CmaCh09G008450 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G008450
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S20
LocationCma_Chr09: 4145125 .. 4147473 (+)
RNA-Seq ExpressionCmaCh09G008450
SyntenyCmaCh09G008450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAACTGCAATTATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAACGCTTCTTCCTCTTCTATGCCCCTTTCCCCATCTTCTTCGACCCTCAGATCTCTCAGTTTCTCCTCCAACGTTTCAGTTTCCGCCTTCTCCAATGGTGATTTCTTATGGATGTCATTTTTTTTTCTTTCTTTTATGGAAAAACGGTGAATTCTTTTTGAAGGAAGTATTGAATTGCTCGACTTACTTTTGTCCATTTTCGTATAGGGTGCCTGTCTATTAGTAAAGCTCAGAGGCCATTTCGCTACTCCGTGGTCTGCGAGGCGGCTCCTAAGAAGGCTGATTCTGCTGCAAAAAGGGCTCGGCAGGCTGAGAAAAGACGCGTTTATAATAAAGCCCGGAAGTCTGAAATCAAAACCAGAATGAAGAAGGTACCTAAATTTGGCTGGTTTATATGCATTGGATTTTCGTTATTGAATCCTGTTGGAATATATTGAAATCTCTTATAATGATGTGCTTCTGAATTCGTTTTATCTTGAGAGTATTATATTAGAATGGCTATTGAACTGAAACCAAGCAGCTCAAATTCTAACAGCTTCTCTCTTTGCCTAGAAACTTATATTTGGCCTTGCAAAGTTGAATTTCTGGGTGATTTTCCTTAAGATATGAGTGAATTTCTGAAATGATCATCTGCGTCTGACTGTCCCTGAAAGGGGGACTGGATGAAATTTGTATAATTAAGAGTTGGAAGGTAGATGCTTTCAATTTTGTATTCAGTACCAGTGGACAATTGGTTATATTATATATATGTTCTTATTTTGTTTGATAAGGTCATTGGTAGCTTTTGGCTGGGATGCTTCATGTAAAAATCTGATCGGTAGAGTTCTTATTGTTCAGAAATGATTATAAACACGAAGATTACAACGGTTACTACAGGAGAACTTATGTTTTGTCTCAGACAGCTTGTAATCAAGACTTAAATGATTGGATCTTCAGTGTTATTTACTCGGGCTTTTGATATATATCGGTTAGTTTAAACTATCAAGCAACCAGACTTGAGGGACAGTTGTAAAAGGACTAAAAATAAATGTATAGAAAATGGTAAAGTTGATAGAACATTTTTGTCTAGTGAAAGATTGCTTCAGCACAATCCTTCCTGATTGGCTAGTGGTATGTTTTTAGGCAGTTTTATTGTTGGTTATGACTGAACTTTAACTAATCTCCTTCAGAATTTCCCTTTTTTTCAGTTTATAACTCTAGAAGTCTTGAACTCATTCAAGACCATTAAGGTGTTTGAATGGCCTTTGGCTTAGCTCCAGATTTATTAGAATCCTTAGTTGTGAGTATCAACGATTATGGTGTGAGATCCCATCTTGGTTGGAGGGGAGAATGAAGCATTTCTTATAAGGGTGTAGAAATCTCTCCTCTAGTAGATGTGTTACCGTGAGGTTGACAGTGATACATACGAGGCTAAAGCGGACAATATCTACTAGTAGTGGATTTAGGCGGTTACAAATGGTATCATAGTCAGACACTGGATGGTGTGCCAACGAGGACGCAGGGCCCCCAAGGTGGTGGATTGTGAGATATCGCATCAGTTAGAGAGGGGAACGAAGCATTTCTTATAAGGGTGTGGAAACCTCTCTCTAGTAGATGCATTTTAAAACCGTGAGGCTGACCGGGATACGTAACGAGCCAAGACGGACAATATCTGCTTGCAACGGGTTTAGGCTATTACAAATGGTATCAGAGGCAAACATCTAGCTGAGTGCCAGCGAGGATGTGGGAGCGGACAATATACCCTAGGGATGGGTTTGAGTGTTTTCCATTTATAATTTAGAATTCATCCTTTTCTTGTTGGAGCAGAAGAAATGATTGGCTTTCCTCGTTATGCTTCGAACTGGTAGAAGTGTTCTTTTTTTTAAATGAATCTCTAAAGGGACGCTGCTTTCTGATACAATAGGTTGGTTTCTTTTCAATGACATCCATCTGCTAAAGAACAGAACTAAATCATACTCTTCATATGGGTATACATTGTGAAGAAAAAGAAAAGATTTTCTGTTTCTTTCAAGAACTTATGAGCATACTAATAGCCTCAGTCTCATACAATTCCAGGTTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGCACCGAAACACCGCAGCACGTCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGCTTCACCAGCAGCTGCCTAA

mRNA sequence

ATGGCGGCAACTGCAATTATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAACGCTTCTTCCTCTTCTATGCCCCTTTCCCCATCTTCTTCGACCCTCAGATCTCTCAGTTTCTCCTCCAACGTTTCAGTTTCCGCCTTCTCCAATGGGTGCCTGTCTATTAGTAAAGCTCAGAGGCCATTTCGCTACTCCGTGGTCTGCGAGGCGGCTCCTAAGAAGGCTGATTCTGCTGCAAAAAGGGCTCGGCAGGCTGAGAAAAGACGCGTTTATAATAAAGCCCGGAAGTCTGAAATCAAAACCAGAATGAAGAAGGTTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGCACCGAAACACCGCAGCACGTCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGCTTCACCAGCAGCTGCCTAA

Coding sequence (CDS)

ATGGCGGCAACTGCAATTATTAGTTGCTTCGCTCTTCCTTCTAAGTTCAGAAATCTTTCCCTTAACGCTTCTTCCTCTTCTATGCCCCTTTCCCCATCTTCTTCGACCCTCAGATCTCTCAGTTTCTCCTCCAACGTTTCAGTTTCCGCCTTCTCCAATGGGTGCCTGTCTATTAGTAAAGCTCAGAGGCCATTTCGCTACTCCGTGGTCTGCGAGGCGGCTCCTAAGAAGGCTGATTCTGCTGCAAAAAGGGCTCGGCAGGCTGAGAAAAGACGCGTTTATAATAAAGCCCGGAAGTCTGAAATCAAAACCAGAATGAAGAAGGTTATGGAAGCTTTAGATGATCTGAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGCACCGAAACACCGCAGCACGTCGAAAATCTCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGCTTCACCAGCAGCTGCCTAA

Protein sequence

MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASPAAA
Homology
[Close]
BLAST of CmaCh09G008450 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-44
Identity = 118/187 (63.10%), Postives = 140/187 (74.87%), Query Frame = 0 

Query: 8   SCFALPSKFRNLSLNASSSSMPLSP------SSSTL-RSLSFSSNVS-VSAFSNGCLSIS 67
           SC  L S+F+ LSL   S S P S       +S+TL  SLSFS +VS   AFS G L + 
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWV- 69

Query: 68  KAQRPFRYSVVCEAA--PKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLK 127
             Q+P R  +VCEAA   KKADSAAKRARQAEKRRVYNK++KSE +TRMKKV+EAL+ LK
Sbjct: 70  --QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 128 KKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EA+S IDKAVKV  LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]
BLAST of CmaCh09G008450 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-43
Identity = 110/172 (63.95%), Postives = 130/172 (75.58%), Query Frame = 0 

Query: 9   CFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQRPFRYS 68
           C ++ SK  NLS   SS+  P    +S+L+ L+FS+N+S   FS GC S+   QR   +S
Sbjct: 13  CLSISSKLHNLSF--SSTQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSFQRR-GFS 72

Query: 69  VVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEAQSEEV 128
           VVCE A  KKADSAAKR RQAE RR+ NKARKSE+KTRM+KV EALD LKKK  A +EE+
Sbjct: 73  VVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEEL 132

Query: 129 LPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180
           +PI+ LIAEA+S IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP+
Sbjct: 133 VPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPS 177

[Close]
BLAST of CmaCh09G008450 vs. ExPASy Swiss-Prot
Match: P62661 (30S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=rpsT PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 0 

Query: 70  VCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEAQSEEVLP 129
           + +  PK+  SA KR RQ+ KRR+ NKA+KS IKT  KK ++         E ++EE L 
Sbjct: 1   MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQ------EGKAEEAL- 60

Query: 130 IEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARR 166
             K++ +A S+IDKA K  TLH+N AARRKSRL R+
Sbjct: 61  --KIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK 87

[Close]
BLAST of CmaCh09G008450 vs. ExPASy Swiss-Prot
Match: P80380 (30S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=rpsT PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 0 

Query: 70  VCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEAQSEEVLP 129
           + +  PK+  SA KR RQ+ KRR+ NKA+KS IKT  KK ++         E ++EE L 
Sbjct: 1   MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQ------EGKAEEAL- 60

Query: 130 IEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARR 166
             K++ +A S+IDKA K  TLH+N AARRKSRL R+
Sbjct: 61  --KIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRK 87

[Close]
BLAST of CmaCh09G008450 vs. ExPASy Swiss-Prot
Match: B0C2C8 (30S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 80  SAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEAQSEEVLPIEKLIAEAFS 139
           SA KR   AE+ R+ NKA KS IKT  K+   A+DD K  P    +++  I+  ++  +S
Sbjct: 6   SAKKRILIAERNRLQNKAYKSAIKTFTKRFQAAVDDYKSNP--SDDQLAAIQNEMSVTYS 65

Query: 140 VIDKAVKVGTLHRNTAARRKSRLARRKKA 169
            IDKAVKVG  HRNT AR+K+ LAR  KA
Sbjct: 66  KIDKAVKVGVFHRNTGARKKAGLARILKA 92

[Close]
BLAST of CmaCh09G008450 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.2e-86
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180
           EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS
Sbjct: 121 EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of CmaCh09G008450 vs. ExPASy TrEMBL
Match: A0A6J1F6F1 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442556 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.2e-85
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATAIISCFALPSKFRNLSLNASSSSM LSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180
           EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS
Sbjct: 121 EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of CmaCh09G008450 vs. ExPASy TrEMBL
Match: A0A6J1IVC5 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480940 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.7e-73
Identity = 162/183 (88.52%), Postives = 169/183 (92.35%), Query Frame = 0 

Query: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62
           A A  SCFALPSKF NLSLNASSS +P+S SS  LRSLSFSSNVSVSAFS+GCLS+S AQ
Sbjct: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALRSLSFSSNVSVSAFSDGCLSMSGAQ 61

Query: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122
           RP RYSVVCEAAP KKADSAAKRARQAEKRR YNKARKSEI+TRMKK MEALDDLKKKPE
Sbjct: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPE 121

Query: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182
           AQSEEVLP+EKLIAEA+SVIDKAVKVGTLHRNTAA RKSRLARRKKAVEIHHGWYTPASP
Sbjct: 122 AQSEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPASP 181

Query: 183 AAA 185
           AAA
Sbjct: 182 AAA 184

[Close]
BLAST of CmaCh09G008450 vs. ExPASy TrEMBL
Match: A0A6J1FKZ1 (30S ribosomal protein S20, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446691 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.3e-73
Identity = 161/183 (87.98%), Postives = 168/183 (91.80%), Query Frame = 0 

Query: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62
           A A  SCFALPSKF NLSLNAS S +P+S SS  L+SLSFSSN+SVSAFSNGCLS+S AQ
Sbjct: 2   AAASFSCFALPSKFGNLSLNASPSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGAQ 61

Query: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122
           RP RYSVVCEAAP KKADSAAKRARQAEKRR YNKARKSEI+TRMKK MEALDDLKKKPE
Sbjct: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPE 121

Query: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182
           AQSEEVLPIEKLIAEA+SVIDKAVKVGTLHRNTAA RKSRLARRKKAVEIHHGWYTPASP
Sbjct: 122 AQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPASP 181

Query: 183 AAA 185
           AAA
Sbjct: 182 AAA 184

[Close]
BLAST of CmaCh09G008450 vs. ExPASy TrEMBL
Match: A0A6J1CG14 (30S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010468 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.4e-72
Identity = 159/183 (86.89%), Postives = 170/183 (92.90%), Query Frame = 0 

Query: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62
           A A I+CF++ SKFRNLSLNASSSS P S SSSTL+SL+FSSN+S  AFSNGCLS+S+AQ
Sbjct: 2   AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEAQ 61

Query: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122
           RP RYSVVCEAAP KK DSAAKRARQAEKRR+YNKARKSEIKTRMKKV+EALDDLKKKPE
Sbjct: 62  RPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKPE 121

Query: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182
           AQSEEVL IEKLIAEA+SVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWY PASP
Sbjct: 122 AQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASP 181

Query: 183 AAA 185
           AAA
Sbjct: 182 AAA 184

[Close]
BLAST of CmaCh09G008450 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328.2 bits (840), Expect = 4.6e-86
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180
           EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS
Sbjct: 121 EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of CmaCh09G008450 vs. NCBI nr
Match: XP_023534903.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.7 bits (831), Expect = 5.1e-85
Identity = 181/184 (98.37%), Postives = 183/184 (99.46%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATA+ISCF+LPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAVISCFSLPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180
           E QSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS
Sbjct: 121 EPQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of CmaCh09G008450 vs. NCBI nr
Match: XP_022935732.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 324.3 bits (830), Expect = 6.7e-85
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATAIISCFALPSKFRNLSLNASSSSM LSPSSSTLRSLSFSSNVSVSAFSNGCLSISK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120
           AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP
Sbjct: 61  AQRPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180
           EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS
Sbjct: 121 EAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of CmaCh09G008450 vs. NCBI nr
Match: XP_038899721.1 (30S ribosomal protein S20, chloroplastic [Benincasa hispida])

HSP 1 Score: 289.3 bits (739), Expect = 2.4e-74
Identity = 165/185 (89.19%), Postives = 175/185 (94.59%), Query Frame = 0 

Query: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60
           MAATA +SCF+LPSKFRNLSLNASSS +P SPSS TLRSLSFSSN SVSAFSNGCL++SK
Sbjct: 1   MAATA-VSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSK 60

Query: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120
           AQRP RYSVVCEAAPK KADSAAKR RQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180

Query: 181 SPAAA 185
           SPAAA
Sbjct: 181 SPAAA 184

[Close]
BLAST of CmaCh09G008450 vs. NCBI nr
Match: KAG6607892.1 (30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037419.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.0 bits (728), Expect = 4.5e-73
Identity = 162/183 (88.52%), Postives = 169/183 (92.35%), Query Frame = 0 

Query: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62
           A A  SCFALPSKF NLSLNASSS +P+S SS  L+SLSFSSN+SVSAFSNGCLS+S AQ
Sbjct: 2   AAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGAQ 61

Query: 63  RPFRYSVVCEAAP-KKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPE 122
           RP RYSVVCEAAP KKADSAAKRARQAEKRR YNKARKSEI+TRMKK MEALDDLKKKPE
Sbjct: 62  RPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKPE 121

Query: 123 AQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASP 182
           AQSEEVLPIEKLIAEA+SVIDKAVKVGTLHRNTAA RKSRLARRKKAVEIHHGWYTPASP
Sbjct: 122 AQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPASP 181

Query: 183 AAA 185
           AAA
Sbjct: 182 AAA 184

[Close]
BLAST of CmaCh09G008450 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-45
Identity = 118/187 (63.10%), Postives = 140/187 (74.87%), Query Frame = 0 

Query: 8   SCFALPSKFRNLSLNASSSSMPLSP------SSSTL-RSLSFSSNVS-VSAFSNGCLSIS 67
           SC  L S+F+ LSL   S S P S       +S+TL  SLSFS +VS   AFS G L + 
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWV- 69

Query: 68  KAQRPFRYSVVCEAA--PKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLK 127
             Q+P R  +VCEAA   KKADSAAKRARQAEKRRVYNK++KSE +TRMKKV+EAL+ LK
Sbjct: 70  --QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 128 KKPEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EA+S IDKAVKV  LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

The following BLAST results are available for this feature:
BLAST of CmaCh09G008450 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ASV63.5e-4463.1030S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2... [more]
P821301.3e-4363.9530S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P... [more]
P626612.1e-0947.9230S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 703... [more]
P803802.1e-0947.9230S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 /... [more]
B0C2C84.8e-0948.3130S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ... [more]
BLAST of CmaCh09G008450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IG572.2e-86100.0030S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1F6F13.2e-8599.4630S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IVC53.7e-7388.5230S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FKZ18.3e-7387.9830S ribosomal protein S20, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1CG142.4e-7286.8930S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of CmaCh09G008450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022976587.14.6e-86100.0030S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 3... [more]
XP_023534903.15.1e-8598.3730S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022935732.16.7e-8599.4630S ribosomal protein S20, chloroplastic-like [Cucurbita moschata][more]
XP_038899721.12.4e-7489.1930S ribosomal protein S20, chloroplastic [Benincasa hispida][more]
KAG6607892.14.5e-7388.5230S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of CmaCh09G008450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15190.12.5e-4563.10chloroplast 30S ribosomal protein S20, putative [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..119
NoneNo IPR availablePANTHERPTHR33398:SF530S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 1..183
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 79..165
e-value: 1.2E-22
score: 80.3
IPR002583Ribosomal protein S20TIGRFAMTIGR00029TIGR00029coord: 78..164
e-value: 7.9E-18
score: 62.8
IPR002583Ribosomal protein S20PANTHERPTHR3339830S RIBOSOMAL PROTEIN S20coord: 1..183
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 73..168
score: 15.848405
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110Ribosomal protein S20coord: 78..184
e-value: 2.1E-38
score: 132.8
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 79..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G008450.1CmaCh09G008450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding