical protein EE612_035329, partial [Oryza sativa]	[more]
BAS98618.1	4.9e-08	43.21	Os06g0614050, partial [Oryza sativa Japonica Group]	[more]
KAB8097662.1	4.2e-07	43.42	hypothetical protein EE612_026448, partial [Oryza sativa] >BAS91789.1 Os04g06917...	[more]

BLAST of CmaCh09G012250 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..273
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012250.1	CmaCh09G012250.1	mRNA