CmaCh09G009520 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G009520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionExpression of the gene is downregulated in the presence of paraquat, putative
LocationCma_Chr09: 4785984 .. 4786298 (-)
RNA-Seq ExpressionCmaCh09G009520
SyntenyCmaCh09G009520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAACTGTTTGCGGCGGGATGGCGCGGCGGCGCAGTGGGCCGGTGAGGAGTGGGACTTACTCGCGGCGGAGGACGACGGCCGGGAAGGGCTTCTCGGCGAAAACGAGAAGAAAAAGAGTTCAACGACGGCGACAGAGGTGAAGATTAAGATCACGAAGAGACAGCTGGAGGAGCTTTTGGGGAAAGTGGATATTAAGGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAAGTTGATTGA

mRNA sequence

ATGGGCAACTGTTTGCGGCGGGATGGCGCGGCGGCGCAGTGGGCCGGTGAGGAGTGGGACTTACTCGCGGCGGAGGACGACGGCCGGGAAGGGCTTCTCGGCGAAAACGAGAAGAAAAAGAGTTCAACGACGGCGACAGAGGTGAAGATTAAGATCACGAAGAGACAGCTGGAGGAGCTTTTGGGGAAAGTGGATATTAAGGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAAGTTGATTGA

Coding sequence (CDS)

ATGGGCAACTGTTTGCGGCGGGATGGCGCGGCGGCGCAGTGGGCCGGTGAGGAGTGGGACTTACTCGCGGCGGAGGACGACGGCCGGGAAGGGCTTCTCGGCGAAAACGAGAAGAAAAAGAGTTCAACGACGGCGACAGAGGTGAAGATTAAGATCACGAAGAGACAGCTGGAGGAGCTTTTGGGGAAAGTGGATATTAAGGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAAGTTGATTGA

Protein sequence

MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD
Homology
BLAST of CmaCh09G009520 vs. ExPASy TrEMBL
Match: A0A6J1IHJ3 (uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60
           MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

BLAST of CmaCh09G009520 vs. ExPASy TrEMBL
Match: A0A6J1FD17 (uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC111442898 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60
           MGNCLRRDGAAAQWAGEEWD LAAEDDGREGLLGE EKKKSST ATEVKIKITKRQLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

BLAST of CmaCh09G009520 vs. ExPASy TrEMBL
Match: A0A6J1CG88 (uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010526 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.9e-30
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60
           MGNCLRRDGAA +WAGEEW  LA E  G             +  ATEVKIKITK+QLEEL
Sbjct: 1   MGNCLRRDGAAERWAGEEWGFLAEEKQG--------SAAAPTAAATEVKIKITKKQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGK D+K +SVQQVLAQLI VGDQFHESRHR WRPVLQSIPE+D
Sbjct: 61  LGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 96

BLAST of CmaCh09G009520 vs. ExPASy TrEMBL
Match: A0A5D2L6Y6 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G434100v1 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.6e-23
Identity = 65/120 (54.17%), Postives = 83/120 (69.17%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAA---EDDG-------REGLLGENEKK------KSSTT 60
           MGNCLR   ++ QWAG++W    A   EDDG        +G++G++ +K       SS T
Sbjct: 1   MGNCLRHQ-SSTQWAGDDWGTTVADYGEDDGFSDIKTKEKGIVGDHHQKDGFITTSSSPT 60

Query: 61  ATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
             EVK+KITK+QLEELLG+VD+KE+SVQQVLAQLI V +QF E+  R WRP LQSIPEV+
Sbjct: 61  VHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPEVN 119

BLAST of CmaCh09G009520 vs. ExPASy TrEMBL
Match: A0A5D2QUV4 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G022400v1 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAA---EDDG-------REGLLGENEKK------KSSTT 60
           MGNCLR   ++ QWAG++W   AA   +DDG        +G++G++ +K       S+ T
Sbjct: 1   MGNCLRHQ-SSTQWAGDDWGTTAADYGDDDGFSDIKTKEKGIVGDHHQKDGFITTSSTPT 60

Query: 61  ATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
             EVK+KITK+QLEELLG+VD+KE+SVQQVLAQLI V +QF E+  R WRP LQSIPEV+
Sbjct: 61  VHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPEVN 119

BLAST of CmaCh09G009520 vs. NCBI nr
Match: XP_022975730.1 (uncharacterized protein LOC111475920 [Cucurbita maxima])

HSP 1 Score: 208.4 bits (529), Expect = 3.0e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60
           MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

BLAST of CmaCh09G009520 vs. NCBI nr
Match: XP_022936225.1 (uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothetical protein SDJN03_14388, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024918.1 hypothetical protein SDJN02_13738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60
           MGNCLRRDGAAAQWAGEEWD LAAEDDGREGLLGE EKKKSST ATEVKIKITKRQLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

BLAST of CmaCh09G009520 vs. NCBI nr
Match: XP_023536165.1 (uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.0 bits (502), Expect = 4.1e-47
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60
           MGNC+RRDGAAAQWAGEEWD LAAEDDGREGLLGE EKKKSST ATEVKIKITKRQLEEL
Sbjct: 1   MGNCIRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGKVDIKEMSVQQVLAQLIGV DQFHESRHRHWRPVLQSIPEVD
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVDDQFHESRHRHWRPVLQSIPEVD 104

BLAST of CmaCh09G009520 vs. NCBI nr
Match: XP_038896531.1 (uncharacterized protein LOC120084782 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 5.3e-39
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAAE-DDGREGLLGENEKKK-----SSTTATEVKIKITK 60
           MGNCLRRD A AQWAGE+WD LAAE  DG+EGLL + EKKK     +STTA  VKIKITK
Sbjct: 1   MGNCLRRDDAVAQWAGEDWDFLAAEGHDGQEGLLRDGEKKKCSAAVASTTAATVKIKITK 60

Query: 61  RQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           RQLEELLGKVDIKE+SVQQVLAQLIGVGDQFHESRHRHWRPVLQ IPEVD
Sbjct: 61  RQLEELLGKVDIKEISVQQVLAQLIGVGDQFHESRHRHWRPVLQCIPEVD 110

BLAST of CmaCh09G009520 vs. NCBI nr
Match: XP_022139678.1 (uncharacterized protein LOC111010526 [Momordica charantia])

HSP 1 Score: 141.0 bits (354), Expect = 5.9e-30
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60
           MGNCLRRDGAA +WAGEEW  LA E  G             +  ATEVKIKITK+QLEEL
Sbjct: 1   MGNCLRRDGAAERWAGEEWGFLAEEKQG--------SAAAPTAAATEVKIKITKKQLEEL 60

Query: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 105
           LGK D+K +SVQQVLAQLI VGDQFHESRHR WRPVLQSIPE+D
Sbjct: 61  LGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 96

BLAST of CmaCh09G009520 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 0

Query: 1   MGNCLRRDGAAAQWAGEEWDLLAAED------------DGREGLLGENEKKKSSTTATEV 60
           MGNCLR + +   WAGE+WD    ED            DG+  ++      KSS  + E+
Sbjct: 1   MGNCLRHE-SEMHWAGEDWDEFITEDEEDHHYSSKTTRDGKPVIV--TRDSKSSVPSHEI 60

Query: 61  KIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHE--SRHRHWRPVLQSIPEVD 105
           KI++TK+QL +LL KV++ +++ QQ       + ++ +E  ++ R WRPVLQSIPEV+
Sbjct: 61  KIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQSIPEVN 115

BLAST of CmaCh09G009520 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-10
Identity = 42/129 (32.56%), Postives = 71/129 (55.04%), Query Frame = 0

Query: 1   MGNCL-RRDGAAAQWAGEE------------WDLLAAEDDGREGLLGE-----NEKKKSS 60
           MGNC+   +     W+G++              ++  ++D  E LLGE     +    SS
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTSTSSSSS 60

Query: 61  TTATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLI-GVGDQFHES------RHRHWRP 105
           +   E+KI+ITK++LE+L+  + +K ++ +++L++LI   GDQ   S       H+ W+P
Sbjct: 61  SERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IHJ31.5e-50100.00uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920... [more]
A0A6J1FD171.8e-4897.12uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC1114428... [more]
A0A6J1CG882.9e-3070.19uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A5D2L6Y67.6e-2354.17Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G434100v1 P... [more]
A0A5D2QUV41.3e-2253.33Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G022400v1 P... [more]
Match NameE-valueIdentityDescription
XP_022975730.13.0e-50100.00uncharacterized protein LOC111475920 [Cucurbita maxima][more]
XP_022936225.13.7e-4897.12uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothet... [more]
XP_023536165.14.1e-4795.19uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo][more]
XP_038896531.15.3e-3981.82uncharacterized protein LOC120084782 [Benincasa hispida][more]
XP_022139678.15.9e-3070.19uncharacterized protein LOC111010526 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT3G20340.11.1e-1338.14Expression of the gene is downregulated in the presence of paraquat, an inducer ... [more]
AT4G21920.14.3e-1032.56unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33647:SF5OS01G0793900 PROTEINcoord: 1..103
NoneNo IPR availablePANTHERPTHR33647OS01G0793900 PROTEINcoord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G009520.1CmaCh09G009520.1mRNA