CmaCh09G009240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G009240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Basic helix-loop-helix transcription factor
Location	Cma_Chr09: 4612273 .. 4614722 (+)
RNA-Seq Expression	CmaCh09G009240
Synteny	CmaCh09G009240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCACGTTTTTTTGTAATTGTTCGAGAAATGGTATCCCCTGAAAATCCAAATTGGTTGTTTGATTATAGTTTCATCGACGACATCCCTGTACCGGATGCGAATTTTCCGGTCACGAGTTCAAGTTTCTCCTGGGCTGTTCAGCCCTTAAACGGCTCCCCTGATGCCGGGTAATCTTCAGATCCCTGTCAATTACTCGTTCGAGCTTGTTTTTATTTTATTATTGAACTTAAATTGGGTTTGCTGCATCGAATGTACTTTTATTTTGGGGGAAGACAATACTTTCTGGATTTTCGTGGGCATGCCAAAGTTGTTAAGAATCACAGATCTTATTATATTGTCCACTTTGAGCCTAAGTTCTAATGGCTTTGCTTTTGGGAACCAAAGGACTCGTACCAATGGAGATGTATTTCTTTACTTGAGCATTCCCTAAATTAGCCAACGAAAGTTGTTAAGAATCACAGATCTTATTATATATTGTCCCCTTTGAGCCTAAGCTCTAATGGCTTTGCTTTTGGGAACCAAAGGCCTCGTACCAATGGAGATGTATTCCTTTACTTATAAACCCATGATCATTCCTTAAATTAGCTAACGCGGGACTCACTCCTAACCATACTCAACAGAAGTATGGGCGGTGGACTGGCCCTTTTATTGCCGTCCAGAATAATTTTTGAGATTATTTCTTTTAAGCAAGATTTCAAACTTGTTTTGAACATTTTTATATGAGTTAGTAATTGGTTCATACGTCCTACTTATGACATGAAGATTGAGAGATTGTGGGGGAATGGTGTATAGATACTATACTTCTAATTCTGTTTGGTGAAGTATCACATCGTTGACTGAATTGATTTAGTATCCACGGGGTTGATAGGTGTAAACAATAAGGGACGTTGGGGGTATGACTATACCAAGAACTATTTTTTGTTGTGTTCTTGGAAACTGTAAGACTGTAAGGATGATGAGATAAGGATGTCATACCATTGTGCATCTTGGCTTCTATGTTTGTATATGCTCACTTCTTTCTCCTTTGATGTTATTCTAATGTGGAAATTGATGGATAATTGGCAGATTTGGATGGCCGTCTAGAATCTGGCTCAAAGAAGAGGTATGAAACCTTCATTATTACTTTCTAATCTGGTCTGTTTGGTAGAATCAGCCTTTTGCCTTGTAATAATATGCTTGGTTTGAATGTCTTTCCATAACAACAATCTGGGACTTGAGATCATTAGAAATATCTTAGGACTATTGCTGTTGTCACAAGTAGAGCTGCATGGTTTGAATGAATCATCAGACTTCAGGATTTCTTGGTGTTTTAATTGACTTTCAGGAAGCATTTTGATTAGTCATCACTTGTAATTTTGAGTTCCTTTAATTTAAATTCCCCAGAAATTTGTATCATGGTTATGTTTTAATGGGTTCAAAATTAGACGTACAGTGTCATGGTCGGTAGGGTGCTATTGCTTGTTTTATGACTGATGACAGCTCAAAACAAGCTGATCTGACAATTAGGGATTGGGGGTAATATAAGGGTGCTGTTGCTTGTTTTATGACTGATGGAATTTAAGCCTCTAATATTTTTGTTGAGATGCAAGGCATTTACCTCGTGCAGTGTCATGGTTGTATGCCTTGCGTGTGGGGGTCACAACCTACTTTCTCTAAGTGAGGTTGTGATACACAGCACACAGGATACCTGTTTCCTTATTGGTTGTGAGTTAACTGGAGAGCGGAGAGAATTTGGTTTGGTTGGGAGTTAGCGATATAGCTTTGTTTGGTTGGGAGTTAGCGATATAGCTTTGATCCTTCATTCAATCAGATCCTTCGATCAATCCACCGATTGTTTTTGGTTTCTATTGTAATTATTATATTGCATACAGTTGAAAGTTTCAAGTTGGTATTGCTTATGATTTAGTAAAAGGCTGTGGATCCATTTGTTTACTTTCATGTATGTTCTCCGAGGTGAAATTTGGCTAAACATGTTTAAATATATTGAGCTGATTTAAGCAAGCCTAGATAGAGCAATAATAACAGAACAGAAATTAGAAGTGGAAAGAGAGATCTAATATGGCATCAAATGAAGTACACGTTTTCTGCTGCAGGGTGAGATCTGAATCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTTCGGAGGGATAGGCTCAATGACAGGTACTTCCCCTGACCCGAACCAATGGGCAATCATGGCACATTTGTCCGTTCTTCTATATTTTTTACCATTATATGTTGTCCCAACAAAAGCATAATTCTTATGATGAATCTCATAACAGGTTTTTGGAACTAGGTTCAATTTTGGATCCTGGAAGACTACCCAAAACTGACAAGGCAGCGATTTTAGTCGATGCTGTTCGAATGGTGAATCAGTTGCGTAGTGAGGCTTGGAAACTGAAGGAATCAAATTCAAGTCTCCAGGAAAAGATTTAA

mRNA sequence

ATGATCCCACGTTTTTTTGTAATTGTTCGAGAAATGGTATCCCCTGAAAATCCAAATTGGTTGTTTGATTATAGTTTCATCGACGACATCCCTGTACCGGATGCGAATTTTCCGGTCACGAGTTCAAGTTTCTCCTGGGCTGTTCAGCCCTTAAACGGCTCCCCTGATGCCGGTAATTGGTTCATACGTCCTACTTATGACATGAAGATTGAGAGATTGTGGGGGAATGATTTGGATGGCCGTCTAGAATCTGGCTCAAAGAAGAGGGTGAGATCTGAATCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTTCGGAGGGATAGGCTCAATGACAGGTTTTTGGAACTAGGTTCAATTTTGGATCCTGGAAGACTACCCAAAACTGACAAGGCAGCGATTTTAGTCGATGCTGTTCGAATGGTGAATCAGTTGCGTAGTGAGGCTTGGAAACTGAAGGAATCAAATTCAAGTCTCCAGGAAAAGATTTAA

Coding sequence (CDS)

ATGATCCCACGTTTTTTTGTAATTGTTCGAGAAATGGTATCCCCTGAAAATCCAAATTGGTTGTTTGATTATAGTTTCATCGACGACATCCCTGTACCGGATGCGAATTTTCCGGTCACGAGTTCAAGTTTCTCCTGGGCTGTTCAGCCCTTAAACGGCTCCCCTGATGCCGGTAATTGGTTCATACGTCCTACTTATGACATGAAGATTGAGAGATTGTGGGGGAATGATTTGGATGGCCGTCTAGAATCTGGCTCAAAGAAGAGGGTGAGATCTGAATCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTTCGGAGGGATAGGCTCAATGACAGGTTTTTGGAACTAGGTTCAATTTTGGATCCTGGAAGACTACCCAAAACTGACAAGGCAGCGATTTTAGTCGATGCTGTTCGAATGGTGAATCAGTTGCGTAGTGAGGCTTGGAAACTGAAGGAATCAAATTCAAGTCTCCAGGAAAAGATTTAA

Protein sequence

MIPRFFVIVREMVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIERLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKTDKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI

Homology

[Close]

BLAST of CmaCh09G009240 vs. ExPASy Swiss-Prot
Match: Q9FH37 (Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.2e-33
Identity = 85/154 (55.19%), Postives = 99/154 (64.29%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPEN NW+ D      I     +F +    FSW VQ   G        +       ++
Sbjct: 1   MVSPENANWICDL-----IDADYGSFTIQGPGFSWPVQQPIG--------VSSNSSAGVD 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
              GN  +   E GSKKR R ES SA+SSKACREK RRDRLND+F+ELG+IL+PG  PKT
Sbjct: 61  GSAGNS-EASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMV QLR EA KLK+SNSSLQ+KI
Sbjct: 121 DKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKI 140

[Close]

BLAST of CmaCh09G009240 vs. ExPASy Swiss-Prot
Match: Q9C682 (Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-30
Identity = 78/154 (50.65%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPEN NWL DY      P+ +  F   + +F W +   +GS          T  ++++
Sbjct: 1   MVSPENTNWLSDY------PLIEGAFSDQNPTFPWQI---DGS---------ATVSVEVD 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                D D   E  S+KR+++ESC+ S+SKACREK RRDRLND+F EL S+L+PGR PKT
Sbjct: 61  GFL-CDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DK AI+ DA+RMVNQ R EA KLK+ NSSLQEKI
Sbjct: 121 DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKI 135

[Close]

BLAST of CmaCh09G009240 vs. ExPASy Swiss-Prot
Match: Q9LTC7 (Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-20
Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 83  ESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKTDKAAILVDAVR 142
           E  S KR R+ SCS   +KACREK RR++LND+F++L S+L+PGR PKTDK+AIL DA+R
Sbjct: 149 EECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIR 208

Query: 143 MVNQLRSEAWKLKESNSSLQEKI 166
           +VNQLR EA +L+E+N  L E+I
Sbjct: 209 VVNQLRGEAHELQETNQKLLEEI 231

[Close]

BLAST of CmaCh09G009240 vs. ExPASy Swiss-Prot
Match: Q8L467 (Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-19
Identity = 48/81 (59.26%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 86  SKKRVRSESCS-ASSSKACREKFRRDRLNDRFLELGSILDPGRLPKTDKAAILVDAVRMV 145
           S+KR R+ SCS    +KACRE+ RR++LN+RF++L S+L+PGR PKTDK AIL DA+R++
Sbjct: 119 SRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRIL 178

Query: 146 NQLRSEAWKLKESNSSLQEKI 166
           NQLR EA KL+E+N  L E+I
Sbjct: 179 NQLRDEALKLEETNQKLLEEI 199

[Close]

BLAST of CmaCh09G009240 vs. ExPASy Swiss-Prot
Match: Q9LT23 (Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.6e-10
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 99  SSKACREKFRRDRLNDRFLELGSILDPGRLPKTDKAAILVDAVRMVNQLRSEAWKLKESN 158
           S KA REK RR++LN+ F+ELG++LDP R PK DKA IL D V+++ +L SE  KLK   
Sbjct: 61  SQKAGREKLRREKLNEHFVELGNVLDPER-PKNDKATILTDTVQLLKELTSEVNKLKSEY 120

Query: 159 SSLQEK 165
           ++L ++
Sbjct: 121 TALTDE 125

[Close]

BLAST of CmaCh09G009240 vs. ExPASy TrEMBL
Match: A0A6J1F961 (transcription factor ILR3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443456 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.6e-59
Identity = 128/154 (83.12%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVS ENPNWLFDYS IDD PVP+ANFPVTSSSFSWAVQP NG PDAG         ++I+
Sbjct: 1   MVSAENPNWLFDYSLIDDTPVPNANFPVTSSSFSWAVQPFNGFPDAG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                DLDGRLESGSKKRVRSESCSASSSKACREKF RDRLND+FLELGSILDPGRLPKT
Sbjct: 61  GSLA-DLDGRLESGSKKRVRSESCSASSSKACREKFWRDRLNDKFLELGSILDPGRLPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLRSEA KLKESNSSLQEKI
Sbjct: 121 DKAAILVDAVRMVNQLRSEARKLKESNSSLQEKI 144

[Close]

BLAST of CmaCh09G009240 vs. ExPASy TrEMBL
Match: A0A0A0L7P5 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G416140 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.3e-57
Identity = 122/154 (79.22%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPENPNWLFDY  I+DIPVPD NFPVTSSSFSW +QP NGS D+G         ++I+
Sbjct: 1   MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWPIQPFNGSHDSG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                DLDGRLESGSKKRVRS+SCSASSSKACREK RRDRLND+FLELGSILDPGR PKT
Sbjct: 61  GSLA-DLDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLRSE  KLKESNSSLQEKI
Sbjct: 121 DKAAILVDAVRMVNQLRSETQKLKESNSSLQEKI 144

[Close]

BLAST of CmaCh09G009240 vs. ExPASy TrEMBL
Match: A0A6J1CDI6 (transcription factor ILR3-like OS=Momordica charantia OX=3673 GN=LOC111010560 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.4e-57
Identity = 124/154 (80.52%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPENPNWLFDY  ID+IPVPDANFPVTSSSFSWAVQPLNG+PD G         ++I+
Sbjct: 1   MVSPENPNWLFDYGLIDNIPVPDANFPVTSSSFSWAVQPLNGTPDVG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                + DGRLESGSKKRVRS+S SASSSKACREK RRDRLNDRFLELGSILDPGR PKT
Sbjct: 61  GSLA-EPDGRLESGSKKRVRSDSFSASSSKACREKLRRDRLNDRFLELGSILDPGRPPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLR EA KLKESNSSLQEKI
Sbjct: 121 DKAAILVDAVRMVNQLRGEAQKLKESNSSLQEKI 144

[Close]

BLAST of CmaCh09G009240 vs. ExPASy TrEMBL
Match: A0A5A7TUD2 (Transcription factor ILR3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00580 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 120/154 (77.92%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPENPNWLFDY  I+DIPVPD NFPVTSSSF+WA+QP NG+ D G         ++I+
Sbjct: 1   MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFTWAIQPFNGAHDTG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                D+DGRLESGSKKRVRS+SCSASSSKACREK RRDRLND+FLELGSILDPGR PKT
Sbjct: 61  GSLA-DVDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLRSE  KLKESNSSLQEKI
Sbjct: 121 DKAAILVDAVRMVNQLRSETHKLKESNSSLQEKI 144

[Close]

BLAST of CmaCh09G009240 vs. ExPASy TrEMBL
Match: A0A0A0L7N8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G415100 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 121/154 (78.57%), Postives = 129/154 (83.77%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPENPNWLFDY  I+DIPVPD NFPVTSSSFSW +QP NGS D+G         ++I+
Sbjct: 1   MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWPIQPFNGSHDSG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                DLDG LESGSKKRVRS+SCSASSSKACREK RRDRLND+FLELGSILDPGR PKT
Sbjct: 61  GSLA-DLDGHLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLRSE  KLKESNSSLQEKI
Sbjct: 121 DKAAILVDAVRMVNQLRSETQKLKESNSSLQEKI 144

[Close]

BLAST of CmaCh09G009240 vs. NCBI nr
Match: XP_023535130.1 (transcription factor ILR3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.0 bits (624), Expect = 4.6e-61
Identity = 130/154 (84.42%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPENPNWLFDYS IDDIPVPDANFPV SSSFSWAVQP NGSPDAG         ++I+
Sbjct: 1   MVSPENPNWLFDYSLIDDIPVPDANFPVMSSSFSWAVQPFNGSPDAG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                DLDGRLESGSKKRVRSESCSASSSKACREK RRDRLND+FLELGSILDPGRLPKT
Sbjct: 61  GSLA-DLDGRLESGSKKRVRSESCSASSSKACREKLRRDRLNDKFLELGSILDPGRLPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLRSEA KLKESNSSLQEK+
Sbjct: 121 DKAAILVDAVRMVNQLRSEARKLKESNSSLQEKV 144

[Close]

BLAST of CmaCh09G009240 vs. NCBI nr
Match: XP_022937036.1 (transcription factor ILR3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 237.7 bits (605), Expect = 7.4e-59
Identity = 128/154 (83.12%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVS ENPNWLFDYS IDD PVP+ANFPVTSSSFSWAVQP NG PDAG         ++I+
Sbjct: 1   MVSAENPNWLFDYSLIDDTPVPNANFPVTSSSFSWAVQPFNGFPDAG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                DLDGRLESGSKKRVRSESCSASSSKACREKF RDRLND+FLELGSILDPGRLPKT
Sbjct: 61  GSLA-DLDGRLESGSKKRVRSESCSASSSKACREKFWRDRLNDKFLELGSILDPGRLPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLRSEA KLKESNSSLQEKI
Sbjct: 121 DKAAILVDAVRMVNQLRSEARKLKESNSSLQEKI 144

[Close]

BLAST of CmaCh09G009240 vs. NCBI nr
Match: XP_038900262.1 (transcription factor ILR3-like [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 8.2e-58
Identity = 123/154 (79.87%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPENPNWLFDY  IDDIPVPDANFPVTSSSFSW++QP NG+PD G         ++I+
Sbjct: 1   MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWSIQPFNGTPDPG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                DLDGRLESGSKKRVRS+SCSASSSKACREK RRDRLND+FLEL SILDPGR PKT
Sbjct: 61  GSLA-DLDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELNSILDPGRPPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLRSE  KLKESNSSLQEKI
Sbjct: 121 DKAAILVDAVRMVNQLRSETQKLKESNSSLQEKI 144

[Close]

BLAST of CmaCh09G009240 vs. NCBI nr
Match: XP_022139711.1 (transcription factor ILR3-like [Momordica charantia])

HSP 1 Score: 230.7 bits (587), Expect = 9.0e-57
Identity = 124/154 (80.52%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPENPNWLFDY  ID+IPVPDANFPVTSSSFSWAVQPLNG+PD G         ++I+
Sbjct: 1   MVSPENPNWLFDYGLIDNIPVPDANFPVTSSSFSWAVQPLNGTPDVG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                + DGRLESGSKKRVRS+S SASSSKACREK RRDRLNDRFLELGSILDPGR PKT
Sbjct: 61  GSLA-EPDGRLESGSKKRVRSDSFSASSSKACREKLRRDRLNDRFLELGSILDPGRPPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLR EA KLKESNSSLQEKI
Sbjct: 121 DKAAILVDAVRMVNQLRGEAQKLKESNSSLQEKI 144

[Close]

BLAST of CmaCh09G009240 vs. NCBI nr
Match: XP_008454558.1 (PREDICTED: transcription factor ILR3 isoform X1 [Cucumis melo] >KAA0046458.1 transcription factor ILR3 isoform X1 [Cucumis melo var. makuwa] >TYJ97754.1 transcription factor ILR3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-56
Identity = 120/154 (77.92%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPENPNWLFDY  I+DIPVPD NFPVTSSSF+WA+QP NG+ D G         ++I+
Sbjct: 1   MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFTWAIQPFNGAHDTG---------VEID 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                D+DGRLESGSKKRVRS+SCSASSSKACREK RRDRLND+FLELGSILDPGR PKT
Sbjct: 61  GSLA-DVDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMVNQLRSE  KLKESNSSLQEKI
Sbjct: 121 DKAAILVDAVRMVNQLRSETHKLKESNSSLQEKI 144

[Close]

BLAST of CmaCh09G009240 vs. TAIR 10
Match: AT5G54680.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 141.7 bits (356), Expect = 5.1e-34
Identity = 85/154 (55.19%), Postives = 99/154 (64.29%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPEN NW+ D      I     +F +    FSW VQ   G        +       ++
Sbjct: 1   MVSPENANWICDL-----IDADYGSFTIQGPGFSWPVQQPIG--------VSSNSSAGVD 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
              GN  +   E GSKKR R ES SA+SSKACREK RRDRLND+F+ELG+IL+PG  PKT
Sbjct: 61  GSAGNS-EASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DKAAILVDAVRMV QLR EA KLK+SNSSLQ+KI
Sbjct: 121 DKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKI 140

[Close]

BLAST of CmaCh09G009240 vs. TAIR 10
Match: AT1G51070.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 78/154 (50.65%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPEN NWL DY      P+ +  F   + +F W +   +GS          T  ++++
Sbjct: 1   MVSPENTNWLSDY------PLIEGAFSDQNPTFPWQI---DGS---------ATVSVEVD 60

Query: 72  RLWGNDLDGRLESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKT 131
                D D   E  S+KR+++ESC+ S+SKACREK RRDRLND+F EL S+L+PGR PKT
Sbjct: 61  GFL-CDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKT 120

Query: 132 DKAAILVDAVRMVNQLRSEAWKLKESNSSLQEKI 166
           DK AI+ DA+RMVNQ R EA KLK+ NSSLQEKI
Sbjct: 121 DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKI 135

[Close]

BLAST of CmaCh09G009240 vs. TAIR 10
Match: AT1G51070.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 7.2e-28
Identity = 81/208 (38.94%), Postives = 105/208 (50.48%), Query Frame = 0


Query: 12  MVSPENPNWLFDYSFIDDIPVPDANFPVTSSSFSWAVQPLNGSPDAGNWFIRPTYDMKIE 71
           MVSPEN NWL DY      P+ +  F   + +F W +   + +   G++  R  Y   I 
Sbjct: 1   MVSPENTNWLSDY------PLIEGAFSDQNPTFPWQIDG-SATVRIGSYIWRSCYGCVIT 60

Query: 72  RL-----------------------------------------------WGNDLDGRL-- 131
           +L                                                  ++DG L  
Sbjct: 61  QLVFRCSCCDRDIGLLHKSILCFFFCLRFAYVPLFPKEVDESRSLPIAKGSVEVDGFLCD 120

Query: 132 -----ESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKTDKAAIL 166
                E  S+KR+++ESC+ S+SKACREK RRDRLND+F EL S+L+PGR PKTDK AI+
Sbjct: 121 ADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAII 180

[Close]

BLAST of CmaCh09G009240 vs. TAIR 10
Match: AT3G23210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-21
Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 83  ESGSKKRVRSESCSASSSKACREKFRRDRLNDRFLELGSILDPGRLPKTDKAAILVDAVR 142
           E  S KR R+ SCS   +KACREK RR++LND+F++L S+L+PGR PKTDK+AIL DA+R
Sbjct: 149 EECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIR 208

Query: 143 MVNQLRSEAWKLKESNSSLQEKI 166
           +VNQLR EA +L+E+N  L E+I
Sbjct: 209 VVNQLRGEAHELQETNQKLLEEI 231

[Close]

BLAST of CmaCh09G009240 vs. TAIR 10
Match: AT4G14410.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-20
Identity = 48/81 (59.26%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 86  SKKRVRSESCS-ASSSKACREKFRRDRLNDRFLELGSILDPGRLPKTDKAAILVDAVRMV 145
           S+KR R+ SCS    +KACRE+ RR++LN+RF++L S+L+PGR PKTDK AIL DA+R++
Sbjct: 119 SRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRIL 178

Query: 146 NQLRSEAWKLKESNSSLQEKI 166
           NQLR EA KL+E+N  L E+I
Sbjct: 179 NQLRDEALKLEETNQKLLEEI 199

The following BLAST results are available for this feature:

BLAST of CmaCh09G009240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH37	7.2e-33	55.19	Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1	[more]
Q9C682	2.0e-30	50.65	Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=...	[more]
Q9LTC7	3.1e-20	60.24	Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1	[more]
Q8L467	3.5e-19	59.26	Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=...	[more]
Q9LT23	6.6e-10	51.52	Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=...	[more]

BLAST of CmaCh09G009240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F961	3.6e-59	83.12	transcription factor ILR3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A0A0L7P5	3.3e-57	79.22	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G416140 PE=4 S...	[more]
A0A6J1CDI6	4.4e-57	80.52	transcription factor ILR3-like OS=Momordica charantia OX=3673 GN=LOC111010560 PE...	[more]
A0A5A7TUD2	1.3e-56	77.92	Transcription factor ILR3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0L7N8	1.3e-56	78.57	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G415100 PE=4 S...	[more]

BLAST of CmaCh09G009240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535130.1	4.6e-61	84.42	transcription factor ILR3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937036.1	7.4e-59	83.12	transcription factor ILR3-like isoform X1 [Cucurbita moschata]	[more]
XP_038900262.1	8.2e-58	79.87	transcription factor ILR3-like [Benincasa hispida]	[more]
XP_022139711.1	9.0e-57	80.52	transcription factor ILR3-like [Momordica charantia]	[more]
XP_008454558.1	2.6e-56	77.92	PREDICTED: transcription factor ILR3 isoform X1 [Cucumis melo] >KAA0046458.1 tra...	[more]

BLAST of CmaCh09G009240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54680.1	5.1e-34	55.19	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.1	1.4e-31	50.65	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.2	7.2e-28	38.94	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G23210.1	2.2e-21	60.24	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G14410.1	2.5e-20	59.26	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 144..164
None	No IPR available	PANTHER	PTHR46133:SF1	TRANSCRIPTION FACTOR ILR3	coord: 12..165
None	No IPR available	CDD	cd11446	bHLH_AtILR3_like	coord: 104..165 e-value: 3.69266E-34 score: 113.197
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 102..153 e-value: 1.3E-6 score: 38.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 100..147 e-value: 8.8E-9 score: 35.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 96..147 score: 12.626784
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 97..165 e-value: 1.8E-10 score: 42.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 92..162
IPR044818	Transcription factor ILR3-like	PANTHER	PTHR46133	BHLH TRANSCRIPTION FACTOR	coord: 12..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G009240.1	CmaCh09G009240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity