CmaCh09G008680 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G008680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
LocationCma_Chr09: 4266190 .. 4266606 (+)
RNA-Seq ExpressionCmaCh09G008680
SyntenyCmaCh09G008680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGCACTAATCTCCTCCGTTTCCCTCTCCTTCATCTCCACTCCCGGCCGCCGTCCACTCTCTTTTTTCCTGCCATTAAATCGCATCTCTCCGTCGTATCGATCGCTTTTCCGACCTCTCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAGGCTCTATCGTCGAGTCTCTCCCCAATGGGATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGCTACATATGTGGTAAAATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGAAATCGAAGCAGTACTTAG

mRNA sequence

ATGTCGAGCACTAATCTCCTCCGTTTCCCTCTCCTTCATCTCCACTCCCGGCCGCCGTCCACTCTCTTTTTTCCTGCCATTAAATCGCATCTCTCCGTCGTATCGATCGCTTTTCCGACCTCTCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAGGCTCTATCGTCGAGTCTCTCCCCAATGGGATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGCTACATATGTGGTAAAATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGAAATCGAAGCAGTACTTAG

Coding sequence (CDS)

ATGTCGAGCACTAATCTCCTCCGTTTCCCTCTCCTTCATCTCCACTCCCGGCCGCCGTCCACTCTCTTTTTTCCTGCCATTAAATCGCATCTCTCCGTCGTATCGATCGCTTTTCCGACCTCTCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAGGCTCTATCGTCGAGTCTCTCCCCAATGGGATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGCTACATATGTGGTAAAATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGAAATCGAAGCAGTACTTAG

Protein sequence

MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRNRSST
Homology
[Close]
BLAST of CmaCh09G008680 vs. ExPASy Swiss-Prot
Match: Q94KR7 (Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-31
Identity = 86/144 (59.72%), Postives = 94/144 (65.28%), Query Frame = 0 

Query: 7   LRFPLLH----LHSRPPSTLFFPAIKSHLSVVSIAFP----TSQFLRNPSHGPARFAL-- 66
           L  P+LH     H  P  T F P          +A P    T  FL  P   PA  AL  
Sbjct: 5   LHTPILHPRYCHHPTPSCTQFSP----------LALPPFHRTLSFLAPPPLLPAAPALSA 64

Query: 67  --MAKPPKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGD 126
              AKP KS   EQKW +EG I+ESLPNGMFRVRLDNEDLILGYI GKIRKN+VRILPGD
Sbjct: 65  ASAAKPDKSG--EQKWVHEGLIMESLPNGMFRVRLDNEDLILGYISGKIRKNYVRILPGD 124

Query: 127 RVRVEVSRYDSTKGRIVYRNRSST 139
           RV+VEV+RYDS+KGRIVYR RSST
Sbjct: 125 RVKVEVTRYDSSKGRIVYRLRSST 136

[Close]
BLAST of CmaCh09G008680 vs. ExPASy Swiss-Prot
Match: Q94KR9 (Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=infA PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-27
Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 65  STEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYD 124
           S EQKW++EGSI ESLPNGMFRV+LDN D++LGYI GKIRKNF+R+LPGDRV++EVSRYD
Sbjct: 81  SQEQKWTHEGSITESLPNGMFRVKLDNADVVLGYISGKIRKNFIRLLPGDRVKIEVSRYD 140

Query: 125 STKGRIVYRNR 136
           S+KGRI+YR R
Sbjct: 141 SSKGRIIYRLR 151

[Close]
BLAST of CmaCh09G008680 vs. ExPASy Swiss-Prot
Match: A0A370 (Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=infA PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-27
Identity = 55/70 (78.57%), Postives = 66/70 (94.29%), Query Frame = 0 

Query: 67  EQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDST 126
           EQKW++EG I ESLPNGMFRVRLDNEDLILGY+ GKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWTHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 127 KGRIVYRNRS 137
           +GRI+YR R+
Sbjct: 63  RGRIIYRLRN 72

[Close]
BLAST of CmaCh09G008680 vs. ExPASy Swiss-Prot
Match: Q09G11 (Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=4403 GN=infA PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-27
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 67  EQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDST 126
           EQKW +EG I ESLPNGMFRVRLDNEDLILGY+ GKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 127 KGRIVYRNRS 137
           +GRI+YR RS
Sbjct: 63  RGRIIYRLRS 72

[Close]
BLAST of CmaCh09G008680 vs. ExPASy Swiss-Prot
Match: Q7ICQ5 (Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=13533 GN=infA PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-27
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 0 

Query: 67  EQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEVSRYDST 126
           EQKW +EG I ESLPNGMFRVRLDNEDLILGY+ GKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 127 KGRIVYRNRS 137
           +GRI+YR R+
Sbjct: 63  RGRIIYRLRN 72

[Close]
BLAST of CmaCh09G008680 vs. ExPASy TrEMBL
Match: A0A6J1IP00 (uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.0e-72
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSST 139
           SRYDSTKGRIVYRNRSST
Sbjct: 121 SRYDSTKGRIVYRNRSST 138

[Close]
BLAST of CmaCh09G008680 vs. ExPASy TrEMBL
Match: A0A6J1FET6 (uncharacterized protein LOC111443299 OS=Cucurbita moschata OX=3662 GN=LOC111443299 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.0e-68
Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSSTNLLRFPLL LHSRPPSTLFFPAIKSHLSVVSIAF TSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSST 139
           SRYDS KGRIVYR+RSS+
Sbjct: 121 SRYDSNKGRIVYRHRSSS 138

[Close]
BLAST of CmaCh09G008680 vs. ExPASy TrEMBL
Match: A0A5A7V7J3 (Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003940 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.1e-57
Identity = 115/137 (83.94%), Postives = 123/137 (89.78%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSSTNLL+FPLL  H RPPSTL FP +KSHLSVVSI+FPTSQFL  PSH P  FALMAK 
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PK+D++EQK S+EGS+VESLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSS 138
           SRYDSTKGRIVYR RSS
Sbjct: 121 SRYDSTKGRIVYRLRSS 137

[Close]
BLAST of CmaCh09G008680 vs. ExPASy TrEMBL
Match: A0A6J1FLU6 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446393 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.9e-56
Identity = 111/137 (81.02%), Postives = 123/137 (89.78%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSSTNLL+FPLL    RPPST  FPAIKSH+SVVSI FP+SQFL NPSHGP  F  MAK 
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PKS+S+EQK+S+EGS++ESLPNGMFRV+LDNEDLILGYI GKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSS 138
           SRYDSTKGRIVYR+RS+
Sbjct: 121 SRYDSTKGRIVYRHRST 137

[Close]
BLAST of CmaCh09G008680 vs. ExPASy TrEMBL
Match: A0A6J1IW62 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480474 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.4e-55
Identity = 111/137 (81.02%), Postives = 122/137 (89.05%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSSTNLL+FPLL    RPP T  FP  KSHLSVVSI FP+SQFL NPSHGPA FA MAK 
Sbjct: 1   MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKS 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PKS+S+EQK+S+EGS++ESLPNGMFRV+LDNEDLILGYI GKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSS 138
           SRYDSTKGRIVYR+RS+
Sbjct: 121 SRYDSTKGRIVYRHRST 137

[Close]
BLAST of CmaCh09G008680 vs. NCBI nr
Match: XP_022976599.1 (uncharacterized protein LOC111476947 [Cucurbita maxima])

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSST 139
           SRYDSTKGRIVYRNRSST
Sbjct: 121 SRYDSTKGRIVYRNRSST 138

[Close]
BLAST of CmaCh09G008680 vs. NCBI nr
Match: XP_023535140.1 (uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 6.6e-69
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSSTNLLRFPLL LHSRPPSTLFFPAIKSHL VVSIAFPTSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLPVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSST 139
           SRYDSTKGRIVYR+RSS+
Sbjct: 121 SRYDSTKGRIVYRHRSSS 138

[Close]
BLAST of CmaCh09G008680 vs. NCBI nr
Match: KAG7024835.1 (Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.4 bits (690), Expect = 8.6e-69
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MS+TNLLRFPLL LHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSST 139
           SRYDSTKGRIVYR+RSS+
Sbjct: 121 SRYDSTKGRIVYRHRSSS 138

[Close]
BLAST of CmaCh09G008680 vs. NCBI nr
Match: XP_022936830.1 (uncharacterized protein LOC111443299 [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-67
Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSSTNLLRFPLL LHSRPPSTLFFPAIKSHLSVVSIAF TSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSST 139
           SRYDS KGRIVYR+RSS+
Sbjct: 121 SRYDSNKGRIVYRHRSSS 138

[Close]
BLAST of CmaCh09G008680 vs. NCBI nr
Match: XP_038899010.1 (translation initiation factor IF-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 235.3 bits (599), Expect = 3.1e-58
Identity = 117/138 (84.78%), Postives = 125/138 (90.58%), Query Frame = 0 

Query: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSST LL+FPLL  H RPPSTLFFPA+KSHLSVVSI FPT+QFL NPSH  A F LMAK 
Sbjct: 1   MSSTILLQFPLLQSHFRPPSTLFFPAVKSHLSVVSITFPTTQFLHNPSHASAGFVLMAKS 60

Query: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120
           PK+D++EQKWS+EGS+VESLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRNRSST 139
           SRYDSTKGRIVYR RSST
Sbjct: 121 SRYDSTKGRIVYRLRSST 138

[Close]
BLAST of CmaCh09G008680 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 0 

Query: 50  GPARFALMAKPPKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVR 109
           G A  +  AKP   + +  K   EG + ESLPNGMFRV L+N D ILGYICGKIRKNF+R
Sbjct: 54  GGANRSKPAKPQVKEGS-NKTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIR 113

Query: 110 ILPGDRVRVEVSRYDSTKGRIVYRNRS 137
           ILPGD+V+VE+S YDSTKGRI++R  S
Sbjct: 114 ILPGDKVKVEMSVYDSTKGRIIFRMSS 139

The following BLAST results are available for this feature:
BLAST of CmaCh09G008680 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94KR71.5e-3159.72Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA... [more]
Q94KR91.0e-2777.46Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=408... [more]
A0A3701.3e-2778.57Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=... [more]
Q09G111.3e-2780.00Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=44... [more]
Q7ICQ52.9e-2778.57Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=135... [more]
BLAST of CmaCh09G008680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IP009.0e-72100.00uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947... [more]
A0A6J1FET66.0e-6895.65uncharacterized protein LOC111443299 OS=Cucurbita moschata OX=3662 GN=LOC1114432... [more]
A0A5A7V7J38.1e-5783.94Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A6J1FLU66.9e-5681.02translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=... [more]
A0A6J1IW623.4e-5581.02translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=36... [more]
BLAST of CmaCh09G008680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022976599.11.9e-71100.00uncharacterized protein LOC111476947 [Cucurbita maxima][more]
XP_023535140.16.6e-6997.10uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG7024835.18.6e-6996.38Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosper... [more]
XP_022936830.11.2e-6795.65uncharacterized protein LOC111443299 [Cucurbita moschata][more]
XP_038899010.13.1e-5884.78translation initiation factor IF-1, chloroplastic [Benincasa hispida][more]
BLAST of CmaCh09G008680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G11175.12.6e-2362.07Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 73..133
e-value: 8.4E-21
score: 73.6
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 60..135
score: 19.299379
NoneNo IPR availableGENE3D2.40.50.140coord: 61..138
e-value: 2.7E-31
score: 109.0
NoneNo IPR availablePANTHERPTHR33370:SF1TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 51..137
IPR004368Translation initiation factor IF-1TIGRFAMTIGR00008TIGR00008coord: 67..133
e-value: 1.5E-33
score: 112.5
IPR004368Translation initiation factor IF-1PANTHERPTHR33370TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTICcoord: 51..137
IPR004368Translation initiation factor IF-1HAMAPMF_00075IF_1coord: 57..135
score: 22.743683
IPR004368Translation initiation factor IF-1CDDcd04451S1_IF1coord: 73..133
e-value: 2.21649E-32
score: 107.221
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 67..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G008680.1CmaCh09G008680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding