CmaCh09G012010 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G012010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-H2 finger protein ATL7
Location	Cma_Chr09: 7827621 .. 7830072 (+)
RNA-Seq Expression	CmaCh09G012010
Synteny	CmaCh09G012010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTATGATCATTTGGATCAATCTCCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTGTGTTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAACAATAACATATCTGCTGTATGAACTTCTCTTTGTGTGTGTTGTTTGGTTTGTTTTTGATTATTAATGATTTTGAACTTTCTTTGTTGTTGTGGTTGAGCAGTGTGATGTTGGGTTGACGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTACAATGAAACATTCTTTGTTACTGATACGCTGTGAGTGGATTTTTTTTCTCTTATGTTTGTTTGATGTATTTTGGTGAATGTTTGTACTCTAAGGGCATTTCTATAGGTACCATTAGCGGATTTTTGTTCGTGTTTTAGGGATGTTTTGAAGAGCTATCTTTTGTTTCGGGTATCTTGATATTTCCATAGGAAATAGTTTTGGGACGTGATATTTGAAGAAAAAGAGGTGATGTGTGAGATCTCTCATGGTGTGGAAACCTCTCTTTAGTAGACGCGTTTTAAGAACCTTGAGGGGAAGTCCGAAAGGGAAAGTCCAAAGAGGATAATATCTGTTAGCGGTGGGCTTGAGTTGTTACAAATGGTATCAGAGCCAGATACTGGGCGATGTATTAACGAGGAGGTTGAGCCTTGAAGGGGGTGGACACGAGGTAGTGTGTCAGTAAGGACGTTGGGCCCCTAAGGGGGTGGATTGGGGAGTCCCACATTGATTAGAGAAGGGAACGAGTGTTAGTGAGGACGCTGGGCCCTTGATCCCACATCGGTTGGGGAGGAGAATGAAACATCTTTTATAAGGGCGTGGAAATGTTTCCCTAGTAGACTCATTTTAAAATTTTTTAGGGAAATCCCAAAAAAGACAATATCGGTTAGTGGTGGACTTGGGTTGCAAATGGTATTAGAGTCAAACATCAGGCGATGTGCCAACAAGAAGGCTGAGCCCCGAAAGGGGGTGGACATGAGGCGGTGTGCCAGCAAGGACGTTGGGTCCCAAAGGGGGGTGGATTGGGGAGTCTCACATTGATTAGAGAAGGGAACGAGTGCTAACAAGGACGCTAAGCCCCAAATCCCACATCGGTTGGGGAGGAGAGCGAAACATCCTTTATAACGGTGTGGAAACTTCTCCCTAGCAGACACGTTTTAAAAACCTTGAGGGGAAACTTGAAAGGGAAAGCTCAAAAAAGACAATATCTACTACCGGTGGGCTTGGGTTGTTACATTATGACACTGTATACAAGAACTTCAAACCGAAACTCTAACGGGGTTGTTTATAGCACTAGACAAGTAAATTGAGTTACGGTCAATAGTTTTTGACAAACCCCAAAAATTGTTGCATACTCTGCCAATTTTCGGTTCATTTTATGTTGCGTTTCATGGGAGACTTTTTGTTCCTTTGTTAGGGTAGCTCTCATAAGCTACTATTTCCTCGATATGAATTTCGAAGAAAAAGAGCGGGTGACAATGTGTGAACTTCAAACCGAATTAGGCTCTGGATACTAAACCATACACGTCAAAATCATCAAATTTGACTATTCCTCACGATAGTGTCGAAAAATATCGCTATTTTTTTTCTGTTAATTCTCTCTATTCGGCCTCGTCTTGAGAGAGCAATCCTTATGTGTTTGTTGTTTGTGGCAGATGTTCAGTCTGTTTAGGGGAATACCAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGCACCTGCCCACTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCCCGACCACCGCACATACAGATTGAGATGGGACTCGAATCGACAAATGAGCAACGTCGCTAAGAAGCACCTCCTCAACATAGTAATCAAGCTTGTCAACATACAACACTTCCCGTGTGAGGTCATAATTCGAGTTTTCAATGGGAAAGAATCATTCAAAAAGGGATGCAACTTTGGATAATAATTCATCAAGAGAAGACGATCCGAGGGATCGGGAACTATCAATGCCACCGACCCGCATTTTAGCACAGGGATATAGTTTATGTAACATTCCAAGACTGGTCTATGAGGACCATGGCCTTTCAAAGTACATTGTTCTATCTCCCAACAGATCGCCCGTTCAGACTCACTGCTAATAGATATTGGCCTCTTTGAGTTTTCTCTTTCGGGCTTTCTTTCAAGGTTTTTAAAATGTGTATGCTAGAAAGAGGTTTTCACACCCTTATAAAAAATGCTTTATTCTTTTCCCTAATTGATGTGGGATCTCGTAGCACCAAAATTTTGTTCATGAGCATAATCTATGAGAAACAAGAAGCTGTCTTTACTTGTTATCTTTTG

mRNA sequence

ATGGGTTATGATCATTTGGATCAATCTCCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTGTGTTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAACAATAACATATCTGCTTGTGATGTTGGGTTGACGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTACAATGAAACATTCTTTGTTACTGATACGCTATGTTCAGTCTGTTTAGGGGAATACCAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGCACCTGCCCACTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCCCGACCACCGCACATACAGATTGAGATGGGACTCGAATCGACAAATGAGCAACGTCGCTAAGAAGCACCTCCTCAACATAGTAATCAAGCTTGTCAACATACAACACTTCCCGTGTGAGGTCATAATTCGAGTTTTCAATGGGAAAGAATCATTCAAAAAGGGATGCAACTTTGGATAATAATTCATCAAGAGAAGACGATCCGAGGGATCGGGAACTATCAATGCCACCGACCCGCATTTTAGCACAGGGATATAGTTTATGTAACATTCCAAGACTGGTCTATGAGGACCATGGCCTTTCAAAGTACATTGTTCTATCTCCCAACAGATCGCCCGTTCAGACTCACTGCTAATAGATATTGGCCTCTTTGAGTTTTCTCTTTCGGGCTTTCTTTCAAGGTTTTTAAAATGTGTATGCTAGAAAGAGGTTTTCACACCCTTATAAAAAATGCTTTATTCTTTTCCCTAATTGATGTGGGATCTCGTAGCACCAAAATTTTGTTCATGAGCATAATCTATGAGAAACAAGAAGCTGTCTTTACTTGTTATCTTTTG

Coding sequence (CDS)

ATGGGTTATGATCATTTGGATCAATCTCCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTGTGTTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAACAATAACATATCTGCTTGTGATGTTGGGTTGACGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTACAATGAAACATTCTTTGTTACTGATACGCTATGTTCAGTCTGTTTAGGGGAATACCAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGCACCTGCCCACTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCCCGACCACCGCACATACAGATTGAGATGGGACTCGAATCGACAAATGAGCAACGTCGCTAA

Protein sequence

MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR

Homology

[Close]

BLAST of CmaCh09G012010 vs. ExPASy Swiss-Prot
Match: Q570X5 (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.9e-44
Identity = 87/158 (55.06%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 3   YDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNI 62
           Y     SPELKLYQ F+F VPI FTFI+LFLFYL+YLRR  +D +S+ MRT+  +  N++
Sbjct: 11  YSAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTT-FIPGNSL 70

Query: 63  SACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCID 122
           S  ++GL+KE REMLPI+V+ E+F V D+ CSVCLG+YQ  DKLQ+IP C H FH+DCID
Sbjct: 71  STIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCID 130

Query: 123 HWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQ 161
            WL++H+TCPLCRL+++   SR         L S +E+
Sbjct: 131 LWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEE 167

[Close]

BLAST of CmaCh09G012010 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42
Identity = 84/158 (53.16%), Postives = 118/158 (74.68%), Query Frame = 0


Query: 8   QSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRR---RADWNSIRMRTSDAV-NNNNIS 67
           +S +LKLYQ F+F VPI FTFI+LF+ Y++YLRR      DW+S+ MR    V  NNN+S
Sbjct: 22  ESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPTNNNLS 81

Query: 68  ACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 127
             ++GL+K+ REMLP+++Y E+F V D+ CSVCLG+YQ E+KLQ++PSCGH FH++CID 
Sbjct: 82  TAELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDL 141

Query: 128 WLSNHSTCPLCRLSVL-SPSSRPPH--IQIEMGLESTN 159
           WL++H+TCPLCRLS++  PS    H   +I   +E++N
Sbjct: 142 WLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSN 179

[Close]

BLAST of CmaCh09G012010 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-34
Identity = 76/158 (48.10%), Postives = 110/158 (69.62%), Query Frame = 0


Query: 9   SPELKLYQF-FVFCVPILFTFILLFLFYLLYLRRRRA----DWNSIRMRTSDAVNNNNIS 68
           S E ++ +F F+ CVPI    ++L +  +LY+ RR +    DW+S+         NNN+S
Sbjct: 14  STESQILKFTFIVCVPIC---VILIVLLVLYIMRRNSNTNVDWSSL---GGFVPTNNNLS 73

Query: 69  ACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 128
             ++GL+K+ REMLPI++Y E+F V DT CSVCLG+YQ E+KLQ++PSCGH FH++CID 
Sbjct: 74  TAELGLSKDIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDL 133

Query: 129 WLSNHSTCPLCRLSVL-SPSSRPPH--IQIEMGLESTN 159
           WL++H+TCPLCRLS++  PS    H  I+I   +E+TN
Sbjct: 134 WLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTN 165

[Close]

BLAST of CmaCh09G012010 vs. ExPASy Swiss-Prot
Match: Q84TF5 (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RHA4A PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 60/142 (42.25%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 8   QSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNS-----IRMRTSDAVNNNNI 67
           Q+ +LKLYQ F+F +PILF+ IL  LFYL YL+RR +  +S     + + +S   +++  
Sbjct: 15  QAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMILPVSSSHQTSSHLP 74

Query: 68  SACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCID 127
           S C + +  E ++ L ++++NE     D+LC VCLGE++ +++L ++P C H+FHLDCI 
Sbjct: 75  SVCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIH 134

Query: 128 HWLSNHSTCPLCRLSVLSPSSR 145
            WL +H+TCPLCR SV   S++
Sbjct: 135 LWLYSHNTCPLCRSSVSISSTK 156

[Close]

BLAST of CmaCh09G012010 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-17
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 66  DVGLTKEFREMLPIIVYNETFFVTDTL--CSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 125
           D G+ + F + LP+  Y     + +    C+VCL E++TEDKL+ +P C H FH+DCID 
Sbjct: 105 DSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDT 164

Query: 126 WLSNHSTCPLCRLSVLS--PSSRPPHIQIEMGLESTNE 160
           WL +HSTCPLCR S+LS   S + P     + LES ++
Sbjct: 165 WLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASD 202

[Close]

BLAST of CmaCh09G012010 vs. ExPASy TrEMBL
Match: A0A6J1IAE2 (RING-H2 finger protein ATL58-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472698 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.2e-89
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60
           MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN
Sbjct: 1   MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60

Query: 61  NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120
           NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC
Sbjct: 61  NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120

Query: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 163
           IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR
Sbjct: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 162

[Close]

BLAST of CmaCh09G012010 vs. ExPASy TrEMBL
Match: A0A6J1EWA2 (RING-H2 finger protein ATL58-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436691 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.2e-85
Identity = 157/162 (96.91%), Postives = 159/162 (98.15%), Query Frame = 0


Query: 1   MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60
           MGYDHLDQS ELKLYQFFVF VPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN
Sbjct: 1   MGYDHLDQSSELKLYQFFVFSVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60

Query: 61  NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120
           NISACDVGL KEFREMLPIIV+NETFFVTDTLCSVCLGEYQT+DKLQKIPSCGHVFHLDC
Sbjct: 61  NISACDVGLKKEFREMLPIIVFNETFFVTDTLCSVCLGEYQTKDKLQKIPSCGHVFHLDC 120

Query: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 163
           IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR
Sbjct: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 162

[Close]

BLAST of CmaCh09G012010 vs. ExPASy TrEMBL
Match: A0A5A7T7X7 (RING-H2 finger protein ATL7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001430 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.5e-73
Identity = 138/175 (78.86%), Postives = 149/175 (85.14%), Query Frame = 0


Query: 1   MGYDHLDQS----------------PELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRA 60
           M YDHLD+S                PELKLYQF VFC+PILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MTYDHLDRSKSYSVASGPGSVSKPAPELKLYQFVVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTED 120
           DW SIRMRTS A  NNNIS  +VGL KEFREMLPIIVYNETFFVTDTLCSVCLGEY+TED
Sbjct: 61  DWTSIRMRTSAAATNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNE 160
           KLQKIP+CGHVFH+DCIDHWL+NH+TCPLCRLSVLSPSS+PPHIQI+MG ES+NE
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMGHESSNE 175

[Close]

BLAST of CmaCh09G012010 vs. ExPASy TrEMBL
Match: A0A1S3C9U6 (RING-H2 finger protein ATL7 OS=Cucumis melo OX=3656 GN=LOC103498626 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.7e-72
Identity = 136/175 (77.71%), Postives = 149/175 (85.14%), Query Frame = 0


Query: 1   MGYDHLDQS----------------PELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRA 60
           M YDHLD+S                PELKLYQF VFC+PILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MTYDHLDRSKSYSVASGPGSVSKPAPELKLYQFVVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTED 120
           DW SIRMRTS A  NNNIS  +VGL KEFREMLPIIVYNETFFVTDTLCSVCLGEY+TED
Sbjct: 61  DWTSIRMRTSAAATNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNE 160
           KLQKIP+CGHVFH+DCIDHWL+NH+TCPLCRLS+LSPSS+PPHIQI+MG ES++E
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSILSPSSQPPHIQIDMGHESSDE 175

[Close]

BLAST of CmaCh09G012010 vs. ExPASy TrEMBL
Match: A0A0A0KVZ9 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G647300 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 8.1e-72
Identity = 135/169 (79.88%), Postives = 145/169 (85.80%), Query Frame = 0


Query: 1   MGYDHLDQS----------------PELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRA 60
           M YDHLD S                PELK+YQFFVFC+PILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MAYDHLDPSKSYTVASGPGSASKPAPELKVYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTED 120
           DW SIRMRTS A NNNNIS  +VGL KEFREMLPIIVYNETFFVTDTLCSVCLGEY+TED
Sbjct: 61  DWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMG 154
           KLQKIP+CGHVFH+DCIDHWL+NH+TCPLCRLSVLSPSS+PPHIQI+MG
Sbjct: 121 KLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSVLSPSSQPPHIQIDMG 169

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: XP_022974081.1 (RING-H2 finger protein ATL58-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 337.0 bits (863), Expect = 8.8e-89
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60
           MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN
Sbjct: 1   MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60

Query: 61  NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120
           NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC
Sbjct: 61  NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120

Query: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 163
           IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR
Sbjct: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 162

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: KAG6592288.1 (RING-H2 finger protein ATL7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327.8 bits (839), Expect = 5.3e-86
Identity = 159/162 (98.15%), Postives = 159/162 (98.15%), Query Frame = 0


Query: 1   MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60
           MGYDHLDQS ELKLYQFFVF VPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN
Sbjct: 1   MGYDHLDQSSELKLYQFFVFSVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60

Query: 61  NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120
           NISACDVGL KEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC
Sbjct: 61  NISACDVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120

Query: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 163
           IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR
Sbjct: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 162

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: XP_023535013.1 (RING-H2 finger protein ATL58-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.1 bits (832), Expect = 3.5e-85
Identity = 159/162 (98.15%), Postives = 159/162 (98.15%), Query Frame = 0


Query: 1   MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60
           MGYDHLDQS ELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAV NN
Sbjct: 1   MGYDHLDQSSELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAV-NN 60

Query: 61  NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120
           NISACDVGL KEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC
Sbjct: 61  NISACDVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120

Query: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 163
           IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR
Sbjct: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 161

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: XP_022930190.1 (RING-H2 finger protein ATL58-like isoform X1 [Cucurbita moschata] >KAG7025127.1 RING-H2 finger protein ATL7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324.7 bits (831), Expect = 4.5e-85
Identity = 157/162 (96.91%), Postives = 159/162 (98.15%), Query Frame = 0


Query: 1   MGYDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60
           MGYDHLDQS ELKLYQFFVF VPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN
Sbjct: 1   MGYDHLDQSSELKLYQFFVFSVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNN 60

Query: 61  NISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDC 120
           NISACDVGL KEFREMLPIIV+NETFFVTDTLCSVCLGEYQT+DKLQKIPSCGHVFHLDC
Sbjct: 61  NISACDVGLKKEFREMLPIIVFNETFFVTDTLCSVCLGEYQTKDKLQKIPSCGHVFHLDC 120

Query: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 163
           IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR
Sbjct: 121 IDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRR 162

[Close]

BLAST of CmaCh09G012010 vs. NCBI nr
Match: XP_038889575.1 (RING-H2 finger protein ATL7-like [Benincasa hispida])

HSP 1 Score: 292.4 bits (747), Expect = 2.5e-75
Identity = 142/175 (81.14%), Postives = 152/175 (86.86%), Query Frame = 0


Query: 1   MGYDHLDQS----------------PELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRA 60
           M YDHLD S                PELKLYQFFVFC+PILFTFILLFLFYLLYLRRRRA
Sbjct: 1   MAYDHLDPSKSYSVASGPGSVSRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRA 60

Query: 61  DWNSIRMRTSDAVNNNNISACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTED 120
           DW SIRMRTS AVNNNNIS  +VGL KEFREMLPIIVYNETFFVTDTLCSVCLGEY+TED
Sbjct: 61  DWTSIRMRTSAAVNNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTED 120

Query: 121 KLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNE 160
           KLQKIPSCGHVFH+DCIDHWLSNH+TCPLCRLSVLSPSS+PPH+QI++GLES+NE
Sbjct: 121 KLQKIPSCGHVFHMDCIDHWLSNHNTCPLCRLSVLSPSSQPPHVQIDVGLESSNE 175

[Close]

BLAST of CmaCh09G012010 vs. TAIR 10
Match: AT1G33480.1 (RING/U-box superfamily protein )

HSP 1 Score: 177.9 bits (450), Expect = 6.3e-45
Identity = 87/158 (55.06%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 3   YDHLDQSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNI 62
           Y     SPELKLYQ F+F VPI FTFI+LFLFYL+YLRR  +D +S+ MRT+  +  N++
Sbjct: 11  YSAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTT-FIPGNSL 70

Query: 63  SACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCID 122
           S  ++GL+KE REMLPI+V+ E+F V D+ CSVCLG+YQ  DKLQ+IP C H FH+DCID
Sbjct: 71  STIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCID 130

Query: 123 HWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQ 161
            WL++H+TCPLCRL+++   SR         L S +E+
Sbjct: 131 LWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEE 167

[Close]

BLAST of CmaCh09G012010 vs. TAIR 10
Match: AT4G10150.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.1 bits (440), Expect = 9.2e-44
Identity = 84/158 (53.16%), Postives = 118/158 (74.68%), Query Frame = 0


Query: 8   QSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRR---RADWNSIRMRTSDAV-NNNNIS 67
           +S +LKLYQ F+F VPI FTFI+LF+ Y++YLRR      DW+S+ MR    V  NNN+S
Sbjct: 22  ESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPTNNNLS 81

Query: 68  ACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 127
             ++GL+K+ REMLP+++Y E+F V D+ CSVCLG+YQ E+KLQ++PSCGH FH++CID 
Sbjct: 82  TAELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDL 141

Query: 128 WLSNHSTCPLCRLSVL-SPSSRPPH--IQIEMGLESTN 159
           WL++H+TCPLCRLS++  PS    H   +I   +E++N
Sbjct: 142 WLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSN 179

[Close]

BLAST of CmaCh09G012010 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-35
Identity = 76/158 (48.10%), Postives = 110/158 (69.62%), Query Frame = 0


Query: 9   SPELKLYQF-FVFCVPILFTFILLFLFYLLYLRRRRA----DWNSIRMRTSDAVNNNNIS 68
           S E ++ +F F+ CVPI    ++L +  +LY+ RR +    DW+S+         NNN+S
Sbjct: 14  STESQILKFTFIVCVPIC---VILIVLLVLYIMRRNSNTNVDWSSL---GGFVPTNNNLS 73

Query: 69  ACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 128
             ++GL+K+ REMLPI++Y E+F V DT CSVCLG+YQ E+KLQ++PSCGH FH++CID 
Sbjct: 74  TAELGLSKDIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDL 133

Query: 129 WLSNHSTCPLCRLSVL-SPSSRPPH--IQIEMGLESTN 159
           WL++H+TCPLCRLS++  PS    H  I+I   +E+TN
Sbjct: 134 WLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTN 165

[Close]

BLAST of CmaCh09G012010 vs. TAIR 10
Match: AT4G24015.1 (RING/U-box superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 8.3e-29
Identity = 60/142 (42.25%), Postives = 95/142 (66.90%), Query Frame = 0


Query: 8   QSPELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNS-----IRMRTSDAVNNNNI 67
           Q+ +LKLYQ F+F +PILF+ IL  LFYL YL+RR +  +S     + + +S   +++  
Sbjct: 15  QAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMILPVSSSHQTSSHLP 74

Query: 68  SACDVGLTKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCID 127
           S C + +  E ++ L ++++NE     D+LC VCLGE++ +++L ++P C H+FHLDCI 
Sbjct: 75  SVCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIH 134

Query: 128 HWLSNHSTCPLCRLSVLSPSSR 145
            WL +H+TCPLCR SV   S++
Sbjct: 135 LWLYSHNTCPLCRSSVSISSTK 156

[Close]

BLAST of CmaCh09G012010 vs. TAIR 10
Match: AT4G30400.1 (RING/U-box superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-18
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 66  DVGLTKEFREMLPIIVYNETFFVTDTL--CSVCLGEYQTEDKLQKIPSCGHVFHLDCIDH 125
           D G+ + F + LP+  Y     + +    C+VCL E++TEDKL+ +P C H FH+DCID 
Sbjct: 105 DSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDT 164

Query: 126 WLSNHSTCPLCRLSVLS--PSSRPPHIQIEMGLESTNE 160
           WL +HSTCPLCR S+LS   S + P     + LES ++
Sbjct: 165 WLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASD 202

The following BLAST results are available for this feature:

BLAST of CmaCh09G012010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q570X5	8.9e-44	55.06	RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1	[more]
Q9SN28	1.3e-42	53.16	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1	[more]
Q9SN27	1.7e-34	48.10	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 ...	[more]
Q84TF5	1.2e-27	42.25	Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q940Q4	4.2e-17	43.88	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]

BLAST of CmaCh09G012010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAE2	4.2e-89	100.00	RING-H2 finger protein ATL58-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1EWA2	2.2e-85	96.91	RING-H2 finger protein ATL58-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A5A7T7X7	9.5e-73	78.86	RING-H2 finger protein ATL7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3C9U6	4.7e-72	77.71	RING-H2 finger protein ATL7 OS=Cucumis melo OX=3656 GN=LOC103498626 PE=4 SV=1	[more]
A0A0A0KVZ9	8.1e-72	79.88	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G647300 P...	[more]

BLAST of CmaCh09G012010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974081.1	8.8e-89	100.00	RING-H2 finger protein ATL58-like isoform X1 [Cucurbita maxima]	[more]
KAG6592288.1	5.3e-86	98.15	RING-H2 finger protein ATL7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023535013.1	3.5e-85	98.15	RING-H2 finger protein ATL58-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930190.1	4.5e-85	96.91	RING-H2 finger protein ATL58-like isoform X1 [Cucurbita moschata] >KAG7025127.1 ...	[more]
XP_038889575.1	2.5e-75	81.14	RING-H2 finger protein ATL7-like [Benincasa hispida]	[more]

BLAST of CmaCh09G012010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33480.1	6.3e-45	55.06	RING/U-box superfamily protein	[more]
AT4G10150.1	9.2e-44	53.16	RING/U-box superfamily protein	[more]
AT4G10160.1	1.2e-35	48.10	RING/U-box superfamily protein	[more]
AT4G24015.1	8.3e-29	42.25	RING/U-box superfamily protein	[more]
AT4G30400.1	3.0e-18	43.88	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 93..134 e-value: 2.9E-6 score: 36.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 93..135 e-value: 2.7E-14 score: 53.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 93..135 score: 13.035139
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 53..140 e-value: 4.1E-19 score: 70.1
None	No IPR available	PANTHER	PTHR22765:SF275	RING-H2 FINGER PROTEIN ATL7-LIKE	coord: 11..142
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 11..142
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 77..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G012010.1	CmaCh09G012010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity