CmaCh09G004460 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G004460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 1956221 .. 1956685 (+)
RNA-Seq ExpressionCmaCh09G004460
SyntenyCmaCh09G004460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATGATTGTGACATGTATATGGTGATTGTTCCTTTGTGGACGAAGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACAACTTTTATAATGCTTATGCTGAGGTACTGGGCTTTGGCAGCAGAGTTAGCAATTCATGGTTTCGATCCAAGAGAAAAGAGCGATATAGAGCTAAACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGTTTAAAACACTTTTTGGTGGATATGTACATAAATACACATCTTTTAACACAATTGTTGATAAGTATGATCTTGTCCACCACAGGAAATATTATAAAGAAGCAGTAGCAGATCTTGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAGTTTTTGA

mRNA sequence

ATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATGATTGTGACATGTATATGGTGATTGTTCCTTTGTGGACGAAGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACAACTTTTATAATGCTTATGCTGAGGTACTGGGCTTTGGCAGCAGAGTTAGCAATTCATGGTTTCGATCCAAGAGAAAAGAGCGATATAGAGCTAAACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGAAATATTATAAAGAAGCAGTAGCAGATCTTGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAGTTTTTGA

Coding sequence (CDS)

ATGGAGGAAGTTTGTCTTAACAGCCAGCCTGTCTTTGATGATTGTGACATGTATATGGTGATTGTTCCTTTGTGGACGAAGATGAATCTATGGAAGCACAGTCAAAGAAGAATCTTCCACGGCCAACTGTGGGTTCGGAATATGATTCTTTTGATGAGGCATACAACTTTTATAATGCTTATGCTGAGGTACTGGGCTTTGGCAGCAGAGTTAGCAATTCATGGTTTCGATCCAAGAGAAAAGAGCGATATAGAGCTAAACTTATCATTTGCAGGAATGATCTCTATCCATGCATATGAGAGGAAATATTATAAAGAAGCAGTAGCAGATCTTGAGTCGAGAAATTTAAGCGTCGAGTTGAAAAGGAGATGTAGTTTTTGA

Protein sequence

MEEVCLNSQPVFDDCDMYMVIVPLWTKMNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRYWALAAELAIHGFDPREKSDIELNLSFAGMISIHAYERKYYKEAVADLESRNLSVELKRRCSF
Homology
[Close]
BLAST of CmaCh09G004460 vs. ExPASy TrEMBL
Match: A0A0A0LDN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G876570 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 0 

Query: 18  YMVIVPLWTKMNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRYWALAAELAIHGFD 77
           +MV++PLWT  N  KHSQ RI H QLWV N+IL MR  TF M MLR WALA+E  IHGF 
Sbjct: 36  WMVMIPLWTMTNPGKHSQGRILHFQLWVWNLILSMRLMTFTMFMLRMWALASESVIHGFV 95

Query: 78  PREKSDIELNLSFA 92
            R+K+DIELNL+ A
Sbjct: 96  LRKKNDIELNLAAA 109

[Close]
BLAST of CmaCh09G004460 vs. NCBI nr
Match: KAG7024450.1 (hypothetical protein SDJN02_13265 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 

Query: 28  MNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRYWALAAELAIHGFDPREKSDIELN 87
           MNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRYWALAAE AIHGFD REKSDIEL+
Sbjct: 1   MNLWKHSQRRIFHGQLWVRNMILLMRHTTFIMLMLRYWALAAESAIHGFDLREKSDIELH 60

Query: 88  LSFAGMISIHAYER 102
           LSFAGMISIHAYER
Sbjct: 61  LSFAGMISIHAYER 74

[Close]
BLAST of CmaCh09G004460 vs. NCBI nr
Match: KAG6591561.1 (hypothetical protein SDJN03_13907, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 5.0e-23
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 0 

Query: 43  LWVRNMILLMRHTTFIMLMLRYWALAAELAIHGFDPREKSDIELNLSFAGMISIHAYERK 102
           LW R  +L    +  I+  + Y ALAAE AIHGFD REKSDIEL+LSFAGMISIHAYERK
Sbjct: 43  LW-RKFVLTASLSLMIVTCIWYSALAAESAIHGFDLREKSDIELHLSFAGMISIHAYERK 102

Query: 103 YYKEAVADLESRNLSVELKRRCSF 127
           YYKEAVADLESRNLSVELKRRCSF
Sbjct: 103 YYKEAVADLESRNLSVELKRRCSF 125

The following BLAST results are available for this feature:
BLAST of CmaCh09G004460 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G004460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDN71.1e-1563.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G876570 PE=4 SV=1[more]
BLAST of CmaCh09G004460 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024450.11.3e-3195.95hypothetical protein SDJN02_13265 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6591561.15.0e-2376.19hypothetical protein SDJN03_13907, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh09G004460 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G004460.1CmaCh09G004460.1mRNA