CmaCh09G003530 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G003530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA-binding protein 2-like isoform X1
Location	Cma_Chr09: 1459408 .. 1462290 (-)
RNA-Seq Expression	CmaCh09G003530
Synteny	CmaCh09G003530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAACCTGCACGACCTTCATATTGATGATACAGTCTCAATGAATGTAAAACCCTACGAATCATATTTAAGAGGCGAACCAAAATAGCTATAACTGATATGATTCATAATATTATATTGTTCTAGATCAATTATAACGATATAAAATTTTATTTTATTTATTTATTTATTCCCATTAAAACATAGCTGTGTATGAAAGAGAAACACTAAAAAAGTTAATTTAATAAATAGTAATAATGGTATTAATACTCCATATAACTATAAATAATGGTTAATTTTTATTTATATTCTAAAGCTTTTTTTTATTATTATTATTTTTATTTTTTTTCTGAAAACAAAAATAAATTTTGTAAAGGATATAAGACATAATTGAAACAAATTTAATGTTGGAAGTATTTTGGCCAATTTAAGCATTTACGGAGAACCGGAGAAAGACGAGACCGCGGGAAGGTCGCAGTTGCAGCGGAAGCAGAGCAGACGGCCAAGCCATGGAAGAGGATGCGTATACCAGATAGCAGATAGAGGTACTCATCTCATATGGAACCCTAGTTCAACGACCTCTTGTATTTCTTCCATTTACTCGATCTTGGAACAAGATTTCATTGTTTAGAATCACTGCTACACTTGATCGGAAGAATATTGGCAGCATGGAACGAAAAGTAGCTTAGGTGAACGAAATCGAGCTTAAAGAGAAAAATTAAAGTAGAATAAGCTTTTGGCCAGTTGCATTTGTACTGAATATAGGCGAAAAGATAAACCATCAACTTTCTGGGAAATCGTTGCGTTAGAGGATGTCTAGATGAGGTGCCATAGGGTTGATCATGTGAATTGTTCCTTGTACTGCTCGATGACTGTAGTGTATTATTTTTCTTGGAAAATTTTTATGATACCGTAGTATCGGGCTGTTGAATCATTTATATGGAGCAATTGCAAGGCTAGTTTCTGTTGAATCATTTCAGCTGCTGTATTTTAGGATACGAGTGGTTCAACCTAGTCATTCCATAACATTCCCTTGTTCATTGCTTATTCACACCAATATTTAATTCTATTCACGTACCTCGTTTTTGGGTCTGGCTTGGAAGAATCTAGGGCTAATTGATTTTCCTTAAAGAAAGATGGGAAATGGAAGTCTCCATTCTTCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACCTACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTGCTGAAACATGTAAGAATTTTATCTTTAGCATAAAATATATTTATTTAATGAGTGCTTTACATGTCTTGTAACTGTCGAAAAATTCATCAGGACCGGGAGCTTATGGATATACTGAAGTAGGAACCATTAGTAAATACCCGGAACCAGTTATTGGGGGCGGTTTGAGTGCAAAAGGCTACAGACCTCCATTTGAAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTGATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCGTATCCTTTTGCCTCATGTGCTTACTTTTGTTACTATTTCTCCTGTCTCTCCAACTTTATTTACACCCTGTGCTTTAACTTTCCTAGGGTGTAGGCAGCATCCCAAACAAGTTGAGTTTCTGTTAAAACTTAAAACAACCATTGTTGTCTTCTTGATGTCACTTTAGTCGAAGAAAATAGGACGTAAATTGCAATAGACAGAACTATTGTCACGTAGTCATGTTTTGTCATATCTTAACTTCGAATTGTAAGATCTTTTCCGCCCATTTATTGGCTATGAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGGTAAGTTATCAGGCTCCCTTTACTTTAAAATTTAAACTATGGAGGCATGTTTTACTACGATAAGGCCTTCATTGGCAATTAACAACTGCATGCACTCTATGGTGGAGGTCCTGTTTATAATTATTGTGTCCTTATGCTCAGATTTTATGGTATTATTTTTCTTCTGTCATATGTTCTTAAACGTCATTGTACATTCCTTCTGTTATAACGAGTAATTGAACTGCAGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCAGTGAAGCAAGATATGCCCAGGCTGCAATGGAAGCTCTTCAAGGTATTGTATGATTCGTTCCTCTCTGTACGGGTGATAATCTAAGTCAAAACGTAAAGATAAATGCTTGAAGAAACTGAAAACGTGCAGCAGTATTTAGGGATTCTTATTGTGTATTGCTTGGTACATAAAATTTATGATCTAGTATTTAGCCAAGTATATCTGGCACTACAATTGCGCCGGATTCTAAGACAAAGGATGACCAAACTGTATGATAAACCAAAGGTTTCAGGTACTTGGGCACTCCTGAATCACTCACCAAAATAATGCCTCCGTTCTCCTTTCCCACTACCTCTTTAACTAATGATGCCATTGACATTATTTATGAACGGACACTCGATCAATGAATTTCTCTAAATGAACTAGGACAACTCTTAAAATGCTTCATATAAGTTTAGATAATCTGATGTATGATTTTCTGCTGGTTACAAGTTCGATGACAAAAAGCCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGACGATGA

mRNA sequence

ATGCTGAACCTGCACGACCTTCATATTGATGATACAGTCTCAATGAATTATTTTGGCCAATTTAAGCATTTACGGAGAACCGGAGAAAGACGAGACCGCGGGAAGGTCGCAGTTGCAGCGGAAGCAGAGCAGACGGCCAAGCCATGGAAGAGGATGCATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACCTACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTGCTGAAACATGACCGGGAGCTTATGGATATACTGAATAAATACCCGGAACCAGTTATTGGGGGCGGTTTGAGTGCAAAAGGCTACAGACCTCCATTTGAAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTGATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAATCTTTTCCGCCCATTTATTGGCTATGAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCAGTGAAGCAAGATATGCCCAGGCTGCAATGGAAGCTCTTCAAGCCAAGTATATCTGGCACTACAATTGCGCCGGATTCTAAGACAAAGGATGACCAAACTTTCGATGACAAAAAGCCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGACGATGA

Coding sequence (CDS)

ATGCTGAACCTGCACGACCTTCATATTGATGATACAGTCTCAATGAATTATTTTGGCCAATTTAAGCATTTACGGAGAACCGGAGAAAGACGAGACCGCGGGAAGGTCGCAGTTGCAGCGGAAGCAGAGCAGACGGCCAAGCCATGGAAGAGGATGCATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACCTACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTGCTGAAACATGACCGGGAGCTTATGGATATACTGAATAAATACCCGGAACCAGTTATTGGGGGCGGTTTGAGTGCAAAAGGCTACAGACCTCCATTTGAAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTGATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAATCTTTTCCGCCCATTTATTGGCTATGAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCAGTGAAGCAAGATATGCCCAGGCTGCAATGGAAGCTCTTCAAGCCAAGTATATCTGGCACTACAATTGCGCCGGATTCTAAGACAAAGGATGACCAAACTTTCGATGACAAAAAGCCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGACGATGA

Protein sequence

MLNLHDLHIDDTVSMNYFGQFKHLRRTGERRDRGKVAVAAEAEQTAKPWKRMHLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELMDILNKYPEPVIGGGLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDGR

Homology

[Close]

BLAST of CmaCh09G003530 vs. ExPASy TrEMBL
Match: A0A5D3D938 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001990 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.9e-59
Identity = 138/245 (56.33%), Postives = 157/245 (64.08%), Query Frame = 0


Query: 70  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI-- 129
           A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D +  D   +        D+  
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGG 72

Query: 130 LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLG- 189
            +KYPEPVIGG   G+SA GY  PF DSLASQRQDIAVGSSPG+M  A+IGHERANSL  
Sbjct: 73  NSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSI 132

Query: 190 LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYV 249
           +RTA+CDP S RESNI+FVDGLPTDCTRRE+            LF       +IR    V
Sbjct: 133 IRTAECDPTSLRESNILFVDGLPTDCTRREV----------GHLFRPFMGYKDIR----V 192

Query: 250 LSSSVKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLP 301
           +    ++   +     F   +         +      FDDKKPDSPALKIQFAHFPFRLP
Sbjct: 193 VHKEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLP 243

[Close]

BLAST of CmaCh09G003530 vs. ExPASy TrEMBL
Match: A0A1S3BU06 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.9e-59
Identity = 138/245 (56.33%), Postives = 157/245 (64.08%), Query Frame = 0


Query: 70  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI-- 129
           A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D +  D   +        D+  
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGG 72

Query: 130 LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLG- 189
            +KYPEPVIGG   G+SA GY  PF DSLASQRQDIAVGSSPG+M  A+IGHERANSL  
Sbjct: 73  NSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSI 132

Query: 190 LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYV 249
           +RTA+CDP S RESNI+FVDGLPTDCTRRE+            LF       +IR    V
Sbjct: 133 IRTAECDPTSLRESNILFVDGLPTDCTRREV----------GHLFRPFMGYKDIR----V 192

Query: 250 LSSSVKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLP 301
           +    ++   +     F   +         +      FDDKKPDSPALKIQFAHFPFRLP
Sbjct: 193 VHKEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLP 243

[Close]

BLAST of CmaCh09G003530 vs. ExPASy TrEMBL
Match: A0A1S3BUL5 (RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 136/241 (56.43%), Postives = 155/241 (64.32%), Query Frame = 0


Query: 74  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI--LNKY 133
           GSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D +  D   +        D+   +KY
Sbjct: 16  GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGGNSKY 75

Query: 134 PEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLG-LRTA 193
           PEPVIGG   G+SA GY  PF DSLASQRQDIAVGSSPG+M  A+IGHERANSL  +RTA
Sbjct: 76  PEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSIIRTA 135

Query: 194 DCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSS 253
           +CDP S RESNI+FVDGLPTDCTRRE+            LF       +IR    V+   
Sbjct: 136 ECDPTSLRESNILFVDGLPTDCTRREV----------GHLFRPFMGYKDIR----VVHKE 195

Query: 254 VKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHD 301
            ++   +     F   +         +      FDDKKPDSPALKIQFAHFPFRLPSNHD
Sbjct: 196 PRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHD 242

[Close]

BLAST of CmaCh09G003530 vs. ExPASy TrEMBL
Match: A0A6J1FCR4 (nuclear speckle RNA-binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442922 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 141/249 (56.63%), Postives = 153/249 (61.45%), Query Frame = 0


Query: 54  LTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHD 113
           LTDSANSILQANVQLLAHAAG     G   Y+E                           
Sbjct: 20  LTDSANSILQANVQLLAHAAGRPVAYG---YTE--------------------------- 79

Query: 114 RELMDILNKYPEPVIGGGLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANS 173
              +  ++ YPEPVIGGGLSAKGYR PFEDSLASQRQDIAVGSSPGLMDMA+IGHERANS
Sbjct: 80  ---VGTISNYPEPVIGGGLSAKGYRSPFEDSLASQRQDIAVGSSPGLMDMADIGHERANS 139

Query: 174 LGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRY 233
           LGLRTADCDPISSRESNIIFVDGLPTDCTRRE+            LF       +IR   
Sbjct: 140 LGLRTADCDPISSRESNIIFVDGLPTDCTRREV----------GHLFRPFIGYKDIR--- 199

Query: 234 YVLSSSVKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFR 293
            V+    ++   +     F   I         +      FDDKK DSPALKIQFAHFPFR
Sbjct: 200 -VVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPALKIQFAHFPFR 221

Query: 294 LPSNHDDGR 303
           LPSNHDDGR
Sbjct: 260 LPSNHDDGR 221

[Close]

BLAST of CmaCh09G003530 vs. ExPASy TrEMBL
Match: A0A6J1CBB3 (uncharacterized protein LOC111009933 OS=Momordica charantia OX=3673 GN=LOC111009933 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.7e-57
Identity = 134/243 (55.14%), Postives = 157/243 (64.61%), Query Frame = 0


Query: 74  GSVARSGLSTYSEAPPL-TSYPNSTSIDQWYIPPDDLLKHDR----------ELMDILNK 133
           GSVARS  STYSEAPPL TSYPN+ SIDQW+ PPD L K             ++ DI N 
Sbjct: 16  GSVARSSHSTYSEAPPLSTSYPNAASIDQWHTPPDYLQKDTNSSGTGAYGYADIGDIRN- 75

Query: 134 YPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTA 193
           YPEPVIGG   G++AKGY  PFEDSLASQRQ+IAVGSSPGL+ MA++GHERA+SLGLR A
Sbjct: 76  YPEPVIGGVTSGVTAKGYTSPFEDSLASQRQEIAVGSSPGLLGMADMGHERASSLGLRNA 135

Query: 194 DCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSS 253
           +C PIS+RESNI+FVDGLPTDCTRRE+            LF       +IR    V+   
Sbjct: 136 ECVPISTRESNILFVDGLPTDCTRREV----------GHLFRPFIGYKDIR----VVHKE 195

Query: 254 VKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHD 303
            ++   +     F   +                FDDKKPDSPALK+ FAHFPFRLPSNH+
Sbjct: 196 PRRSGDKAAVLCFVEFVEAKCAWAAMAALQGYKFDDKKPDSPALKVHFAHFPFRLPSNHE 243

[Close]

BLAST of CmaCh09G003530 vs. NCBI nr
Match: KAG6591477.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-70
Identity = 159/249 (63.86%), Postives = 166/249 (66.67%), Query Frame = 0


Query: 54  LTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHD 113
           LTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDD  KHD
Sbjct: 20  LTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD 79

Query: 114 RELMDILNKYPEPVIGGGLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANS 173
           R                            DSLASQRQDIAVGSSPGLMDMAEIGHERANS
Sbjct: 80  R----------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANS 139

Query: 174 LGLRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRY 233
           LGLRTADCDPISSRESNIIFVDGLPTDCTRRE+            LF       +IR   
Sbjct: 140 LGLRTADCDPISSRESNIIFVDGLPTDCTRREV----------GHLFRPFIGYKDIR--- 199

Query: 234 YVLSSSVKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFR 293
            V+    ++   +     F   I         +      FDDKKPDSPALKIQFAHFPFR
Sbjct: 200 -VVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 226

Query: 294 LPSNHDDGR 303
           LPSNHDDGR
Sbjct: 260 LPSNHDDGR 226

[Close]

BLAST of CmaCh09G003530 vs. NCBI nr
Match: XP_038896813.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 243.0 bits (619), Expect = 3.2e-60
Identity = 141/245 (57.55%), Postives = 158/245 (64.49%), Query Frame = 0


Query: 70  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDREL-------MDI--L 129
           A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD L K    +        D+  +
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIGPGAYGYTDVGGI 72

Query: 130 NKYPEPVIG---GGLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLR 189
           + YPEPVIG    G SAKGY  PFEDSLASQRQDIAVGSSPG+M MA+  HERANSL LR
Sbjct: 73  SNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMADTAHERANSLSLR 132

Query: 190 TADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLS 249
           TA+ DP SSRESNI+FVDGLPTDCTRRE+            LF       +IR    V+ 
Sbjct: 133 TAEGDPNSSRESNILFVDGLPTDCTRREV----------GHLFRPFIGYKDIR----VVH 192

Query: 250 SSVKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSN 303
              ++   +     F   I         +      FDDKKPDSP+LKIQFAHFPFRLPSN
Sbjct: 193 KEPRRSGDKAMVLCFVEFIEARYARTAMEALQGYKFDDKKPDSPSLKIQFAHFPFRLPSN 243

[Close]

BLAST of CmaCh09G003530 vs. NCBI nr
Match: XP_038896812.1 (RNA-binding protein 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-59
Identity = 141/245 (57.55%), Postives = 161/245 (65.71%), Query Frame = 0


Query: 70  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDREL-------MDI--L 129
           A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD L K    +        D+  +
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIGPGAYGYTDVGGI 72

Query: 130 NKYPEPVIG---GGLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLR 189
           + YPEPVIG    G SAKGY  PFEDSLASQRQDIAVGSSPG+M MA+  HERANSL LR
Sbjct: 73  SNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMADTAHERANSLSLR 132

Query: 190 TADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLS 249
           TA+ DP SSRESNI+FVDGLPTDCTRRE+            LF       +IR+ +    
Sbjct: 133 TAEGDPNSSRESNILFVDGLPTDCTRREV----------GHLFRPFIGYKDIRVVHKEPR 192

Query: 250 SSVKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSN 303
            S  + M     +  +   + T +      +    FDDKKPDSP+LKIQFAHFPFRLPSN
Sbjct: 193 RSGDKAMVLCFVEFIEARYARTAM---EALQAGYKFDDKKPDSPSLKIQFAHFPFRLPSN 244

[Close]

BLAST of CmaCh09G003530 vs. NCBI nr
Match: XP_038896814.1 (nuclear speckle RNA-binding protein B-like isoform X3 [Benincasa hispida])

HSP 1 Score: 238.8 bits (608), Expect = 6.1e-59
Identity = 139/241 (57.68%), Postives = 159/241 (65.98%), Query Frame = 0


Query: 74  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDREL-------MDI--LNKYP 133
           GSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD L K    +        D+  ++ YP
Sbjct: 16  GSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIGPGAYGYTDVGGISNYP 75

Query: 134 EPVIG---GGLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADC 193
           EPVIG    G SAKGY  PFEDSLASQRQDIAVGSSPG+M MA+  HERANSL LRTA+ 
Sbjct: 76  EPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMADTAHERANSLSLRTAEG 135

Query: 194 DPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYVLSSSVK 253
           DP SSRESNI+FVDGLPTDCTRRE+            LF       +IR+ +     S  
Sbjct: 136 DPNSSRESNILFVDGLPTDCTRREV----------GHLFRPFIGYKDIRVVHKEPRRSGD 195

Query: 254 QDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLPSNHDDG 303
           + M     +  +   + T +      +    FDDKKPDSP+LKIQFAHFPFRLPSNHDD 
Sbjct: 196 KAMVLCFVEFIEARYARTAM---EALQAGYKFDDKKPDSPSLKIQFAHFPFRLPSNHDDR 243

[Close]

BLAST of CmaCh09G003530 vs. NCBI nr
Match: XP_008452748.1 (PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo] >KAA0064514.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa] >TYK20076.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 6.1e-59
Identity = 138/245 (56.33%), Postives = 157/245 (64.08%), Query Frame = 0


Query: 70  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDLLKHDRELM--------DI-- 129
           A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D +  D   +        D+  
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGG 72

Query: 130 LNKYPEPVIGG---GLSAKGYRPPFEDSLASQRQDIAVGSSPGLMDMAEIGHERANSLG- 189
            +KYPEPVIGG   G+SA GY  PF DSLASQRQDIAVGSSPG+M  A+IGHERANSL  
Sbjct: 73  NSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSI 132

Query: 190 LRTADCDPISSRESNIIFVDGLPTDCTRREIFSAHLLAMKTSELFTRSPDGVEIRLRYYV 249
           +RTA+CDP S RESNI+FVDGLPTDCTRRE+            LF       +IR    V
Sbjct: 133 IRTAECDPTSLRESNILFVDGLPTDCTRREV----------GHLFRPFMGYKDIR----V 192

Query: 250 LSSSVKQDMPRLQWKLFKPSISGTTIAPDSKTKDDQTFDDKKPDSPALKIQFAHFPFRLP 301
           +    ++   +     F   +         +      FDDKKPDSPALKIQFAHFPFRLP
Sbjct: 193 VHKEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLP 243

The following BLAST results are available for this feature:

BLAST of CmaCh09G003530 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G003530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D938	2.9e-59	56.33	RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BU06	2.9e-59	56.33	RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE...	[more]
A0A1S3BUL5	1.1e-58	56.43	RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE...	[more]
A0A6J1FCR4	2.5e-58	56.63	nuclear speckle RNA-binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1CBB3	2.7e-57	55.14	uncharacterized protein LOC111009933 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]

BLAST of CmaCh09G003530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591477.1	1.2e-70	63.86	RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038896813.1	3.2e-60	57.55	RNA-binding protein 2-like isoform X2 [Benincasa hispida]	[more]
XP_038896812.1	1.2e-59	57.55	RNA-binding protein 2-like isoform X1 [Benincasa hispida]	[more]
XP_038896814.1	6.1e-59	57.68	nuclear speckle RNA-binding protein B-like isoform X3 [Benincasa hispida]	[more]
XP_008452748.1	6.1e-59	56.33	PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo] >KAA0064514.1 RN...	[more]

BLAST of CmaCh09G003530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 78..212
None	No IPR available	PANTHER	PTHR10501:SF41	PROTEIN COUCH POTATO	coord: 78..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G003530.1	CmaCh09G003530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding