CmaCh09G002840 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G002840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S7, chloroplastic
LocationCma_Chr09: 1164045 .. 1166103 (-)
RNA-Seq ExpressionCmaCh09G002840
SyntenyCmaCh09G002840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGCGTATGTAGTTGTAGAATTTACTTTCATTTCATGAACTGAAATGTAATTCACCGTTCTGTAGGTTTTAAAACGTGTTTATTAAGGATACGTTTATCGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGGAAAGGCAAGACGTGTAAGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATNNNNNNNNNNGAATTTCATAGTAATCGAAATACATGTCCTACCGCGACAGAATTTGTAACTTGCTATCCTCTTGCCTAGCAGGCAAAGATTTACCTCCGTGGAAAGGATGATTCATTCCGATCGACATGAGAGTCCAACTACATTGCATTGCCAGAATCCATGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCATGTTACAATCCTCTTCCCGCCGAGCCCCCTTTCTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACTGAGCCGAGATCACTAACTAATACTAATCTAATACTAATAGAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCTTTACGCAATCAATCGGATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGGAATTTTCCTTGGGAGGTATCGGGAAGGAATTGGAATGTAATAATATCGATTCATACAGATACAGAAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAGAGGAAAAAAACGAAGATTTCACATAGTACTTTTGATCGAAAAATCAATCTGATTTATTTCGTACCTTTCGCTCAATGAAAAAATGGGTCAGATTCTACAGGATCAAACCTATGGGACTTAAGGAATGATCGAAGGGAATAAAAAAAGAAAAAAAAAAAGAGAGGGAAAAATAAGTAAATAAAAATGACGTAGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTGGAGCAGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTCCTTGACTTTGTCCGTGTCAACAAACAATTCGAAATGCCTCGACTTTTTTAGAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAA

mRNA sequence

ATGTGTGCGTATGATACGTTTATCGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGGAAAGGCAAGACGTGTAAGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAAGGTTGACCTCCTTGCTTCTCTCATGTTACAATCCTCTTCCCGCCGAGCCCCCTTTCTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAA

Coding sequence (CDS)

ATGTGTGCGTATGATACGTTTATCGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGGAAAGGCAAGACGTGTAAGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAAGGTTGACCTCCTTGCTTCTCTCATGTTACAATCCTCTTCCCGCCGAGCCCCCTTTCTCCTCGATCCACAGAGACAAAATGGAGGACTGGTGCCAACAAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAA

Protein sequence

MCAYDTFIETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELRLTSLLLSCYNPLPAEPPFSSIHRDKMEDWCQQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSPSQIVMIRSTSFYTISETQGLNRMDM
Homology
[Close]
BLAST of CmaCh09G002840 vs. ExPASy Swiss-Prot
Match: A4QJG0 (30S ribosomal protein S7, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps7-A PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSEL 79
           NMAFKLSSEL
Sbjct: 115 NMAFKLSSEL 124

[Close]
BLAST of CmaCh09G002840 vs. ExPASy Swiss-Prot
Match: A4QJP4 (30S ribosomal protein S7, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rps7-A PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSEL 79
           NMAFKLSSEL
Sbjct: 115 NMAFKLSSEL 124

[Close]
BLAST of CmaCh09G002840 vs. ExPASy Swiss-Prot
Match: Q67ID1 (30S ribosomal protein S7, chloroplastic OS=Allium textile OX=207935 GN=rps7 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSEL 79
           NMAFKLSSEL
Sbjct: 115 NMAFKLSSEL 124

[Close]
BLAST of CmaCh09G002840 vs. ExPASy Swiss-Prot
Match: Q9GE26 (30S ribosomal protein S7, chloroplastic OS=Amborella trichopoda OX=13333 GN=rps7-A PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSEL 79
           NMAFKLSSEL
Sbjct: 115 NMAFKLSSEL 124

[Close]
BLAST of CmaCh09G002840 vs. ExPASy Swiss-Prot
Match: Q67IL8 (30S ribosomal protein S7, chloroplastic OS=Ananas comosus OX=4615 GN=rps7 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSEL 79
           NMAFKLSSEL
Sbjct: 115 NMAFKLSSEL 124

[Close]
BLAST of CmaCh09G002840 vs. ExPASy TrEMBL
Match: A0A5H2XQA4 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_1384S000200 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.7e-34
Identity = 87/138 (63.04%), Postives = 88/138 (63.77%), Query Frame = 0 

Query: 111 QVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 170
           +VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG
Sbjct: 59  RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 118

Query: 171 RSS-------------------------------------------------PSQIVMIR 200
           RSS                                                 PSQI MIR
Sbjct: 119 RSSALEPEQATMRQKIFFLKRFYSNYYMSKRFSLTLSVSTNNSKCLDFFRTGPSQIAMIR 178

[Close]
BLAST of CmaCh09G002840 vs. ExPASy TrEMBL
Match: A0A6N2LBJ7 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS205763 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 76/90 (84.44%), Postives = 78/90 (86.67%), Query Frame = 0 

Query: 111 QVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 170
           +VRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG
Sbjct: 100 RVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 159

Query: 171 RSSPSQIVMIRSTS-FYTISETQGLNRMDM 200
             S S+     S   FYTISETQGLNRMDM
Sbjct: 160 VLSRSESNSNDSKHFFYTISETQGLNRMDM 189

[Close]
BLAST of CmaCh09G002840 vs. ExPASy TrEMBL
Match: A0A3P6DRG2 (Ribosomal protein S7 OS=Brassica campestris OX=3711 GN=BRASC59T46513Z PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 75/104 (72.12%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSELRLTSLLLSCYNPLPAEPPFSSIHRDKMEDWCQQV 113
           NMAFKLSSE     L+ +      A P   SI R ++ +W +Q+
Sbjct: 115 NMAFKLSSE-----LVDAAKGSGDAIPKRKSIKRKRLIEWQRQI 153

[Close]
BLAST of CmaCh09G002840 vs. ExPASy TrEMBL
Match: A0A2H4T230 (30S ribosomal protein S7, chloroplastic OS=Cucurbita maxima OX=3661 GN=rps7 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSEL 79
           NMAFKLSSEL
Sbjct: 115 NMAFKLSSEL 124

[Close]
BLAST of CmaCh09G002840 vs. ExPASy TrEMBL
Match: A0A6M9QK30 (30S ribosomal protein S7, chloroplastic OS=Clausia trichosepala OX=264422 GN=rps7 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSEL 79
           NMAFKLSSEL
Sbjct: 115 NMAFKLSSEL 124

[Close]
BLAST of CmaCh09G002840 vs. NCBI nr
Match: KAF3583698.1 (hypothetical protein F2Q69_00032189 [Brassica cretica])

HSP 1 Score: 195.7 bits (496), Expect = 3.9e-46
Identity = 107/165 (64.85%), Postives = 120/165 (72.73%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALA       ++   G 
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALA-----XVNKNESGS 114

Query: 69  NMAFKLSSELRLTSLLLSCYNPLPAEPPFSSIHRDKMEDWCQQVRLTSGFEITAYIPGIG 128
                ++            ++ +  + P S++ +        +VRLTSGFEITAYIPG+G
Sbjct: 115 KGDLSVN------------FSTITPKKPNSALRK------VARVRLTSGFEITAYIPGVG 174

Query: 129 HNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 174
           HNLQEHSVVLVRGGRV DLPGVRYHIVRGTLDAVGVKDRQQGRSS
Sbjct: 175 HNLQEHSVVLVRGGRVMDLPGVRYHIVRGTLDAVGVKDRQQGRSS 196

[Close]
BLAST of CmaCh09G002840 vs. NCBI nr
Match: KAG9438508.1 (hypothetical protein H6P81_021541 [Aristolochia fimbriata])

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-37
Identity = 95/151 (62.91%), Postives = 100/151 (66.23%), Query Frame = 0 

Query: 80  LTSLLLSCYNPLPAEPPFSSIHRDKMED---------------------WCQQVRLTSGF 139
           LTSLLLS YNP+PAEPPFSS+HRDK+                          +VRLTSGF
Sbjct: 190 LTSLLLSWYNPIPAEPPFSSVHRDKIVTVRVTYLSTFPLSPPKPNSALRKVARVRLTSGF 249

Query: 140 EITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS----- 189
           EITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS     
Sbjct: 250 EITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSYHETK 309

[Close]
BLAST of CmaCh09G002840 vs. NCBI nr
Match: BBN70063.1 (hypothetical protein Prudu_1384S000200 [Prunus dulcis])

HSP 1 Score: 154.8 bits (390), Expect = 7.6e-34
Identity = 87/138 (63.04%), Postives = 88/138 (63.77%), Query Frame = 0 

Query: 111 QVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 170
           +VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG
Sbjct: 59  RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 118

Query: 171 RSS-------------------------------------------------PSQIVMIR 200
           RSS                                                 PSQI MIR
Sbjct: 119 RSSALEPEQATMRQKIFFLKRFYSNYYMSKRFSLTLSVSTNNSKCLDFFRTGPSQIAMIR 178

[Close]
BLAST of CmaCh09G002840 vs. NCBI nr
Match: KAG5588342.1 (hypothetical protein H5410_048776 [Solanum commersonii])

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-31
Identity = 80/112 (71.43%), Postives = 82/112 (73.21%), Query Frame = 0 

Query: 111 QVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 170
           +VRLTSGFEITAYIPGIGHN QEH VVLVRG RVKDLPGVRYHIVRGTLDAVGVKD QQG
Sbjct: 38  RVRLTSGFEITAYIPGIGHNSQEHFVVLVRGVRVKDLPGVRYHIVRGTLDAVGVKDCQQG 97

Query: 171 RSS-----------------------PSQIVMIRSTSFYTISETQGLNRMDM 200
           RSS                        SQI MIRST FYTISETQGLNRMD+
Sbjct: 98  RSSALFSLTLSVSTNNSKYLDFFRTGSSQIAMIRSTFFYTISETQGLNRMDI 149

[Close]
BLAST of CmaCh09G002840 vs. NCBI nr
Match: VDD24675.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 139.4 bits (350), Expect = 3.3e-29
Identity = 75/104 (72.12%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSELRLTSLLLSCYNPLPAEPPFSSIHRDKMEDWCQQV 113
           NMAFKLSSE     L+ +      A P   SI R ++ +W +Q+
Sbjct: 115 NMAFKLSSE-----LVDAAKGSGDAIPKRKSIKRKRLIEWQRQI 153

[Close]
BLAST of CmaCh09G002840 vs. TAIR 10
Match: ATCG01240.1 (ribosomal protein S7 )

HSP 1 Score: 134.4 bits (337), Expect = 9.9e-32
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSEL 79
           NMAFKLSSEL
Sbjct: 115 NMAFKLSSEL 124

[Close]
BLAST of CmaCh09G002840 vs. TAIR 10
Match: ATCG00900.1 (Ribosomal protein S7p/S5e family protein )

HSP 1 Score: 134.4 bits (337), Expect = 9.9e-32
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 9   ETNPLSVLRQAIRGVTPDIAGKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 68
           ETNPLSVLRQAIRGVTPDIA KARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR
Sbjct: 55  ETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGR 114

Query: 69  NMAFKLSSEL 79
           NMAFKLSSEL
Sbjct: 115 NMAFKLSSEL 124

[Close]
BLAST of CmaCh09G002840 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 128.3 bits (321), Expect = 7.1e-30
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 111 QVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 170
           +VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG
Sbjct: 54  RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 113

Query: 171 RS 173
           RS
Sbjct: 114 RS 115

[Close]
BLAST of CmaCh09G002840 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 128.3 bits (321), Expect = 7.1e-30
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 111 QVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 170
           +VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG
Sbjct: 54  RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 113

Query: 171 RS 173
           RS
Sbjct: 114 RS 115

[Close]
BLAST of CmaCh09G002840 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 128.3 bits (321), Expect = 7.1e-30
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 111 QVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 170
           +VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG
Sbjct: 54  RVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQG 113

Query: 171 RS 173
           RS
Sbjct: 114 RS 115

The following BLAST results are available for this feature:
BLAST of CmaCh09G002840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A4QJG01.4e-3097.1430S ribosomal protein S7, chloroplastic OS=Aethionema cordifolium OX=434059 GN=r... [more]
A4QJP41.4e-3097.1430S ribosomal protein S7, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=r... [more]
Q67ID11.4e-3097.1430S ribosomal protein S7, chloroplastic OS=Allium textile OX=207935 GN=rps7 PE=3... [more]
Q9GE261.4e-3097.1430S ribosomal protein S7, chloroplastic OS=Amborella trichopoda OX=13333 GN=rps7... [more]
Q67IL81.4e-3097.1430S ribosomal protein S7, chloroplastic OS=Ananas comosus OX=4615 GN=rps7 PE=3 S... [more]
BLAST of CmaCh09G002840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5H2XQA43.7e-3463.04Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_1384S000200 PE=3 SV=1[more]
A0A6N2LBJ72.2e-3184.44Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS2057... [more]
A0A3P6DRG21.6e-2972.12Ribosomal protein S7 OS=Brassica campestris OX=3711 GN=BRASC59T46513Z PE=3 SV=1[more]
A0A2H4T2301.8e-2898.5730S ribosomal protein S7, chloroplastic OS=Cucurbita maxima OX=3661 GN=rps7 PE=3... [more]
A0A6M9QK301.8e-2898.5730S ribosomal protein S7, chloroplastic OS=Clausia trichosepala OX=264422 GN=rps... [more]
BLAST of CmaCh09G002840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3583698.13.9e-4664.85hypothetical protein F2Q69_00032189 [Brassica cretica][more]
KAG9438508.11.9e-3762.91hypothetical protein H6P81_021541 [Aristolochia fimbriata][more]
BBN70063.17.6e-3463.04hypothetical protein Prudu_1384S000200 [Prunus dulcis][more]
KAG5588342.12.1e-3171.43hypothetical protein H5410_048776 [Solanum commersonii][more]
VDD24675.13.3e-2972.12unnamed protein product [Brassica rapa][more]
BLAST of CmaCh09G002840 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG01240.19.9e-3297.14ribosomal protein S7 [more]
ATCG00900.19.9e-3297.14Ribosomal protein S7p/S5e family protein [more]
ATCG00065.17.1e-3098.39ribosomal protein S12A [more]
ATCG01230.17.1e-3098.39ribosomal protein S12B [more]
ATCG00905.17.1e-3098.39ribosomal protein S12C [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 115..134
score: 75.14
coord: 151..167
score: 64.3
coord: 134..151
score: 88.58
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 109..170
e-value: 6.2E-18
score: 64.5
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 111..174
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 10..78
e-value: 1.9E-16
score: 60.1
NoneNo IPR availableGENE3D2.40.50.140coord: 106..178
e-value: 3.7E-32
score: 112.6
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 111..174
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 111..173
e-value: 9.9E-34
score: 113.9
IPR036823Ribosomal protein S7 domain superfamilyGENE3D1.10.455.10Ribosomal protein S7 domaincoord: 4..82
e-value: 2.7E-19
score: 71.6
IPR036823Ribosomal protein S7 domain superfamilySUPERFAMILY47973Ribosomal protein S7coord: 7..79
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 109..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G002840.1CmaCh09G002840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome