CmaCh09G008970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G008970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Dynein light chain
Location	Cma_Chr09: 4441338 .. 4442442 (-)
RNA-Seq Expression	CmaCh09G008970
Synteny	CmaCh09G008970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACATGGGTGAGCCACACACCAGCCAAACTTTATCCTAAGCTTCTATATAACTAAACCTGCTTCCTTCCCCCTCCGCTCACATCCGCCATTTCCCCGCCGCCAACTCCGCCGGTGGCAGCCATGTTAGAAGGCAAAGCAGTCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGAACGCTCTGGACCTTGCGGCTAAGGCCCTTGACAGTTTTGATGTCACTGAACCCACTGACATTGCCCGTTTCATTAAAAAGGTAAAATTTAGGCTCGTTAGATATGAAAATGTTTTAGTTTTATGACTTGTTTTCAAAGTAAATGGTCTATGTTAGTAATAACTCCCGTAAATCGAACTGAGCTGATGTTACAATCAGCCAAGTCCCAATAGCTATAATCTCAAGCTCAGTACTAATACATATTGTCTGTTTTGATTCATTACGTATCGTTGTTAGGCTCACGATTTTTAAAACGAGTCTATTTGAGAGAGGTTTTCATATCTTTATAACAAATGTTTTGTTTCCATTTTCAATCGACGTGGAATCTTACCGTCACGATAGTTATTTTTTAATAGTAAAAATTTAAAATCGAGATAGATATATAACGAGTCAATTGAAAATTGAGCAGGAATTTGACGGGATGTATGGTGGAGGATGGCAATGCATAGTGGGAACGGATTTTGGGTCATTTGTGACACATTGTTGCGGATGCTTCATCTATTTTTGTGTTGGAAGCCTTGCAGTTTTGCTGTTCAAAGGCTCTTCTGGCTCTGAAAAACCTAACCCAACTCAATTTTCTATTTTGGAGACGATCAAGGGATGATCAGATGTTGGTAGAATTCGTGATTTTGAAATGGATAAAATCGTTTGTGATCATACGTTTAATTCTTTAAAGTTGATTTTATGATGGAAAAATTACGTTAAATCGACTTTGAATTATTAAATATATGTTTTTTTAATCATTTCAAAATCTCTTCTAAACATGCTGGTAAATTCTCGCATGATCGAAGTCAAGAAACATAACTGTGTTTTAGTGGGTTTTTGTTTTATATATGTATATGGACCATCTTAATGCTAATATATACGTATACTTTTGTTAGTACGA

mRNA sequence

TGGACATGGGTGAGCCACACACCAGCCAAACTTTATCCTAAGCTTCTATATAACTAAACCTGCTTCCTTCCCCCTCCGCTCACATCCGCCATTTCCCCGCCGCCAACTCCGCCGGTGGCAGCCATGTTAGAAGGCAAAGCAGTCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGAACGCTCTGGACCTTGCGGCTAAGGCCCTTGACAGTTTTGATGTCACTGAACCCACTGACATTGCCCGTTTCATTAAAAAGGAATTTGACGGGATGTATGGTGGAGGATGGCAATGCATAGTGGGAACGGATTTTGGGTCATTTGTGACACATTGTTGCGGATGCTTCATCTATTTTTGTGTTGGAAGCCTTGCAGTTTTGCTGTTCAAAGGCTCTTCTGGCTCTGAAAAACCTAACCCAACTCAATTTTCTATTTTGGAGACGATCAAGGGATGATCAGATGTTGGTAGAATTCGTGATTTTGAAATGGATAAAATCGTTTGTGATCATACGTTTAATTCTTTAAAGTTGATTTTATGATGGAAAAATTACGTTAAATCGACTTTGAATTATTAAATATATGTTTTTTTAATCATTTCAAAATCTCTTCTAAACATGCTGGTAAATTCTCGCATGATCGAAGTCAAGAAACATAACTGTGTTTTAGTGGGTTTTTGTTTTATATATGTATATGGACCATCTTAATGCTAATATATACGTATACTTTTGTTAGTACGA

Coding sequence (CDS)

ATGTTAGAAGGCAAAGCAGTCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGAACGCTCTGGACCTTGCGGCTAAGGCCCTTGACAGTTTTGATGTCACTGAACCCACTGACATTGCCCGTTTCATTAAAAAGGAATTTGACGGGATGTATGGTGGAGGATGGCAATGCATAGTGGGAACGGATTTTGGGTCATTTGTGACACATTGTTGCGGATGCTTCATCTATTTTTGTGTTGGAAGCCTTGCAGTTTTGCTGTTCAAAGGCTCTTCTGGCTCTGAAAAACCTAACCCAACTCAATTTTCTATTTTGGAGACGATCAAGGGATGA

Protein sequence

MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIKG

Homology

[Close]

BLAST of CmaCh09G008970 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.8e-18
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
          M E KAVI   DM + MQQ+A+D A +AL+ F++ +  DIA +IKKEFD  Y   W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCCGCFIYFCVGSLAVLLFK 90
          G +FGS+VTH    FIYF +G +AVLLFK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of CmaCh09G008970 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-17
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
          M + KAVI   DM + MQQ+A+D A +AL+ +++ +  DIA FIKKEFD  Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCCGCFIYFCVGSLAVLLFK 90
          G +FGS+VTH    FIYF +G +A+LLFK
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh09G008970 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-17
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
          M++ KAVI   DM   MQQ+A+D A +AL+ +++ +  DIA +IKKEFD  Y   W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCCGCFIYFCVGSLAVLLFK 90
          G +FGS+VTH    FIYF +G +A+LLFK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh09G008970 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.7e-17
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
          M + KAVI   DM + MQQ+A+D A +AL+ +++ +  DIA +IKKEFD  Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCCGCFIYFCVGSLAVLLFK 90
          G +FGS+VTH    FIYF +G +A+LLFK
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh09G008970 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.3e-17
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
          M + KAVI   DM + MQQ+A+D A +A++ +++ +  DIA +IKKEFD  Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GTDFGSFVTHCCGCFIYFCVGSLAVLLFK 90
          G +FGS+VTH    FIYF +G +A+LLFK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh09G008970 vs. ExPASy TrEMBL
Match: A0A6J1IHC9 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.9e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIKG 111
           GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIKG
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIKG 110

[Close]

BLAST of CmaCh09G008970 vs. ExPASy TrEMBL
Match: A0A6J1FDE1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111442998 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.3e-51
Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKAVIGETDMLQAMQQ+ALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIK 110
           GTDFGSFVTHCCGCFIYFCVGSLAVLLF+GSS SE+ +PTQ S+LET+K
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPTQLSVLETVK 109

[Close]

BLAST of CmaCh09G008970 vs. ExPASy TrEMBL
Match: A0A6J1FSQ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.1e-43
Identity = 88/111 (79.28%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKA++GETDMLQAMQQ+ALDLAAKALD FDVTE TDIARFIKKEFD  +GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEK-PNPTQFSILETIKG 111
           GTDFGSFVTHC GCFIYFCVGSLA+LLF+GS   ++ P+PT F+  ET+KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHFAASETLKG 111

[Close]

BLAST of CmaCh09G008970 vs. ExPASy TrEMBL
Match: A0A2N9J9Z2 (Dynein light chain OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61232 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.3e-43
Identity = 90/109 (82.57%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKAVIGETDMLQ MQQ+ALDLAAKALD FDVTE T+IARFIKKEFDG YG GWQCIV
Sbjct: 1   MLEGKAVIGETDMLQTMQQDALDLAAKALDFFDVTEATEIARFIKKEFDGTYGPGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIK 110
           GTDFGSFVTHC GCFIYFC+GSLA+LLFKGS+G E     QFS LET+K
Sbjct: 61  GTDFGSFVTHCSGCFIYFCIGSLAILLFKGSAGPE-AETNQFSALETVK 108

[Close]

BLAST of CmaCh09G008970 vs. ExPASy TrEMBL
Match: A0A6J1CDL8 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111010496 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.3e-43
Identity = 89/111 (80.18%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKA+IGETDMLQ MQQ+ALDLAAKALDSFDVTE TDIARFIKKEFD ++G GWQCIV
Sbjct: 1   MLEGKAIIGETDMLQGMQQDALDLAAKALDSFDVTEATDIARFIKKEFDRIHGPGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPT-QFSILETIKG 111
           GTDFGSFVTHC GCFIYFCVG+LAVLLF+GS+G ++  PT QF+ LE +KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGNLAVLLFRGSAGPQQTEPTDQFAALEALKG 111

[Close]

BLAST of CmaCh09G008970 vs. NCBI nr
Match: XP_022976611.1 (dynein light chain LC6, flagellar outer arm [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 3.9e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIKG 111
           GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIKG
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIKG 110

[Close]

BLAST of CmaCh09G008970 vs. NCBI nr
Match: XP_022936350.1 (dynein light chain LC6, flagellar outer arm [Cucurbita moschata])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKAVIGETDMLQAMQQ+ALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV
Sbjct: 1   MLEGKAVIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIK 110
           GTDFGSFVTHCCGCFIYFCVGSLAVLLF+GSS SE+ +PTQ S+LET+K
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPTQLSVLETVK 109

[Close]

BLAST of CmaCh09G008970 vs. NCBI nr
Match: XP_023535145.1 (dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 1.4e-50
Identity = 99/109 (90.83%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKA+IGETDMLQAMQQ+ALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKPNPTQFSILETIK 110
           GTDFGSFVTHCCGCFIYFCVGSLAVLLF+GSS SE+ +PTQ S+LET+K
Sbjct: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPTQLSVLETVK 109

[Close]

BLAST of CmaCh09G008970 vs. NCBI nr
Match: XP_038899068.1 (dynein light chain 2, cytoplasmic [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 8.1e-46
Identity = 93/112 (83.04%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKA+IGETDMLQAMQQ+AL+LAAKALDSFDVTE TDIARFIKKEFD +YGGGWQCIV
Sbjct: 1   MLEGKAIIGETDMLQAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDKIYGGGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSE---KPNPTQFSILETIK 110
           GTDFGSFVTHC GCFIYFCVGSLA+LLF+GS+ SE   +P PTQFS++ET+K
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSAASEEEQQPQPTQFSVMETLK 112

[Close]

BLAST of CmaCh09G008970 vs. NCBI nr
Match: XP_022941140.1 (dynein light chain 2, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 184.1 bits (466), Expect = 6.5e-43
Identity = 88/111 (79.28%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
           MLEGKA++GETDMLQAMQQ+ALDLAAKALD FDVTE TDIARFIKKEFD  +GGGWQCIV
Sbjct: 1   MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEK-PNPTQFSILETIKG 111
           GTDFGSFVTHC GCFIYFCVGSLA+LLF+GS   ++ P+PT F+  ET+KG
Sbjct: 61  GTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHFAASETLKG 111

[Close]

BLAST of CmaCh09G008970 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-37
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 0


Query: 1  MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
          MLEGKAV+G+TDM Q M+++AL LA+KALD FDVTEPT IARFIKKEFD  YG GWQCIV
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSSGSEKP 98
          GT FGSFVTHC GCFI+F VGSL +LLFKGS G   P
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGSVGEPAP 97

[Close]

BLAST of CmaCh09G008970 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-23
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 1  MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
          MLEGKA + ETDM   MQ  A+ +A+++LD FDV +   IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSS 93
          GT+FG F TH  G FIYF +G+L  L+FKG++
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92

[Close]

BLAST of CmaCh09G008970 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 100.5 bits (249), Expect = 8.7e-22
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MLEGKAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIV 60
          MLEGKA++ ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  YG GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCCGCFIYFCVGSLAVLLFKGSS 93
          G++FG F TH  G FIYF + +L  L+FKG+S
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAS 92

[Close]

BLAST of CmaCh09G008970 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 5   KAVIGETDMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDF 64
           +AVI   DM   MQ+ A+++A  A + + V +  DIA  IKKEFD  +G  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GSFVTHCCGCFIYFCVGSLAVLLFK 90
           GS+VTH    F+YF +   AVLLFK
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFK 121

[Close]

BLAST of CmaCh09G008970 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-15
Identity = 41/78 (52.56%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 12  DMLQAMQQNALDLAAKALDSFDVTEPTDIARFIKKEFDGMYGGGWQCIVGTDFGSFVTHC 71
           DM   MQ +A   A   LDS +      +A  +KKEFD  YG  W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  CGCFIYFCVGSLAVLLFK 90
            GCFIYF +  L VLLFK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

The following BLAST results are available for this feature:

BLAST of CmaCh09G008970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	9.8e-18	55.06	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	1.7e-17	52.81	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	2.8e-17	51.69	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	3.7e-17	51.69	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
Q3MHR3	8.3e-17	50.56	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]

BLAST of CmaCh09G008970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHC9	1.9e-56	100.00	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111476954 PE=3 SV=1	[more]
A0A6J1FDE1	5.3e-51	91.74	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111442998 PE=3 SV=1	[more]
A0A6J1FSQ1	3.1e-43	79.28	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111446528 PE=3 SV=1	[more]
A0A2N9J9Z2	5.3e-43	82.57	Dynein light chain OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61232 PE=3 SV=1	[more]
A0A6J1CDL8	5.3e-43	80.18	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111010496 PE=3 SV=1	[more]

BLAST of CmaCh09G008970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022976611.1	3.9e-56	100.00	dynein light chain LC6, flagellar outer arm [Cucurbita maxima]	[more]
XP_022936350.1	1.1e-50	91.74	dynein light chain LC6, flagellar outer arm [Cucurbita moschata]	[more]
XP_023535145.1	1.4e-50	90.83	dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]	[more]
XP_038899068.1	8.1e-46	83.04	dynein light chain 2, cytoplasmic [Benincasa hispida]	[more]
XP_022941140.1	6.5e-43	79.28	dynein light chain 2, cytoplasmic-like [Cucurbita moschata]	[more]

BLAST of CmaCh09G008970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27360.1	1.1e-37	75.26	Dynein light chain type 1 family protein	[more]
AT3G16120.1	1.6e-23	56.52	Dynein light chain type 1 family protein	[more]
AT1G52240.2	8.7e-22	54.35	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G15930.1	7.9e-15	48.24	Dynein light chain type 1 family protein	[more]
AT5G20110.1	7.9e-15	52.56	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 2.4E-45 score: 166.6
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 1.1E-32 score: 112.2
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..96
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.2E-31 score: 110.6
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF70	DYNEIN LIGHT CHAIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G008970.1	CmaCh09G008970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding