CmaCh09G006500 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G006500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 3090352 .. 3092209 (-)
RNA-Seq ExpressionCmaCh09G006500
SyntenyCmaCh09G006500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCATCACGAGAACTCGAGAGCTACGGGCCAAAAATGGGAATTGAATTGGATGCTTGTGGTCAGTGGAATTACTGTCCTCAATTGCCGTAACTTGCAAAAATGGTCTTTGATGATTAACCCTCGTGTAGATGGAGATCAACTCTCTGGGGAGCTGGCCGAGGTAAATTCACACGTTAAAGATGTTCAAAACATTGGTTTGGACAATAGAATGCACGAAAAGATGACAGTTTAGGCAGGTAAGAATGTTCAGGGTTGCTGCAATGTTGTGTTTTCTCGACCTTTTTTGAGGAAACACACTCTGCTCAGCCCTTGTTTAGTTTGAATATGGTGCGAGGGAGCTAAAGTTATAAGGGGATAAAGCAGGTGGGAATAGAAAACAATTTGTACAGAAACTAATGGCCTGGGGGAGCAGCAGCAGGGGTTGTGTTTGAAGGTGTCAAAATCTTAGAATGGCGTTAATGCCTAATTGACATGTACATACCATACCCCCCCTCTTCATTTGAAATTATAGTAATTCTTTTGTTGGCAGTTTCCATCCCTTTTCTCTACCTAAGTTGTAACTGTGCCTACCACATTTAATATTTGTATGAAATTGTGCAGTGCTTTTGTGTTATTATTGAACAGGACAAACTCTACACATGGAACTTGGGTTAATGCCCCAACCCATGGGCGGTGTGCCTTCCTTTTAGTAGCTTGCGTATTGAATTGATCATTCCCTCTGTTTTGTTTTACTTTATTTTCTTTTTAGTCCACACAATGGTCGACGAGGATGTTTCTTTACCATATTGTTTAATTCAAAGACTCTTTATTTATGTTCTTATAGGTCTGTTTTGACAAGTTTTTAGTTCAATACTCAAGCTATGACGTTTTATGCATTTGATTGATAGTGAGATCTGTATTGCATGGAGCATGCTATTTTGAATCTGCCACCAGACCAGGAGAGTATGATCTGACTGATTGATTTCAAGGATTTTGACATGTCAATATCTCATTGAAAGCATCAAAGGAAACTGCACATGTTTTACGGGAACATCATCCCGAACTTCTTGGATTGACAATTCTATACATCTGTAACCGTTTAAGTTTACCGCTAGCAGATATTGTCTTATTTGGGTTTTTCCTCAGGGTTTTAAACGCCTGATAGGGAGAGGTATCTCTTTTGAATCATTATGCAATCTTATTGTTACTTGTCCTTCAAATGTGTCTGAATTTACTGTTCATCTCACTATGATGTGTGGTCCATATAGGAGAGTTCTAGTATCTATACTAAACTGCCATTTCTGTGTACCTGCTGCAATTATTTGTTGTTTACACTGCTGGATGATGTACTGTTTTGTTTACAGGTTGCAAAGCCTTCCCTGGAGACAAAAACAGCCAACAAAGTGAAATTCGTTTACTCCAAGAGGACACTAGGAGGATGTGTTTGATATGGACCAGCTGGTGCCTGCATTTGGTGGAAACAATAATGCTGGTTTCAACATAACCAAACATGCCGAGATGATGAAAGAACACAGTAAGCAGAAAAACCTCGAAAACTCTTCTTGTGAATCCTCAGAGATTCAAGTTCAACTCATGAAGGTCTAGTGTTTGAAGAGTGAAGACAGTTCCATATCAAATTATGCAATAATCTCTCATTCTTCTTGAAAGTGGCTGAAGAAATCTGTCCATCAGTATGTTGTGAGCCGACAGTGATCTAAACATGTTTGGTTGTGTTAATTTTGTTTTTAAGTCAGTAGTTGATGGAACTCTAATGATTTGTGAAAAAGGTGAAACATTCAACTGATGCGTGCATTTAAGGCATTCTTCCAACCACAACACTCACTGCTTCACCCCTATCAAACCATTCTTCCCCA

mRNA sequence

ATGTTCCATCACGAGAACTCGAGAGCTACGGGCCAAAAATGGGAATTGAATTGGATGCTTGTGGTCAGTGGAATTACTGTCCTCAATTGCCGTAACTTGCAAAAATGGTCTTTGATGATTAACCCTCGTGTAGATGGAGATCAACTCTCTGGGGAGCTGGCCGAGGTTGCAAAGCCTTCCCTGGAGACAAAAACAGCCAACAAAGTGAAATTCGTTTACTCCAAGAGGACACTAGGAGGATGTGTTTGATATGGACCAGCTGGTGCCTGCATTTGGTGGAAACAATAATGCTGGTTTCAACATAACCAAACATGCCGAGATGATGAAAGAACACAGTAAGCAGAAAAACCTCGAAAACTCTTCTTGTGAATCCTCAGAGATTCAAGTTCAACTCATGAAGGTCTAGTGTTTGAAGAGTGAAGACAGTTCCATATCAAATTATGCAATAATCTCTCATTCTTCTTGAAAGTGGCTGAAGAAATCTGTCCATCAGTATGTTGTGAGCCGACAGTGATCTAAACATGTTTGGTTGTGTTAATTTTGTTTTTAAGTCAGTAGTTGATGGAACTCTAATGATTTGTGAAAAAGGTGAAACATTCAACTGATGCGTGCATTTAAGGCATTCTTCCAACCACAACACTCACTGCTTCACCCCTATCAAACCATTCTTCCCCA

Coding sequence (CDS)

ATGTTCCATCACGAGAACTCGAGAGCTACGGGCCAAAAATGGGAATTGAATTGGATGCTTGTGGTCAGTGGAATTACTGTCCTCAATTGCCGTAACTTGCAAAAATGGTCTTTGATGATTAACCCTCGTGTAGATGGAGATCAACTCTCTGGGGAGCTGGCCGAGGTTGCAAAGCCTTCCCTGGAGACAAAAACAGCCAACAAAGTGAAATTCGTTTACTCCAAGAGGACACTAGGAGGATGTGTTTGA

Protein sequence

MFHHENSRATGQKWELNWMLVVSGITVLNCRNLQKWSLMINPRVDGDQLSGELAEVAKPSLETKTANKVKFVYSKRTLGGCV
Homology
[Close]
BLAST of CmaCh09G006500 vs. NCBI nr
Match: KAG6591751.1 (hypothetical protein SDJN03_14097, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 19 MLVVSGITVLNCRNLQKWSLMINPRVDGDQLSGELAEVAKPSLETKTANKVKFVYSKRTL 78
          MLVVSGITVL CRNLQKWSLMINPRVDGDQLSGELAEVAKPSLETKTA KVKFVYSKRTL
Sbjct: 1  MLVVSGITVLICRNLQKWSLMINPRVDGDQLSGELAEVAKPSLETKTAKKVKFVYSKRTL 60

Query: 79 GGCV 83
          GGCV
Sbjct: 61 GGCV 64

[Close]
BLAST of CmaCh09G006500 vs. NCBI nr
Match: KAG7024633.1 (hypothetical protein SDJN02_13451, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 44 VDGDQLSGELAEVAKPSLETKTANKVKFVYSKRTLGGCV 83
          +DGDQLSGELAEVAKPSLETKTA KVKFVYSKRTLGGCV
Sbjct: 14 LDGDQLSGELAEVAKPSLETKTAKKVKFVYSKRTLGGCV 52

The following BLAST results are available for this feature:
BLAST of CmaCh09G006500 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G006500 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G006500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591751.12.7e-2596.88hypothetical protein SDJN03_14097, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024633.11.1e-1094.87hypothetical protein SDJN02_13451, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh09G006500 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G006500.1CmaCh09G006500.1mRNA