CmaCh09G005600 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G005600
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr09: 2541681 .. 2542100 (+)
RNA-Seq Expression	CmaCh09G005600
Synteny	CmaCh09G005600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCAATAGATCGAGCGACCTTGCGTCCTCTCGGGAAGCCGAGTTCGCGATAGAGCTTACCGGCATCGTCGAGGCGAAGAACGTGCTCCGGCTGCTTTGAAAGGAAATCCTTCGATTTAAAAAGGAATCTGAAGAAGGAATCTGTTTCAACGATGCGCTCGAAGTAAGAAATGCGATTAGGTTCGGATTGGACAAGCTTGGTTCTAGGGCTTTCTTGCTTCTTGCGTTTCTTCCTGAACTTCTTGGGGAGCTTGGTGATGAGGAAGGAGGTGGAAAATGGGAGTTTCTGGTTGAAGAAGGAAGCAGAGGAATGGCGGAGGGAGTTTGTTAGGGTTAGGGTTTCAGGGGATTTTAGGTTGGTGACGAGAAGGCGCCAAGCCATCAGAATTTTGATTTGGTTGCTTTTGCTGATTAA

mRNA sequence

ATGGCGCTCAATAGATCGAGCGACCTTGCGTCCTCTCGGGAAGCCGAGTTCGCGATAGAGCTTACCGGCATCGTCGAGGCGAAGAACGAATCTGAAGAAGGAATCTGTTTCAACGATGCGCTCGAAGTAAGAAATGCGATTAGGTTCGGATTGGACAAGCTTGGTTCTAGGGCTTTCTTGCTTCTTGCGTTTCTTCCTGAACTTCTTGGGGAGCTTGGTGATGAGGAAGGAGGTGGAAAATGGGAGTTTCTGGTTGAAGAAGGAAGCAGAGGAATGGCGGAGGGAGTTGGTGACGAGAAGGCGCCAAGCCATCAGAATTTTGATTTGGTTGCTTTTGCTGATTAA

Coding sequence (CDS)

ATGGCGCTCAATAGATCGAGCGACCTTGCGTCCTCTCGGGAAGCCGAGTTCGCGATAGAGCTTACCGGCATCGTCGAGGCGAAGAACGAATCTGAAGAAGGAATCTGTTTCAACGATGCGCTCGAAGTAAGAAATGCGATTAGGTTCGGATTGGACAAGCTTGGTTCTAGGGCTTTCTTGCTTCTTGCGTTTCTTCCTGAACTTCTTGGGGAGCTTGGTGATGAGGAAGGAGGTGGAAAATGGGAGTTTCTGGTTGAAGAAGGAAGCAGAGGAATGGCGGAGGGAGTTGGTGACGAGAAGGCGCCAAGCCATCAGAATTTTGATTTGGTTGCTTTTGCTGATTAA

Protein sequence

MALNRSSDLASSREAEFAIELTGIVEAKNESEEGICFNDALEVRNAIRFGLDKLGSRAFLLLAFLPELLGELGDEEGGGKWEFLVEEGSRGMAEGVGDEKAPSHQNFDLVAFAD

Homology

[Close]

BLAST of CmaCh09G005600 vs. ExPASy TrEMBL
Match: A0A0A0LHJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889730 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MALNRSSDLASSREAEFAIELTGIVEAKN--------------ESEEGICFNDALEVRNA 60
           MA NRSSD A+S +A+FAIEL GI+E KN              ESE+GI   DALEVRNA
Sbjct: 133 MAFNRSSDFATSWKAKFAIELAGIIETKNMLRLLGEKILGFKKESEDGISLEDALEVRNA 192

Query: 61  IRFGLDKLGSRAFLLLAFLPELLGELGDEEGGGKWEFLVEE 88
           IRFGLD+LGSRA + LAFLPE LGE GDEEGGG W  + +E
Sbjct: 193 IRFGLDELGSRAIVFLAFLPEFLGEFGDEEGGGVWRRMAKE 233

[Close]

BLAST of CmaCh09G005600 vs. ExPASy TrEMBL
Match: A0A5D3E6P3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006150 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.0e-22
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MALNRSSDLASSREAEFAIELTGIVEAKN--------------ESEEGICFNDALEVRNA 60
           MA NRSSD A+S +A+FAI+L GI+E KN              ESEEGI   DALEVRNA
Sbjct: 1   MAFNRSSDFATSWKAKFAIKLAGIIETKNVLRLLGKEILGLKKESEEGIGLEDALEVRNA 60

Query: 61  IRFGLDKLGSRAFLLLAFLPELLGELGDEEGGGKWEFLVEE 88
           I FGL++LGSRAF+LLAFLPE LG+ GDEEGGG+W  + +E
Sbjct: 61  IGFGLNELGSRAFVLLAFLPEFLGQFGDEEGGGEWRRMAKE 101

[Close]

BLAST of CmaCh09G005600 vs. ExPASy TrEMBL
Match: A0A2P5BNH1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_314870 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.0e-12
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 1   MALNRSSDLASSREAEFAIELTGIVEAKN--------------ESEEGICFNDALEVRNA 60
           MAL+    L+S+ E+E A+EL+GIVEA+N              ESEEG+  +DAL+  ++
Sbjct: 133 MALDEPCHLSSTGESELAVELSGIVEAENVVGLLGEELLGPDEESEEGVTLDDALQRWDS 192

Query: 61  IRFGLDKLGSRAFLLLAFLPELLGELGDEEGGGKWEFLVEEG 89
           I  GLD+LGSRAFLLL  LPE     GDEEGGG  E   EEG
Sbjct: 193 IGLGLDQLGSRAFLLLPLLPEFFRGFGDEEGGG--EMGSEEG 232

[Close]

BLAST of CmaCh09G005600 vs. ExPASy TrEMBL
Match: A0A2P5BF08 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_244610 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.0e-12
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 1   MALNRSSDLASSREAEFAIELTGIVEAKN--------------ESEEGICFNDALEVRNA 60
           MAL+    L+S+ E+E A+EL+GIV+A+N              ESEEG+  +DAL+  ++
Sbjct: 133 MALDEPCHLSSTGESELAVELSGIVKAENVVGLLGEELLGPDEESEEGVTLDDALQCWDS 192

Query: 61  IRFGLDKLGSRAFLLLAFLPELLGELGDEEGGGKWEFLVEEG 89
           I  GLD+LGSRAFLLL  LPE     GDEEGGG  E   EEG
Sbjct: 193 IGLGLDQLGSRAFLLLPLLPEFFRGFGDEEGGG--EMGSEEG 232

[Close]

BLAST of CmaCh09G005600 vs. NCBI nr
Match: KAA0038704.1 (hypothetical protein E6C27_scaffold92G002480 [Cucumis melo var. makuwa] >TYK31316.1 hypothetical protein E5676_scaffold455G006150 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-21
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MALNRSSDLASSREAEFAIELTGIVEAKN--------------ESEEGICFNDALEVRNA 60
           MA NRSSD A+S +A+FAI+L GI+E KN              ESEEGI   DALEVRNA
Sbjct: 1   MAFNRSSDFATSWKAKFAIKLAGIIETKNVLRLLGKEILGLKKESEEGIGLEDALEVRNA 60

Query: 61  IRFGLDKLGSRAFLLLAFLPELLGELGDEEGGGKWEFLVEE 88
           I FGL++LGSRAF+LLAFLPE LG+ GDEEGGG+W  + +E
Sbjct: 61  IGFGLNELGSRAFVLLAFLPEFLGQFGDEEGGGEWRRMAKE 101

[Close]

BLAST of CmaCh09G005600 vs. NCBI nr
Match: PON50357.1 (hypothetical protein TorRG33x02_314870 [Trema orientale])

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-12
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 1   MALNRSSDLASSREAEFAIELTGIVEAKN--------------ESEEGICFNDALEVRNA 60
           MAL+    L+S+ E+E A+EL+GIVEA+N              ESEEG+  +DAL+  ++
Sbjct: 133 MALDEPCHLSSTGESELAVELSGIVEAENVVGLLGEELLGPDEESEEGVTLDDALQRWDS 192

Query: 61  IRFGLDKLGSRAFLLLAFLPELLGELGDEEGGGKWEFLVEEG 89
           I  GLD+LGSRAFLLL  LPE     GDEEGGG  E   EEG
Sbjct: 193 IGLGLDQLGSRAFLLLPLLPEFFRGFGDEEGGG--EMGSEEG 232

[Close]

BLAST of CmaCh09G005600 vs. NCBI nr
Match: PON47377.1 (hypothetical protein PanWU01x14_244610 [Parasponia andersonii])

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-11
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 1   MALNRSSDLASSREAEFAIELTGIVEAKN--------------ESEEGICFNDALEVRNA 60
           MAL+    L+S+ E+E A+EL+GIV+A+N              ESEEG+  +DAL+  ++
Sbjct: 133 MALDEPCHLSSTGESELAVELSGIVKAENVVGLLGEELLGPDEESEEGVTLDDALQCWDS 192

Query: 61  IRFGLDKLGSRAFLLLAFLPELLGELGDEEGGGKWEFLVEEG 89
           I  GLD+LGSRAFLLL  LPE     GDEEGGG  E   EEG
Sbjct: 193 IGLGLDQLGSRAFLLLPLLPEFFRGFGDEEGGG--EMGSEEG 232

The following BLAST results are available for this feature:

BLAST of CmaCh09G005600 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G005600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ5	1.8e-22	61.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889730 PE=4 SV=1	[more]
A0A5D3E6P3	7.0e-22	60.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P5BNH1	3.0e-12	50.00	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_314870 PE=4 SV...	[more]
A0A2P5BF08	5.0e-12	49.02	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_244610 PE...	[more]

BLAST of CmaCh09G005600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038704.1	1.5e-21	60.40	hypothetical protein E6C27_scaffold92G002480 [Cucumis melo var. makuwa] >TYK3131...	[more]
PON50357.1	6.1e-12	50.00	hypothetical protein TorRG33x02_314870 [Trema orientale]	[more]
PON47377.1	1.0e-11	49.02	hypothetical protein PanWU01x14_244610 [Parasponia andersonii]	[more]

BLAST of CmaCh09G005600 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G005600.1	CmaCh09G005600.1	mRNA