CmaCh09G006770 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G006770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description50S ribosomal protein L13, chloroplastic-like
LocationCma_Chr09: 3192633 .. 3195725 (-)
RNA-Seq ExpressionCmaCh09G006770
SyntenyCmaCh09G006770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAAAAAAAAAAAAAAAAGAAGGGTTCCGCAAATTTATCCCTTCCCCGGGTTTCTCATTTTCGTATTCACAAAAGGTAGTCTTATCCGCTATCCATAGCAGAAATTCGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTTTGTACATTCCACTCTTAACAATGGGAGCAAAAGTAACAGAGGCATTGCCAGAAAGTCATTCGTTGATGGGTTTTCACTCCCACAATCAAAATCTTATTTGCTTCCAACTCAGACCACGATTACTCTGAATTCTCAGTCGAAGAGTTCGGCCGTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAGCGGTGGATGTTCGAGGGGGACGAACTCGATGGCCCTGTACGTCGGTATATCTTTTAAAATGTTTGTTCGTTTGCGCTAATTCTGGTAGTGGAAATGGTCTTATGGGTTCCAAGCAATCGTGTTCTTTTGGGAAGGGAGTTCAGTTTTTAATTTCTTTGGGGAGGGGAGCTCTGCCCAGTTCATTCAATTGCATTAAACTGGCTTCCCCACGTTTTACAGAAACTATTGAAAGTCGACCATATCATACCATTGTGGAGAGTCGTGGTTCCTAACATGGTATCGAAGCCATGCCCTTAATTTAGCCATGTCAGTAGGTCGAACAAAAAAGTTGTGTGTCATGCTCTTAACTTAGCTATGTTTATAGAATCTTTCTTTGTGTGTCATGCTCTTAACTTAACTATGTTAATAGAATCTTTCTTTGTGTGTCATGCTCTTAACTTAACTATGTCAATAGAATCTTCAAATGTTGATCAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAATAGTGACTCAAGTGTCGAACAAATGGTGTACTTTGAGGGCTCCATAGGCCTCAGGGGAGACTCTATTATGTACTTTGTTCGAGGGGAGGATTGTTGAGAATTGTTGGGAGAGGAGTCCCACGTCGGGATTATTGAGGATTGTTGGGAGAAAAGTTCCACATTGACTAATTAAGGGGTTGATCATGAATTTATAAGTAAGGAATACATCTCCATTGGTATGAACCTTTTTGGAGAAACCGAAAATAAAACCGTAAGAGCTTATGCTCAAAATGGACAGTATCATACCATTGGGGAGATTCGTGGTTCCTAACAATTGCCCTTACAACTGAACATACAAACCCCTTTTTGCTTGTTAAGCCAATGAGATGTTCATTCCCTGAATTTTGAAGAATTATTTCCTACTTCTGCGAGCTGTTTGTTTATTTCCCCACAGATTGGATATTCAGCAATCGCTGTTCTTTTCCATTCAGGACATATGGAACAAAACATGGTACCCGAAGGCTGTAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGATTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATTGTGGTATGTGGTTGCACTTGTTCATAATGTTCTATTGTGGCTTTCATAAGAAAAGAATGATCTATTGTGCCTGCAATCACATCACCATTAATTGATTAATTGTGAGCTGTGCATATGCTTTTGTGATACAAAATAAATAAGGTGTCTTAATCATGCCATGGATGGCAAGATCTATATATGTAGTTTAGATTAAGGAGGTTTTATTGTATTTTTTAAGTTTTAGAGATTTGTGTTTAAGATTATAAGTTAAATAGTCATTCATGTTGTTAAAGATTTTGGATATTAAGATGAAGTTTGCATAGTAAGTTTCTTAAGCCATGAGCTTGTTTCTTTGCATTTCTCGTGTTTAGACTTGCATGCTAGAGTCGTTCAAGTAGCCTTGATCAAACTATCTTGAGGAGTGATTCGAATCATGAGTTTAAAAACAAGTTTTATTTATTCTTGATCTTGATCATCAAGGTATTCTATTCCAAAACTTTTCCTTGGGTTGATTCTTATCGTTTTTGGGATTCTTGGATAATTTAGATCTAGAGATCTCGTTCTTTAGCAAGGTTTTTAGATCAAATCCTAAGAGTTTCATATGTTCTGTCCGCTCAATTTGAACTTACTTGCTATCTGTTTTCAGTCCTCTCCAACCGAGGTGAGATCTCACACTTTCTTGGACCTTTCTAGGTAAATGCAGAAAAAGTTGCCGTGTCGGGTAGAAAGAGGACACAAAAACTATACCGGAGGCATTCGGGGAGACCAGGTGGTATGACAGTAGAAACTTTTGACCAGCTACAACAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGGTAAGCGATTCCGACTACTTAAGTGCTATATCATATCATATACATCTAAACGACTCTGCAAACGGAATATTTATGGGTGGTAGAGGGATTGCTAAAGTTTTGGGCAACTCTCCATTTAGGAAAATTATGTCAAAAGAGATGCAGCAAGTATAGTTTCTACTTTATTTGGTAGATCTGTTTTGTTAGAAGCTTTAGTTGGACAGTTAAGATGGCCTTTCGTGTTTTGGTTGCTGTACACTATTGGTTAGCTATGTTCCATCTTACGGAAGAGTTCGTTAAACTCGTCACTATGGGGTTTACAGCTTCAGATTCCCATATAAGTTGTGCCAATGGTTCTCACGTTCTATAACATTGCATTCTAGAAGCAATGTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTTCCGAGTAAACGCATTTTAAAATTGTGAGGCTGATGGCGATATGTAACAGACTGCCAAGACAAATAATATCTACTAGCGGTGGGCTTGGGCTGTTACACAGGAAGTTTTGTAAACTACTAGAAGAATTTCCCTGTTTGCCTCCATTGACGTTGTTATTGGCTGTTTCAAACCATGACAATTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACCTGAAGGTTTACAAAGGACCAGACCATCCCCATGAGGCACAAAAGCCAGTTGAGCTCCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAG

mRNA sequence

TATAAAAAAAAAAAAAAAAAGAAGGGTTCCGCAAATTTATCCCTTCCCCGGGTTTCTCATTTTCGTATTCACAAAAGGTAGTCTTATCCGCTATCCATAGCAGAAATTCGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTTTGTACATTCCACTCTTAACAATGGGAGCAAAAGTAACAGAGGCATTGCCAGAAAGTCATTCGTTGATGGGTTTTCACTCCCACAATCAAAATCTTATTTGCTTCCAACTCAGACCACGATTACTCTGAATTCTCAGTCGAAGAGTTCGGCCGTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAGCGGTGGATGTTCGAGGGGGACGAACTCGATGGCCCTGACATATGGAACAAAACATGGTACCCGAAGGCTGTAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGATTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCGGGTAGAAAGAGGACACAAAAACTATACCGGAGGCATTCGGGGAGACCAGGTGGTATGACAGTAGAAACTTTTGACCAGCTACAACAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACCTGAAGGTTTACAAAGGACCAGACCATCCCCATGAGGCACAAAAGCCAGTTGAGCTCCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAG

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTTTGTACATTCCACTCTTAACAATGGGAGCAAAAGTAACAGAGGCATTGCCAGAAAGTCATTCGTTGATGGGTTTTCACTCCCACAATCAAAATCTTATTTGCTTCCAACTCAGACCACGATTACTCTGAATTCTCAGTCGAAGAGTTCGGCCGTTCAAGTGCGAGCTCAGGAGCTGGATCGTGTCCCTTTAGAACAGCGGTGGATGTTCGAGGGGGACGAACTCGATGGCCCTGACATATGGAACAAAACATGGTACCCGAAGGCTGTAGATCATGTGAACACAGAAAAACCTTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGATTAGCTTCGACCATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCGGGTAGAAAGAGGACACAAAAACTATACCGGAGGCATTCGGGGAGACCAGGTGGTATGACAGTAGAAACTTTTGACCAGCTACAACAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCGAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACCTGAAGGTTTACAAAGGACCAGACCATCCCCATGAGGCACAAAAGCCAGTTGAGCTCCCAATTAGGGACAAAAGGATAAACAAGGAAAGATAG

Protein sequence

MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQSKSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Homology
[Close]
BLAST of CmaCh09G006770 vs. ExPASy Swiss-Prot
Match: Q9SYL9 (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.3e-89
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MA+LC+SS+         L++ S  + G  RKS   GFSL    + +      + + + S
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSSAVQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVV 120
           K   +QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA DHVNT+KPW+VV
Sbjct: 61  K-RGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]
BLAST of CmaCh09G006770 vs. ExPASy Swiss-Prot
Match: P12629 (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 PE=1 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 9.1e-80
Identity = 146/218 (66.97%), Postives = 169/218 (77.52%), Query Frame = 0 

Query: 45  SYLLPTQTTITLNSQSKSSAVQVRAQE--------------LDRVPLEQRWMFEGDELDG 104
           S+  PT       S  KS++   +  E              +  VPL+QRWMF  +E  G
Sbjct: 33  SFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATG 92

Query: 105 PDIWNKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAF 164
           PDIWN TWYPK+ DHV T+K WYVVDATD ILGR+ASTIA HIRGK+L +YTPSVDMGAF
Sbjct: 93  PDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAF 152

Query: 165 VIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGR 224
           VIVVNA+KVAVSG+KRTQKLYRRHSGRPGG+  ETFDQLQ+RIPERIIEHAVRGMLPKGR
Sbjct: 153 VIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGR 212

Query: 225 LGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER 249
           LGR LFNHLKVYKG +HPH+AQ+P++LP+RDKRI  E+
Sbjct: 213 LGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRVEK 250

[Close]
BLAST of CmaCh09G006770 vs. ExPASy Swiss-Prot
Match: B8HMT1 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplM PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-50
Identity = 98/146 (67.12%), Postives = 114/146 (78.08%), Query Frame = 0 

Query: 95  NKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK  P YTPS+D G FVIVV
Sbjct: 2   NKTYLPST---TSLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPIR 241
           LF  LKVY GPDHPH+AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

[Close]
BLAST of CmaCh09G006770 vs. ExPASy Swiss-Prot
Match: Q3MF94 (50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplM PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.5e-50
Identity = 99/145 (68.28%), Postives = 114/145 (78.62%), Query Frame = 0 

Query: 95  NKTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEKVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVELPI 240
           LF  LKVY GP HPH+AQKP EL I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]
BLAST of CmaCh09G006770 vs. ExPASy Swiss-Prot
Match: B1WQT8 (50S ribosomal protein L13 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplM PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-49
Identity = 91/131 (69.47%), Postives = 110/131 (83.97%), Query Frame = 0 

Query: 109 EKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQ 168
           ++ WYV+DATD+ LGRLA  +A  +RGK+ PTYTP +D G FVI++NA+KVAV+GRK TQ
Sbjct: 13  DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQ 72

Query: 169 KLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHP 228
           KLYRRHSGRPGGM +ETF++LQQRIPERIIE AV+GMLPK  LGR LF  LKVY GP+HP
Sbjct: 73  KLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNALGRQLFTKLKVYPGPNHP 132

Query: 229 HEAQKPVELPI 240
           H+AQKP EL +
Sbjct: 133 HQAQKPEELTL 143

[Close]
BLAST of CmaCh09G006770 vs. ExPASy TrEMBL
Match: A0A6J1IPT4 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477096 PE=3 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 6.9e-139
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmaCh09G006770 vs. ExPASy TrEMBL
Match: A0A6J1F6Z3 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442721 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 2.9e-137
Identity = 245/248 (98.79%), Postives = 245/248 (98.79%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGI RKSFVDGF LPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS VQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmaCh09G006770 vs. ExPASy TrEMBL
Match: A0A6J1FT16 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446606 PE=3 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.6e-124
Identity = 225/248 (90.73%), Postives = 230/248 (92.74%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSST TF +HSTLNN + SNR I R S V GF LPQSKS  L TQTTITL S+ 
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmaCh09G006770 vs. ExPASy TrEMBL
Match: A0A6J1IW42 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480461 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 2.8e-124
Identity = 225/248 (90.73%), Postives = 230/248 (92.74%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSST TF +HST NN + SNR I RKS V GF LPQSKS  L TQTTITL S+ 
Sbjct: 1   MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWN TWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmaCh09G006770 vs. ExPASy TrEMBL
Match: A0A0A0KZG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.4e-122
Identity = 219/248 (88.31%), Postives = 229/248 (92.34%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTF +HSTL NG+ SN+   R S +  F LP SKS  L TQT+I+L S S
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           K SA+QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmaCh09G006770 vs. NCBI nr
Match: XP_022976844.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 503.1 bits (1294), Expect = 1.4e-138
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmaCh09G006770 vs. NCBI nr
Match: XP_022935984.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 497.7 bits (1280), Expect = 5.9e-137
Identity = 245/248 (98.79%), Postives = 245/248 (98.79%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGI RKSFVDGF LPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS VQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmaCh09G006770 vs. NCBI nr
Match: KAG6591772.1 (50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 497.3 bits (1279), Expect = 7.8e-137
Identity = 244/248 (98.39%), Postives = 245/248 (98.79%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSSTPTFFVHSTLNNGSKSNRGI RKSFVDGF LPQSKSYLLPTQTTITLNSQS
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS +QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK
Sbjct: 61  KSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmaCh09G006770 vs. NCBI nr
Match: XP_023536479.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 492.7 bits (1267), Expect = 1.9e-135
Identity = 244/249 (97.99%), Postives = 245/249 (98.39%), Query Frame = 0 

Query: 1   MAMLCA-SSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQ 60
           MAMLCA SSSTPTFFVHSTLNNGSKSNRGI RKSFVDGF LPQSKSYLLPTQTTITLNSQ
Sbjct: 1   MAMLCASSSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQ 60

Query: 61  SKSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATD 120
           SKSS +QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATD
Sbjct: 61  SKSSGIQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATD 120

Query: 121 KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG 180
           KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG
Sbjct: 121 KILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPG 180

Query: 181 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI 240
           GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI
Sbjct: 181 GMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPI 240

Query: 241 RDKRINKER 249
           RDKRINKER
Sbjct: 241 RDKRINKER 249

[Close]
BLAST of CmaCh09G006770 vs. NCBI nr
Match: XP_022941245.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 455.3 bits (1170), Expect = 3.4e-124
Identity = 225/248 (90.73%), Postives = 230/248 (92.74%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MAMLCASSST TF +HSTLNN + SNR I R S V GF LPQSKS  L TQTTITL S+ 
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KSSAVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120
           KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of CmaCh09G006770 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 330.9 bits (847), Expect = 9.0e-91
Identity = 171/253 (67.59%), Postives = 198/253 (78.26%), Query Frame = 0 

Query: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIARKSFVDGFSLPQSKSYLLPTQTTITLNSQS 60
           MA+LC+SS+         L++ S  + G  RKS   GFSL    + +      + + + S
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSL----TAISKPSVRVGIYANS 60

Query: 61  KSSAVQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVV 120
           K   +QV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA DHVNT+KPW+VV
Sbjct: 61  K-RGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 ELPIRDKRINKER 249
           +LPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]
BLAST of CmaCh09G006770 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 0 

Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

[Close]
BLAST of CmaCh09G006770 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 48/125 (38.40%), Postives = 70/125 (56.00%), Query Frame = 0 

Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +GRK T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

The following BLAST results are available for this feature:
BLAST of CmaCh09G006770 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SYL91.3e-8967.5950S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
P126299.1e-8066.9750S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 P... [more]
B8HMT13.4e-5067.1250S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
Q3MF947.5e-5068.2850S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937... [more]
B1WQT82.2e-4969.4750S ribosomal protein L13 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) ... [more]
BLAST of CmaCh09G006770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IPT46.9e-139100.0050S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1F6Z32.9e-13798.7950S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1FT161.6e-12490.7350S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IW422.8e-12490.7350S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A0A0KZG13.4e-12288.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1[more]
BLAST of CmaCh09G006770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022976844.11.4e-138100.0050S ribosomal protein L13, chloroplastic-like [Cucurbita maxima][more]
XP_022935984.15.9e-13798.7950S ribosomal protein L13, chloroplastic-like [Cucurbita moschata][more]
KAG6591772.17.8e-13798.3950S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_023536479.11.9e-13597.9950S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022941245.13.4e-12490.7350S ribosomal protein L13, chloroplastic-like [Cucurbita moschata][more]
BLAST of CmaCh09G006770 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G78630.19.0e-9167.59Ribosomal protein L13 family protein [more]
AT3G01790.11.2e-1838.40Ribosomal protein L13 family protein [more]
AT3G01790.21.2e-1838.40Ribosomal protein L13 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036899Ribosomal protein L13 superfamilyGENE3D3.90.1180.10Ribosomal protein L13coord: 101..244
e-value: 8.7E-61
score: 205.9
IPR036899Ribosomal protein L13 superfamilySUPERFAMILY52161Ribosomal protein L13coord: 107..240
IPR005823Ribosomal protein L13, bacterial-typeTIGRFAMTIGR01066TIGR01066coord: 107..237
e-value: 3.3E-56
score: 187.0
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 111..228
e-value: 4.2E-44
score: 149.5
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 67..245
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 112..238
score: 27.352219
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 112..225
e-value: 3.11895E-64
score: 193.875
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..248
NoneNo IPR availablePANTHERPTHR11545:SF27BNAA02G18970D PROTEINcoord: 67..245
IPR023563Ribosomal protein L13, conserved sitePROSITEPS00783RIBOSOMAL_L13coord: 202..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G006770.1CmaCh09G006770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017148 negative regulation of translation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome