CmaCh09G006140 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G006140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 2904513 .. 2905887 (+)
RNA-Seq ExpressionCmaCh09G006140
SyntenyCmaCh09G006140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCACATAGATTGCCTAAGAATTCATTGTACCTCGAAACCCCAAAGCTGCTCTTGGTTTCGACAAGAACTTCGACCACGATGGCCAACGTCTGCATTGCTTGTCCACTTAATTGGTGCTTACCAGGTGAAATTCTCCAACATGAATGCCATTGTTAGTACTCCCATCACTTAATGTTCTAAGTTCTGTAAATGAACACTGTAACCTGCAGGTCTTCTGCCAACCTGTTGTATGGCTTTATGGGTAAATGGTGCAGCACAAAGTGGGCAGGAAAGTAAATTCATGACCAAGGAGCACAGTATTAACTTACCTTTTAAAGGAGAGTATCAGCTCAACTACTTCACCTTCATTTTGGCCATTGACAGTATACTTGCCCATAGAGGTGTACTTGGCAAAAACTAAATTTCCCAGATTCTCTTTCACCTGGATCTGGCCCGAAGATATTGAGCACGAGATGGATCCATTCAAGGCTTGGCCCAAGATGTCAAGACATACAAACCCTTCAAAACTTGAACTGATTAGTACAAAATCCTAGTAATAATAAAAACACCACCTGGAGAAAGCATATTATTGTCTCGAGTGAGTTTAAGTTTATGACTGCTACTAAAATTTCAACAATGTTAACAAAGCCAAAACATAATGAAGATACGTCTTAAGAGGGAAAAAACAATGAAATTTCTACCCCTTATGTATTTTTTTAACCCCTTAGTACAATTTTTGCAGTCAAGGAACCAAGATTTTCAAATGCTGAAGAGTTTCACAAAAATATGGCCCTCGTTAGGCTGTGTTTACATATAGAGGTGAAAAATGTCACAAGGCCATAAACTTCAGATATTATAGACTGCAGCTCCCAAGTGTTGTCAAAATTTCCAGATTATGGCAAAACTAGCGGCCCCAAGGCGTATCAGCAGTTAATACTCGTCTGTGCAACATCCTTTCTCCAAAACAATCAGCCCAGAGATAAGAAAGTGGTCATTGTATACCTACAATCAGAAATAAACTTCGCCTATGACCAAAGGAAACAGCCAAACTTTATAGTTTCCCGAATAGAACAAATCAACTAGACTCCGTCTCGCTGATTACAAAAGCTTGAATAAGACTCTGAGCCGCATGGGTTTGCTCAGGCGTTCCAGAAATGATAATCACAGTTTCAACAGCTCCTTGCTTTGGCTCAGTAATCGTAATTTTTGCATCAGAAATCTACATGAAAGATGTGTTTAGTGAGATAGTAGTGGCTATGAAATACGTATCCACATTCCAGTAGATTACTAATTGGAGATCTCCCTTCCTACTTTCTATTTTTCACGACGAAAAGCTTTCTCATTATAGATTACAAGTAGGAACTTCATTTTCGTTTTCATTTTCAAATGA

mRNA sequence

ATGGCTGCACATAGATTGCCTAAGAATTCATTGTACCTCGAAACCCCAAAGCTGCTCTTGGTTTCGACAAGAACTTCGACCACGATGGCCAACGTCTGCATTGCTTGTCCACTTAATTGGTGCTTACCAGGTCTTCTGCCAACCTGTTGTATGGCTTTATGGGTAAATGGTGCAGCACAAAGTGGGCAGGAAAGCGTTCCAGAAATGATAATCACAGTTTCAACAGCTCCTTGCTTTGGCTCAGTAATCGTAATTTTTGCATCAGAAATCTACATGAAAGATGTGTTTAGTGAGATAGTAGTGGCTATGAAATACATTACAAGTAGGAACTTCATTTTCGTTTTCATTTTCAAATGA

Coding sequence (CDS)

ATGGCTGCACATAGATTGCCTAAGAATTCATTGTACCTCGAAACCCCAAAGCTGCTCTTGGTTTCGACAAGAACTTCGACCACGATGGCCAACGTCTGCATTGCTTGTCCACTTAATTGGTGCTTACCAGGTCTTCTGCCAACCTGTTGTATGGCTTTATGGGTAAATGGTGCAGCACAAAGTGGGCAGGAAAGCGTTCCAGAAATGATAATCACAGTTTCAACAGCTCCTTGCTTTGGCTCAGTAATCGTAATTTTTGCATCAGAAATCTACATGAAAGATGTGTTTAGTGAGATAGTAGTGGCTATGAAATACATTACAAGTAGGAACTTCATTTTCGTTTTCATTTTCAAATGA

Protein sequence

MAAHRLPKNSLYLETPKLLLVSTRTSTTMANVCIACPLNWCLPGLLPTCCMALWVNGAAQSGQESVPEMIITVSTAPCFGSVIVIFASEIYMKDVFSEIVVAMKYITSRNFIFVFIFK
Homology
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BLAST of CmaCh09G006140 vs. NCBI nr
Match: KAG6591718.1 (hypothetical protein SDJN03_14064, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024599.1 hypothetical protein SDJN02_13417 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-09
Identity = 41/67 (61.19%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 1  MAAHRLPKNSLYLETPKLLLVSTRTSTTMANVCIAC--PLNWCLPGLLPTCCMALWVNGA 60
          MAAHRLPKNS     PK  L   + +      C+ C    NWCLPGLLPTCCMALW+NGA
Sbjct: 1  MAAHRLPKNS-----PKAALGFDK-NFDHDGQCLHCLSIYNWCLPGLLPTCCMALWINGA 60

Query: 61 AQSGQES 66
          AQSGQES
Sbjct: 61 AQSGQES 61

The following BLAST results are available for this feature:
BLAST of CmaCh09G006140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G006140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591718.11.7e-0961.19hypothetical protein SDJN03_14064, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh09G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G006140.1CmaCh09G006140.1mRNA