CmaCh09G002680 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G002680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 1113027 .. 1113281 (-)
RNA-Seq ExpressionCmaCh09G002680
SyntenyCmaCh09G002680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTTCCACTCTCCATGGAAGCTCGGCTGCTTCTGTTTATGGCGGTTTTCACTCTTCTGGTCTCCGGGGAAAGCAAAGCGGCAATGGGGATCGTCGTTGCCGTCCAACATCCACCTTCAAATATGCAGGAGAATCCCCGGAAGAAGCTGCCATCGCCATCGTCTCCGCCGCCGTGGAGTCAGTCGTTCAATGCGCTCTTCGCAAGCAAGAGGAAGGTACCAAACACTTGGGATCCACTCCACAATCGCTGA

mRNA sequence

ATGCCATTTCCACTCTCCATGGAAGCTCGGCTGCTTCTGTTTATGGCGGTTTTCACTCTTCTGGTCTCCGGGGAAAGCAAAGCGGCAATGGGGATCGTCGTTGCCGTCCAACATCCACCTTCAAATATGCAGGAGAATCCCCGGAAGAAGCTGCCATCGCCATCGTCTCCGCCGCCGTGGAGTCAGTCGTTCAATGCGCTCTTCGCAAGCAAGAGGAAGGTACCAAACACTTGGGATCCACTCCACAATCGCTGA

Coding sequence (CDS)

ATGCCATTTCCACTCTCCATGGAAGCTCGGCTGCTTCTGTTTATGGCGGTTTTCACTCTTCTGGTCTCCGGGGAAAGCAAAGCGGCAATGGGGATCGTCGTTGCCGTCCAACATCCACCTTCAAATATGCAGGAGAATCCCCGGAAGAAGCTGCCATCGCCATCGTCTCCGCCGCCGTGGAGTCAGTCGTTCAATGCGCTCTTCGCAAGCAAGAGGAAGGTACCAAACACTTGGGATCCACTCCACAATCGCTGA

Protein sequence

MPFPLSMEARLLLFMAVFTLLVSGESKAAMGIVVAVQHPPSNMQENPRKKLPSPSSPPPWSQSFNALFASKRKVPNTWDPLHNR
Homology
BLAST of CmaCh09G002680 vs. ExPASy TrEMBL
Match: A0A0A0KZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.0e-19
Identity = 57/81 (70.37%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 7  MEARLLLFMAVFTLLVSGESKAAMGIVVAV---QHPPSNMQENPRKKLPSPSSPPPWSQS 66
          MEARLLL MAV TLLVSG++KA MG        QHP SNMQE  RK L   SSPPP S  
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 67 FNALFASKRKVPNTWDPLHNR 85
          FNALFASKRKVPNTWDP+HNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

BLAST of CmaCh09G002680 vs. ExPASy TrEMBL
Match: A0A5D3D9C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002930 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11
Identity = 49/72 (68.06%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 7  MEARLLLFMAVFTLLVSGESKAAMGIVVAV--QHPPSNMQENPRKKLPSPSSPPPWSQSF 66
          MEARLLL MAV TLLVSG +KA MG+ VA+  QHP SNMQE  RK L   SSPP  S  F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 67 NALFASKRKVPN 77
          NALFASKRK  N
Sbjct: 61 NALFASKRKSMN 72

BLAST of CmaCh09G002680 vs. NCBI nr
Match: KAE8649873.1 (hypothetical protein Csa_012848, partial [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-14
Identity = 47/69 (68.12%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 19 TLLVSGESKAAMGIVVAV---QHPPSNMQENPRKKLPSPSSPPPWSQSFNALFASKRKVP 78
          TLLVSG++KA MG        QHP SNMQE  RK L   SSPPP S  FNALFASKRKVP
Sbjct: 2  TLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKVP 61

Query: 79 NTWDPLHNR 85
          NTWDP+HNR
Sbjct: 62 NTWDPIHNR 70

BLAST of CmaCh09G002680 vs. NCBI nr
Match: KAA0064426.1 (hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK20161.1 hypothetical protein E5676_scaffold134G002930 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 49/72 (68.06%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 7  MEARLLLFMAVFTLLVSGESKAAMGIVVAV--QHPPSNMQENPRKKLPSPSSPPPWSQSF 66
          MEARLLL MAV TLLVSG +KA MG+ VA+  QHP SNMQE  RK L   SSPP  S  F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 67 NALFASKRKVPN 77
          NALFASKRK  N
Sbjct: 61 NALFASKRKSMN 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZW17.0e-1970.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1[more]
A0A5D3D9C51.8e-1168.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAE8649873.13.7e-1468.12hypothetical protein Csa_012848, partial [Cucumis sativus][more]
KAA0064426.13.8e-1168.06hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK201... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G002680.1CmaCh09G002680.1mRNA