CmaCh09G005150 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G005150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein FAM32A
LocationCma_Chr09: 2298108 .. 2298858 (+)
RNA-Seq ExpressionCmaCh09G005150
SyntenyCmaCh09G005150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGAAAATCTCATCGGGATCGTATTCACGAATTCAATCAATATCTAGTCAGTCTGAGTGAACACCATGATATTCCTAAAGTCGAGCCCGGCTAACTTGATCTACATTCTGTTGTTCTTTCTAGTTTTGTTCAATTTCAACGGTTGAATCTCTTATCATTCACAGCAATCATTCACACCAATTTTAGTCTTCCAATTGTCATTCCTTTGGATCATAGGTTAATTTTTTTTTCTCTTATCAATCAAAATTTGTTTCTTTTTCAAGAAAATTCTTTTTTTAAACAATGTTCATGGATTATTGAACTTTATGTTATAATTAATAAATTGGTTGTGATCGTAAAAATTAACTTGTCAAGTCAATTAGTTGGTTCGATAAATATTATACTTTTTGTTTCTGGTTTTCTTAAATTATGTTAAAAAACAAATTTAAACCTTACAACCATTTTTACTATTACGTTAAAAAAACAAATTTATACCTTACAACCACGTTTACCTTTTATGTAATTTTTTTTCCATTGGGTCAGCATTTCTATCGGGAAGACGTAGAATTCCATCTAATTAAATTGAATTTGGGAACGGTCAGAATTTGCTCTCTCGTCATTATAAACCAAGTTCACATTTTGATTCAATATTTACTTTCAACTCAAAGATGTTCCCGAGGCAAGATAAGCATAGAGAACGAGGCAAGACAAGGATGAGAAAGCTATTTGTTTTCATTTCAACTACGGTTTTCAATCTTTATCGCTAG

mRNA sequence

ATGGCTAGAAAATCTCATCGGGATCGTATTCACGAATTCAATCAATATCTAGTCAGTCTGAGTGAACACCATGATATTCCTAAAATGTTCCCGAGGCAAGATAAGCATAGAGAACGAGGCAAGACAAGGATGAGAAAGCTATTTGTTTTCATTTCAACTACGGTTTTCAATCTTTATCGCTAG

Coding sequence (CDS)

ATGGCTAGAAAATCTCATCGGGATCGTATTCACGAATTCAATCAATATCTAGTCAGTCTGAGTGAACACCATGATATTCCTAAAATGTTCCCGAGGCAAGATAAGCATAGAGAACGAGGCAAGACAAGGATGAGAAAGCTATTTGTTTTCATTTCAACTACGGTTTTCAATCTTTATCGCTAG

Protein sequence

MARKSHRDRIHEFNQYLVSLSEHHDIPKMFPRQDKHRERGKTRMRKLFVFISTTVFNLYR
Homology
BLAST of CmaCh09G005150 vs. ExPASy TrEMBL
Match: A0A4D6NV66 (Protein FAM32A OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3178 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.1e-05
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1   MARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           MA KSHRDRIHEFNQYL +L+EH+DIPK+ P
Sbjct: 91  MANKSHRDRIHEFNQYLANLTEHYDIPKVGP 121

BLAST of CmaCh09G005150 vs. ExPASy TrEMBL
Match: A0A4D6NQQ6 (Protein FAM32A OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3176 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.1e-05
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1   MARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           MA KSHRDRIHEFNQYL +L+EH+DIPK+ P
Sbjct: 91  MANKSHRDRIHEFNQYLANLTEHYDIPKVGP 121

BLAST of CmaCh09G005150 vs. ExPASy TrEMBL
Match: A0A6N2M586 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS277224 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.1e-05
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 1   MARKSHRDRIHEFNQYLVSLSEHHDIPKMFPRQDKHR 38
           MA KSHRDRI EFNQYL +LSEH+DIPK+ P  D+ R
Sbjct: 104 MASKSHRDRIQEFNQYLANLSEHYDIPKVGPDYDEKR 140

BLAST of CmaCh09G005150 vs. ExPASy TrEMBL
Match: A0A1S3TZX1 (protein FAM32A-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106760396 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1   MARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           MA KSHRDRIHEFN+YL +LSEH+DIPK+ P
Sbjct: 91  MASKSHRDRIHEFNRYLANLSEHYDIPKVGP 121

BLAST of CmaCh09G005150 vs. ExPASy TrEMBL
Match: A0A0L9UGN2 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g210600 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1  MARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
          MA KSHRDRIHEFN+YL +LSEH+DIPK+ P
Sbjct: 46 MASKSHRDRIHEFNRYLANLSEHYDIPKVGP 76

BLAST of CmaCh09G005150 vs. NCBI nr
Match: KAF7137743.1 (hypothetical protein RHSIM_Rhsim07G0207900 [Rhododendron simsii] >KAF7138310.1 hypothetical protein RHSIM_Rhsim07G0208000 [Rhododendron simsii])

HSP 1 Score: 57.0 bits (136), Expect = 6.5e-05
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 1   MARKSHRDRIHEFNQYLVSLSEHHDIPKMFPRQDKHRERGKT 43
           +A KSHRDRI +FNQYL ++SEH+DIPK  PR+ +  E G+T
Sbjct: 281 IANKSHRDRIQDFNQYLTNMSEHYDIPKAIPREARDFELGET 322

BLAST of CmaCh09G005150 vs. NCBI nr
Match: QCE16163.1 (protein FAM32A [Vigna unguiculata])

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1   MARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           MA KSHRDRIHEFNQYL +L+EH+DIPK+ P
Sbjct: 91  MANKSHRDRIHEFNQYLANLTEHYDIPKVGP 121

BLAST of CmaCh09G005150 vs. NCBI nr
Match: XP_027942337.1 (protein FAM32A-like [Vigna unguiculata] >XP_027942338.1 protein FAM32A-like [Vigna unguiculata] >XP_027942339.1 protein FAM32A-like [Vigna unguiculata] >QCE16165.1 protein FAM32A [Vigna unguiculata] >QCE16167.1 protein FAM32A [Vigna unguiculata])

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 1   MARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           MA KSHRDRIHEFNQYL +L+EH+DIPK+ P
Sbjct: 91  MANKSHRDRIHEFNQYLANLTEHYDIPKVGP 121

BLAST of CmaCh09G005150 vs. NCBI nr
Match: XP_038897245.1 (protein FAM32A-like [Benincasa hispida] >XP_038897246.1 protein FAM32A-like [Benincasa hispida])

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0

Query: 1   MARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           MA KSHRDRI EFNQYL +LSEHHDIPK+ P
Sbjct: 97  MASKSHRDRIQEFNQYLANLSEHHDIPKVGP 127

BLAST of CmaCh09G005150 vs. NCBI nr
Match: XP_023536135.1 (LOW QUALITY PROTEIN: protein FAM32A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 1   MARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           MARKSHRD+IHEFNQYL SL+EH++IPK+ P
Sbjct: 113 MARKSHRDQIHEFNQYLTSLNEHYNIPKVGP 143

BLAST of CmaCh09G005150 vs. TAIR 10
Match: AT1G16810.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 395 Blast hits to 394 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 91; Plants - 65; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 2   ARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           A KSHR+RI +FNQYL ++SEH+DIPK+ P
Sbjct: 114 ANKSHRNRIEDFNQYLANMSEHYDIPKVGP 143

BLAST of CmaCh09G005150 vs. TAIR 10
Match: AT1G16810.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 2   ARKSHRDRIHEFNQYLVSLSEHHDIPKMFP 32
           A KSHR+RI +FNQYL ++SEH+DIPK+ P
Sbjct: 114 ANKSHRNRIEDFNQYLANMSEHYDIPKVGP 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4D6NV669.1e-0577.42Protein FAM32A OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3178 PE=4 SV=1[more]
A0A4D6NQQ69.1e-0577.42Protein FAM32A OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3176 PE=4 SV=1[more]
A0A6N2M5869.1e-0570.27Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS277224 PE=4 SV=... [more]
A0A1S3TZX11.6e-0477.42protein FAM32A-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106760396 PE=4 S... [more]
A0A0L9UGN21.6e-0477.42Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g210600 PE... [more]
Match NameE-valueIdentityDescription
KAF7137743.16.5e-0559.52hypothetical protein RHSIM_Rhsim07G0207900 [Rhododendron simsii] >KAF7138310.1 h... [more]
QCE16163.11.9e-0477.42protein FAM32A [Vigna unguiculata][more]
XP_027942337.11.9e-0477.42protein FAM32A-like [Vigna unguiculata] >XP_027942338.1 protein FAM32A-like [Vig... [more]
XP_038897245.11.9e-0480.65protein FAM32A-like [Benincasa hispida] >XP_038897246.1 protein FAM32A-like [Ben... [more]
XP_023536135.12.5e-0477.42LOW QUALITY PROTEIN: protein FAM32A-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT1G16810.13.7e-0666.67unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754... [more]
AT1G16810.23.7e-0666.67unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G005150.1CmaCh09G005150.1mRNA