CmaCh09G005170 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G005170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptioncryptochrome DASH, chloroplastic/mitochondrial-like
LocationCma_Chr09: 2299560 .. 2302751 (-)
RNA-Seq ExpressionCmaCh09G005170
SyntenyCmaCh09G005170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTACCGTGTGAGGCACCGGATTTATCGCTAGGTGCTGGAGCAGCCGCATCATCCTCACCGTCGGCGGCCTTCGGTGGAGACCTTGCCGGCGAATCGGCAACAACCTTCGGTTTTTTGGCGGGAGGAGCCCTAGCCTTTGACGGAGTCTTAGCGGAAGGAGCCGGTGCCTTTTTAGGAGATCCGACGGGAGAAAACGACGCCGGTGGTGGTGATGATGGAGAGGAGCGAGGTGGCTTGGCATCGATTCCAGGAACCTGAATCGGAGATGAGATCTGAAGAACACAGATATTGTACGGCTGTGCGACGACGGATTTCACCAATCTCGAATCGAACTGAGTTCCTCTCACGGCGGATCCGAACGCGATCTCGCCTTGACCAATCTGCGTAACCTTAATGAAACCTTGCTGATTCCTGGCAGCGCCGCTTGCCTGAAACAGAGTGGTGAGAACGGTAGTATTATCGGAAGACAATCTAGCAAGCTTCTGAGCATCGTAGTAATCGAGAATAACATGAACGCTCAAGATCCTTCTCAGGACGTCCAATGGCTTTCCAGATAGGCCAGAAACGGCGCCGTTGTCGAGGGCGAGGATAGTGATGGTTTTACGGCTGTTAATGTCACCGGCGAGATTTGTTTGTGTGAGGACATCGTTCAAATTATTGAAATCGGGGAACTGGCTTAGGAGCTTAGTGATATTGAAAGCGGAGGCTGCAGAGAAGAGGAGGAAACTCAAAAGCAGGGCGGCGGAAGTGGCTCTGGAATCCATTGTTATTCGGTAATTGTTGATTTTTTTTTTCTTTTTGGTATGATTTTTGTTTTCAATGGGAAACCGATGAGCTTATTGATTTACGATTGAGATTGAGATGGAAAGGGGCTTTTATAGCATGGATTGCTTCAGTTTGTTTGGCTGGGAGTAAAATTCTCACTCGAATTTTCTTTTCCGGGAAAATCTTGAATTAGTTGATAGTTCTTTCAGACTTATTCTTTGAAGCCATAGTGGATCATGCTTTCTTACCGAGGACAAAATCATATCTGCTAACCTAATTTTGATCTTTAGCAACCATTTAATTCTAGTAGTGCTGCCAAGTAAACATACCTGAAAACATGCCAATCATATATTTTGAAGTTAACAAGGGTATCATCGTAGTAATAAGCAGTTTTGTATTGACGAACACAGCGATCACAAGTAGTGAAGCAAATGGACGGGGTGAGAACTGAGAAAGGAAGCAACAAGGATGATGCTCATATTGAAAGAAAAGCTGTGGATGGAAGGATTCTAGCCGGGGATGGTTTCTTCTTCGCCCTCCACCTAAGCTAACTGGAAAAGGCCCAAAGCCAATCACAAAGAACACTGAACGTTCATAGGGTCTTTCTGTATACAGGTGTTGTAGCAGTCCACAGAGTTGATAGGGCATGTTTCGTTTGCTCTTCTTCTTTGGACACGTTTGGCATGGTGCTAGTACCTTGTTCAAAGAAGTTTTTGGTGGGATTGACCCAAAACTTTCACTACTACAATTACCTATATTTGTTTGAATACATAAACTTTTATGCATGATATTTGGAATAAGTTGTGAATACGATTTAGCTATCCTAAATGAATTGAAACAAGAATTTTTGCTAATTAACATACAAATGGGATTCAATTGATTAAAAATAAAATATTGGTAATATGGAAACAAATATGTTTGCTAACTTATATTTTACTAAATTTGAGACAAATATTTTAATGAAAATGTATTGCAAAAATTAGTTAGGGCCCTATAAAGGGATGCCCCATATGCAAAAATGACTTGACATAGAGATAAGATAGTTCATGCCTCATAGTACTAAAACAAAGATATGATCAAGATGTCTCAATTATTAGGCGAGTTTTCCATAAAGTGTCTACGAGATTAGTTAATGACATCTTAAGTCTCGAGATGACACCTGATAAATGGGTTTCCAATGTTATAAGTGTCATGGGTTTTCATGGTGTCGGTAAGTTGTTTTGTAAATGGTTTTCACGGATCAAGTTCCAGATTCGATATGGAACGACTTAGTATTTCTTCATTCATTCTCATCCAATCAAAAACAAAAAAGATTTTTTTTTTATTGTTCAATGGGTTGATTTCTTGATTCATTGTAAGATAATTAAAATCTTTCTTATCGATTTTTTCAATTTGTTGAAAATTATTACCCCCAGTTTTAGTATTTTTATTACTGTTCGTGTCAGTTTCAATATTGATCCAGGCTCTAATATCGGCCTTATTTTGTTGGTACGTTCTTTTGTAAATGGGTTTTCAAGGACAACACTAGGATTGTCATCCAATCATAGAGGCTAGTATACATACTCGTTATCTAATACGGTATGAAAAATAATACCATAGGTAGGAGTCAGTGAGTTCATGCTTGAATAATACTATCTCATTTTAATAGTTTTTAATAATTAATTTTAATTATGGGAAGAAGAGTAAAGAAAGTAGAAATCTCATTGAAAAAAATTATATATTTTCCGCTCATTGCATTACGCAATTGAGCGGCATACATAATTCAAAATTTTTCAATCTTTAAAGCATAACCGCATTGGCTTCTTGAACTCACAGAGCCAGAAACACCGAGATCACAGCCATAACAGCCGCAGCTCCGATGAAGCTACCGCGTGAGGCGCCGGATTCATCGCTAGGTGCTGGAGCAGCCGCATCATCATCACCGTCGGCTGCTTTCGGTGGAGACCTTGCCGGCGAATCGGCAACAACCTTCGGTTTTTTGGCGGGAGGAGCCCTAGCCTTTGACGGAGTCTTAGCGGAAGGAGCCGGTGCCTTTTTAGGTGATCCGACGGGAGAAAACGACGACGGTGGTGGTGGTGTTGGAGAGGAGCGAGGTGGCTTGGCATCGATTCCAGGAACCTGAATCGGAGATGAGATCTGAAGAACACAGATATTGTACGGCTGTGCGACGACGGATTTCACCAATCTCGAATCGAACTGAGTTCCTCTCACGGCGGATCCGAACGCGATCTCACCTTGACCATTCTGCGTAACCTTGATGAAACCTTGCTGATTCCTGGCAGCGCCGCTTGCCTGAAACAGAGTGGTGAGAACAGTAGTATTATCGGAAGACAATCTAGCAAGCTTCTGAGCATCGTAGTAATCGAGAATAACATGAACGCTCAAGATCCTTCTCAGAACGTCCAACGGCTTTCCAGATAG

mRNA sequence

ATGAAGCTACCGTGTGAGGCACCGGATTTATCGCTAGGTGCTGGAGCAGCCGCATCATCCTCACCGTCGGCGGCCTTCGGTGGAGACCTTGCCGGCGAATCGGCAACAACCTTCGGTTTTTTGGCGGGAGGAGCCCTAGCCTTTGACGGAGTCTTAGCGGAAGGAGCCGGTGCCTTTTTAGGAGATCCGACGGGAGAAAACGACGCCGGTGGTGGTGATGATGGAGAGGAGCGAGATATTGTACGGCTGTGCGACGACGGATTTCACCAATCTCGAATCGAACTGAGTTCCTCTCACGGCGGATCCGAACGCGATCTCGCCTTGACCAATCTGCGTAACCTTAATGAAACCTTGCTGATTCCTGGCAGCGCCGCTTGCCTGAAACAGAGTGGTGAGAACGATAGGCCAGAAACGGCGCCGTTGTCGAGGGCGAGGATAGTGATGGTTTTACGGCTGTTAATGTCACCGGCGAGATTTGTTTGTGTGAGGACATCGTTCAAATTATTGAAATCGGGGAACTGGCTTAGGAGCTTAGTGATATTGAAAGCGGAGGCTGCAGAGAAGAGGAGGAAACTCAAAAGCAGGGCGGCGGAAGTGGCTCTGGAATCCATTGTTATTCGAGCCAGAAACACCGAGATCACAGCCATAACAGCCGCAGCTCCGATGAAGCTACCGCGTGAGGCGCCGGATTCATCGCTAGGTGCTGGAGCAGCCGCATCATCATCACCGTCGGCTGCTTTCGGTGGAGACCTTGCCGGCGAATCGGCAACAACCTTCGGTTTTTTGGCGGGAGGAGCCCTAGCCTTTGACGGAGTCTTAGCGGAAGGAGCCGGTGCCTTTTTAGGTGATCCGACGGGAGAAAACGACGACGGTGGTGGTGGTGTTGGAGAGGAGCGAGATATTGTACGGCTGTGCGACGACGGATTTCACCAATCTCGAATCGAACTGAGTTCCTCTCACGGCGGATCCGAACGCGATCTCACCTTGACCATTCTGCGTAACCTTGATGAAACCTTGCTGATTCCTGGCAGCGCCGCTTGCCTGAAACAGAGTGGTGAGAACAGTAGTATTATCGGAAGACAATCTAGCAAGCTTCTGAGCATCGTAGTAATCGAGAATAACATGAACGCTCAAGATCCTTCTCAGAACGTCCAACGGCTTTCCAGATAG

Coding sequence (CDS)

ATGAAGCTACCGTGTGAGGCACCGGATTTATCGCTAGGTGCTGGAGCAGCCGCATCATCCTCACCGTCGGCGGCCTTCGGTGGAGACCTTGCCGGCGAATCGGCAACAACCTTCGGTTTTTTGGCGGGAGGAGCCCTAGCCTTTGACGGAGTCTTAGCGGAAGGAGCCGGTGCCTTTTTAGGAGATCCGACGGGAGAAAACGACGCCGGTGGTGGTGATGATGGAGAGGAGCGAGATATTGTACGGCTGTGCGACGACGGATTTCACCAATCTCGAATCGAACTGAGTTCCTCTCACGGCGGATCCGAACGCGATCTCGCCTTGACCAATCTGCGTAACCTTAATGAAACCTTGCTGATTCCTGGCAGCGCCGCTTGCCTGAAACAGAGTGGTGAGAACGATAGGCCAGAAACGGCGCCGTTGTCGAGGGCGAGGATAGTGATGGTTTTACGGCTGTTAATGTCACCGGCGAGATTTGTTTGTGTGAGGACATCGTTCAAATTATTGAAATCGGGGAACTGGCTTAGGAGCTTAGTGATATTGAAAGCGGAGGCTGCAGAGAAGAGGAGGAAACTCAAAAGCAGGGCGGCGGAAGTGGCTCTGGAATCCATTGTTATTCGAGCCAGAAACACCGAGATCACAGCCATAACAGCCGCAGCTCCGATGAAGCTACCGCGTGAGGCGCCGGATTCATCGCTAGGTGCTGGAGCAGCCGCATCATCATCACCGTCGGCTGCTTTCGGTGGAGACCTTGCCGGCGAATCGGCAACAACCTTCGGTTTTTTGGCGGGAGGAGCCCTAGCCTTTGACGGAGTCTTAGCGGAAGGAGCCGGTGCCTTTTTAGGTGATCCGACGGGAGAAAACGACGACGGTGGTGGTGGTGTTGGAGAGGAGCGAGATATTGTACGGCTGTGCGACGACGGATTTCACCAATCTCGAATCGAACTGAGTTCCTCTCACGGCGGATCCGAACGCGATCTCACCTTGACCATTCTGCGTAACCTTGATGAAACCTTGCTGATTCCTGGCAGCGCCGCTTGCCTGAAACAGAGTGGTGAGAACAGTAGTATTATCGGAAGACAATCTAGCAAGCTTCTGAGCATCGTAGTAATCGAGAATAACATGAACGCTCAAGATCCTTCTCAGAACGTCCAACGGCTTTCCAGATAG

Protein sequence

MKLPCEAPDLSLGAGAAASSSPSAAFGGDLAGESATTFGFLAGGALAFDGVLAEGAGAFLGDPTGENDAGGGDDGEERDIVRLCDDGFHQSRIELSSSHGGSERDLALTNLRNLNETLLIPGSAACLKQSGENDRPETAPLSRARIVMVLRLLMSPARFVCVRTSFKLLKSGNWLRSLVILKAEAAEKRRKLKSRAAEVALESIVIRARNTEITAITAAAPMKLPREAPDSSLGAGAAASSSPSAAFGGDLAGESATTFGFLAGGALAFDGVLAEGAGAFLGDPTGENDDGGGGVGEERDIVRLCDDGFHQSRIELSSSHGGSERDLTLTILRNLDETLLIPGSAACLKQSGENSSIIGRQSSKLLSIVVIENNMNAQDPSQNVQRLSR
Homology
[Close]
BLAST of CmaCh09G005170 vs. ExPASy TrEMBL
Match: A0A6J1IDX9 (cryptochrome DASH, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476213 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-32
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0 

Query: 304 LCDDGFHQSRIELSSSHGGSERDLTLTILRNLDETLLIPGSAACLKQSGENSSIIGRQSS 363
           L DDGFHQSRIELSSSHGGSERDL LT LRNL+ETLLIPGSAACLKQSGEN SIIGRQSS
Sbjct: 275 LXDDGFHQSRIELSSSHGGSERDLALTNLRNLNETLLIPGSAACLKQSGENGSIIGRQSS 334

Query: 364 KLLSIVVIENNMNAQDPSQNVQRLSR 390
           KLLSIVVIENNMNAQDPSQ+VQ LSR
Sbjct: 335 KLLSIVVIENNMNAQDPSQDVQWLSR 360

[Close]
BLAST of CmaCh09G005170 vs. NCBI nr
Match: XP_022975757.1 (cryptochrome DASH, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-32
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0 

Query: 304 LCDDGFHQSRIELSSSHGGSERDLTLTILRNLDETLLIPGSAACLKQSGENSSIIGRQSS 363
           L DDGFHQSRIELSSSHGGSERDL LT LRNL+ETLLIPGSAACLKQSGEN SIIGRQSS
Sbjct: 275 LXDDGFHQSRIELSSSHGGSERDLALTNLRNLNETLLIPGSAACLKQSGENGSIIGRQSS 334

Query: 364 KLLSIVVIENNMNAQDPSQNVQRLSR 390
           KLLSIVVIENNMNAQDPSQ+VQ LSR
Sbjct: 335 KLLSIVVIENNMNAQDPSQDVQWLSR 360

The following BLAST results are available for this feature:
BLAST of CmaCh09G005170 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G005170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IDX91.4e-3291.86cryptochrome DASH, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 ... [more]
BLAST of CmaCh09G005170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022975757.12.8e-3291.86cryptochrome DASH, chloroplastic/mitochondrial-like [Cucurbita maxima][more]
BLAST of CmaCh09G005170 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 182..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G005170.1CmaCh09G005170.1mRNA