CmaCh09G004310 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G004310
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 1880281 .. 1880562 (+)
RNA-Seq ExpressionCmaCh09G004310
SyntenyCmaCh09G004310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGACTTGTTTCCAACAAAATCATGTTCTCAACACTTTGCTGCAGCAGCATATAAACCCCATACTGATTATTTTACGAGAATTGAAGGTATTCATTTTAAGCTTGCAAAACGAACGTACGTAGTTATTGCTTTGACCAAAGAAGTTAGGGATGAGAAAACGGGACGAGGACAGGGATGGGGATGGGGATGGAGGAATATATGCTGTGTCGCGGGGGCACACGTAAAGATCGAAAACGTGCTTTCGACTTAA

mRNA sequence

ATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGACTTGTTTCCAACAAAATCATGTTCTCAACACTTTGCTGCAGCAGCATATAAACCCCATACTGATTATTTTACGAGAATTGAAGGTATTCATTTTAAGCTTGCAAAACGAACGTACGTAGTTATTGCTTTGACCAAAGAAGTTAGGGATGAGAAAACGGGACGAGGACAGGGATGGGGATGGGGATGGAGGAATATATGCTGTGTCGCGGGGGCACACGTAAAGATCGAAAACGTGCTTTCGACTTAA

Coding sequence (CDS)

ATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGACTTGTTTCCAACAAAATCATGTTCTCAACACTTTGCTGCAGCAGCATATAAACCCCATACTGATTATTTTACGAGAATTGAAGGTATTCATTTTAAGCTTGCAAAACGAACGTACGTAGTTATTGCTTTGACCAAAGAAGTTAGGGATGAGAAAACGGGACGAGGACAGGGATGGGGATGGGGATGGAGGAATATATGCTGTGTCGCGGGGGCACACGTAAAGATCGAAAACGTGCTTTCGACTTAA

Protein sequence

MQVKTAATVSNDLFPTKSCSQHFAAAAYKPHTDYFTRIEGIHFKLAKRTYVVIALTKEVRDEKTGRGQGWGWGWRNICCVAGAHVKIENVLST
Homology
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BLAST of CmaCh09G004310 vs. NCBI nr
Match: KAG7024437.1 (hypothetical protein SDJN02_13252, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.8 bits (447), Expect = 8.7e-41
Identity = 87/93 (93.55%), Postives = 88/93 (94.62%), Query Frame = 0 

Query: 1   MQVKTAATVSNDLFPTKSCSQHFAAAAYKPHTDYFTRIEGIHFKLAKRTYVVIALTKEVR 60
           MQVKTAATVSNDLFPTKSCSQHFAAAAYKPHTDYFT IEGIHFKLAK TYVVIALTKEVR
Sbjct: 485 MQVKTAATVSNDLFPTKSCSQHFAAAAYKPHTDYFTSIEGIHFKLAKPTYVVIALTKEVR 544

Query: 61  DEKTGRGQGWGWGWRNICCVAGAHVKIENVLST 94
           DEKTGRG+  G GWRNICCVAGAHVKIENVLST
Sbjct: 545 DEKTGRGR--GQGWRNICCVAGAHVKIENVLST 575

The following BLAST results are available for this feature:
BLAST of CmaCh09G004310 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G004310 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G004310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024437.18.7e-4193.55hypothetical protein SDJN02_13252, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh09G004310 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G004310.1CmaCh09G004310.1mRNA