CmaCh09G006020 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G006020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 2821811 .. 2822311 (-)
RNA-Seq ExpressionCmaCh09G006020
SyntenyCmaCh09G006020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGTCGCATCACGACTATAAATATCTCCTTTATTCACGTTTTTAGTTTTCTTTTCGAGTGTCTACAGAGATCAAACATCAAATTACTCTGCCTCTTCGTCGCCCAGTACCAGCGTTTTCGGTCTCCTCCCGCGTGTCATCGCATGCTATCCATTTCTTCTGTTCAGGTTTTCATTCGTTCTCTTACAACTCTTCCTCGGATTTTTGTTCTTCTTGCACTTGCATTGATCTCCATTTTCGTGCTTCTCAACTTACATTCACGCTTACTACGCGCGTCTTTGATATAACTTCCCGCTCTGATTTTATTTCAATACAGTTGAGCTTGTATTCTGCTATTTTTATGCCTTCTCAGTTCGATCACTTCCTGCATCAACATGGAATATCGCTTCGGAAGATAGTTCTCAGATCTGTTTGGTTAGCTTTAATCCGCGAGGAGAAGAAAACTGAAACAAGCGAGAGTCCGAGCTCAACTGTTCCTCTGTGCCTGCGGATTACCAGGTAA

mRNA sequence

CCGTCGCATCACGACTATAAATATCTCCTTTATTCACGTTTTTAGTTTTCTTTTCGAGTGTCTACAGAGATCAAACATCAAATTACTCTGCCTCTTCGTCGCCCAGTACCAGCGTTTTCGGTCTCCTCCCGCGTGTCATCGCATGCTATCCATTTCTTCTGTTCAGTTGAGCTTGTATTCTGCTATTTTTATGCCTTCTCAGTTCGATCACTTCCTGCATCAACATGGAATATCGCTTCGGAAGATAGTTCTCAGATCTGTTTGGTTAGCTTTAATCCGCGAGGAGAAGAAAACTGAAACAAGCGAGAGTCCGAGCTCAACTGTTCCTCTGTGCCTGCGGATTACCAGGTAA

Coding sequence (CDS)

ATGCTATCCATTTCTTCTGTTCAGTTGAGCTTGTATTCTGCTATTTTTATGCCTTCTCAGTTCGATCACTTCCTGCATCAACATGGAATATCGCTTCGGAAGATAGTTCTCAGATCTGTTTGGTTAGCTTTAATCCGCGAGGAGAAGAAAACTGAAACAAGCGAGAGTCCGAGCTCAACTGTTCCTCTGTGCCTGCGGATTACCAGGTAA

Protein sequence

MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSSTVPLCLRITR
Homology
[Close]
BLAST of CmaCh09G006020 vs. ExPASy TrEMBL
Match: A0A6J1IKU1 (uncharacterized protein LOC111476529 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476529 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.8e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60
          MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST
Sbjct: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60

Query: 61 VPLCLRITR 70
          VPLCLRITR
Sbjct: 61 VPLCLRITR 69

[Close]
BLAST of CmaCh09G006020 vs. ExPASy TrEMBL
Match: A0A6J1IM83 (uncharacterized protein LOC111476529 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476529 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60
          MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST
Sbjct: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60

Query: 61 VPLCLRIT 69
          VPLCLRIT
Sbjct: 61 VPLCLRIT 68

[Close]
BLAST of CmaCh09G006020 vs. NCBI nr
Match: XP_022975998.1 (uncharacterized protein LOC111476529 isoform X1 [Cucurbita maxima])

HSP 1 Score: 134.4 bits (337), Expect = 3.7e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60
          MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST
Sbjct: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60

Query: 61 VPLCLRITR 70
          VPLCLRITR
Sbjct: 61 VPLCLRITR 69

[Close]
BLAST of CmaCh09G006020 vs. NCBI nr
Match: XP_022975999.1 (uncharacterized protein LOC111476529 isoform X2 [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60
          MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST
Sbjct: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60

Query: 61 VPLCLRIT 69
          VPLCLRIT
Sbjct: 61 VPLCLRIT 68

[Close]
BLAST of CmaCh09G006020 vs. NCBI nr
Match: KAG7024588.1 (hypothetical protein SDJN02_13406, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 8.8e-22
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 7  VQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSSTVPLCLR 66
          +QLSLYSAIFM SQFDHFLH+HGIS RKIVLRSVWLALIREEKKTE  ESPSSTVPLCLR
Sbjct: 1  MQLSLYSAIFMSSQFDHFLHRHGISPRKIVLRSVWLALIREEKKTEKGESPSSTVPLCLR 60

Query: 67 ITR 70
          ITR
Sbjct: 61 ITR 63

[Close]
BLAST of CmaCh09G006020 vs. NCBI nr
Match: KAG6591706.1 (hypothetical protein SDJN03_14052, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 9.4e-16
Identity = 52/69 (75.36%), Postives = 53/69 (76.81%), Query Frame = 0 

Query: 1  MLSISSVQLSLYSAIFMPSQFDHFLHQHGISLRKIVLRSVWLALIREEKKTETSESPSST 60
          MLSISSV            QFDHFLH+HGIS RKIVLRSVWLAL REEKKTE  ESPSST
Sbjct: 1  MLSISSV------------QFDHFLHRHGISPRKIVLRSVWLALNREEKKTEKGESPSST 57

Query: 61 VPLCLRITR 70
          VPLCLRITR
Sbjct: 61 VPLCLRITR 57

The following BLAST results are available for this feature:
BLAST of CmaCh09G006020 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G006020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IKU11.8e-28100.00uncharacterized protein LOC111476529 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IM836.8e-28100.00uncharacterized protein LOC111476529 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CmaCh09G006020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022975998.13.7e-28100.00uncharacterized protein LOC111476529 isoform X1 [Cucurbita maxima][more]
XP_022975999.11.4e-27100.00uncharacterized protein LOC111476529 isoform X2 [Cucurbita maxima][more]
KAG7024588.18.8e-2290.48hypothetical protein SDJN02_13406, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591706.19.4e-1675.36hypothetical protein SDJN03_14052, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh09G006020 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G006020.1CmaCh09G006020.1mRNA