CmaCh09G007240 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G007240
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 3452284 .. 3452951 (-)
RNA-Seq ExpressionCmaCh09G007240
SyntenyCmaCh09G007240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAGGCCCAAACCAAGAAGAAGCAGGCCTCCCATGGCGGCCATGTTCCCATTCCTCTCTGCGTCTCCAAGTCTCTCTCGCAGTCTACACCAAAACCTTTTGATGCGGTTTCCTCAAAGCAAAGCCGAACCCAGTGAGCTCCTCTTCCAAGCTCCAACCCACAAAAATGCTACCGACTCTTCCCTTTTCCTTCCCCTTTCTATTTCCCAAATCATCAATTCCAATAAATATTTTATGAATTTTGACCCTCCACACTTCATCTTCTCAACTCTTCTTTCCTTCTTTTATCCTCCTCCATTATTGCTCTCTCCTCCTCCTCCTCCTCCTCCTCTTAAATTTCCCTTCATATTCCTACGCTCGCGGGATTGCTTTATCTTTGAGAATCTTGCCTTCGATCATCGGTTAGTTGACACTTCATCTTTGAATGCTTTGGTTGGATGCTCCAATTCCTTGTTCTTGTTTTGATCTTTGATTTGTTGAAATTGCTTGATTCACTGGAAATGCTGGAAATCTGTTTGATGAACTTCAAATAGTGCTTGTTTTTAAGTCAAAGTAATCGGAGTTTTAGGCATTTTTTGTAATTTTGTTCATTGTTTAAGATCTTTGTAGCTTTCCTTTAATGGCGGATCCTTCTATACAGATATATATATTTATATATGGACTGA

mRNA sequence

ATGCGAAGGCCCAAACCAAGAAGAAGCAGGCCTCCCATGGCGGCCATGTTCCCATTCCTCTCTGCGTCTCCAAGTCTCTCTCGCAGTCTACACCAAAACCTTTTGATGCGGTTTCCTCAAAGCAAAGCCGAACCCAGTGAGCTCCTCTTCCAAGCTCCAACCCACAAAAATGCTACCGACTCTTCCCTTTTCCTTCCCCTTTCTATTTCCCAAATCATCAATTCCAATAAATATTTTATGAATTTTGACCCTCCACACTTCATCTTCTCAACTCTTCTTTCCTTCTTTTATCCTCCTCCATTATTGCTCTCTCCTCCTCCTCCTCCTCCTCCTCTTAAATTTCCCTTCATATTCCTACGCTCGCGGGATTGCTTTATCTTTGAGAATCTTGCCTTCGATCATCGATATATATATTTATATATGGACTGA

Coding sequence (CDS)

ATGCGAAGGCCCAAACCAAGAAGAAGCAGGCCTCCCATGGCGGCCATGTTCCCATTCCTCTCTGCGTCTCCAAGTCTCTCTCGCAGTCTACACCAAAACCTTTTGATGCGGTTTCCTCAAAGCAAAGCCGAACCCAGTGAGCTCCTCTTCCAAGCTCCAACCCACAAAAATGCTACCGACTCTTCCCTTTTCCTTCCCCTTTCTATTTCCCAAATCATCAATTCCAATAAATATTTTATGAATTTTGACCCTCCACACTTCATCTTCTCAACTCTTCTTTCCTTCTTTTATCCTCCTCCATTATTGCTCTCTCCTCCTCCTCCTCCTCCTCCTCTTAAATTTCCCTTCATATTCCTACGCTCGCGGGATTGCTTTATCTTTGAGAATCTTGCCTTCGATCATCGATATATATATTTATATATGGACTGA

Protein sequence

MRRPKPRRSRPPMAAMFPFLSASPSLSRSLHQNLLMRFPQSKAEPSELLFQAPTHKNATDSSLFLPLSISQIINSNKYFMNFDPPHFIFSTLLSFFYPPPLLLSPPPPPPPLKFPFIFLRSRDCFIFENLAFDHRYIYLYMD
Homology
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BLAST of CmaCh09G007240 vs. NCBI nr
Match: XP_023535035.1 (WD repeat-containing protein 26 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 7.0e-50
Identity = 110/123 (89.43%), Postives = 111/123 (90.24%), Query Frame = 0 

Query: 13  MAAMFPFLSASPSLSRSLHQNLLMRFPQSKAEPSELLFQAPTHKNATDSSLFLPLSISQI 72
           MAAMFPFLSASPSLSRSLHQNLLMRFPQSKA+PSELLFQAPTHKNATDSSLFLPLSISQI
Sbjct: 1   MAAMFPFLSASPSLSRSLHQNLLMRFPQSKAKPSELLFQAPTHKNATDSSLFLPLSISQI 60

Query: 73  INSNKYFMNFDPPHFIFSTLLSFFYPPPLLLSPPPPPPPLKFPFIFLRSRDCFIFENLAF 132
           INSNKYFMNFDPPHFI     SFFYPPPLLLS     PPLKFPFIFL SRDC IFENLAF
Sbjct: 61  INSNKYFMNFDPPHFI-----SFFYPPPLLLS-----PPLKFPFIFLCSRDCLIFENLAF 113

Query: 133 DHR 136
           DHR
Sbjct: 121 DHR 113

The following BLAST results are available for this feature:
BLAST of CmaCh09G007240 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G007240 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G007240 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023535035.17.0e-5089.43WD repeat-containing protein 26 homolog isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of CmaCh09G007240 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G007240.1CmaCh09G007240.1mRNA