CmaCh09G002300 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G002300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	THO complex subunit 5B
Location	Cma_Chr09: 983330 .. 984487 (-)
RNA-Seq Expression	CmaCh09G002300
Synteny	CmaCh09G002300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGGAACATTGATTCACCTGTCGAAAATCTTAAATTGCAAGACAAGGTAACTTCTTTTTTTTTTTTCCCCTTTATAAAAATTATGTTATATTGATTTTCTGAATGTTGACATCATTATCGTTTTGGCAGATTAAAATCAGCATGGAGTACCCTCTTAGGCCTCCTCTTTTCACTTTGAATTTTTACTCGATGAATTCTGAAGAAAACCATGATGAGAGTGACAACTCTGATTGGTATAATGAACGTCAGATCATGGAAGCTGAGGTAAGGAGGAAAGTTTGTTTTGATATCTTCTCAGACACCTCATTGTCATTGCAGTCCTGATCTTTACAAACATGATCTAGAAAGTATATGTGATGGAAAAGGCCCTTTTATGTTGTAGATTTTTTAAATGTCATTTTTATGAATTTGACCTCTTTGGAGCTCGAGCACTGGTTGTTGACCTGGTAATGTTTCACTTAGTTGATCTGTGTTTTTGGTTTTGTAGGTGAATCGTTGTAAACTTGAGATGCTGCTTTTGGATCAAGAGAACTATATATTGTCTCATCAAATTTGTTGTCTTGCTATGTTGTTTAACTACTGCATCGACGAGGCATCCCTGTTCTCTGAAAGGAGAAATTGTAGTTCTGTCACTGACGTTGGATTATACAAACCTGTTAGTGGTAGTTTGCATGCCAGAGTACTTAGAGGAAGGGATCGTAGGAAGATGATATCCTGGAAAGATATTGAAGTCTCTCCCGGCTAAGAATGTGATAATTTCCTTCTTAGCCAATTTCTCCAGCATTGAAATATTGATTGATGTAGCGGCCATAGATTGCTACATACCTGAACCCGATTCTCAGCTATAGGTAGATGATGCGCAACCTCCTTGACCAAATACAAGCTTGAATGTTCAGCCAAACTGATCACTTTCTTCTCGTGCATTTGCTTATATAATGAGAAAGTTCGTTTTTTTTAAAGCCCTTTTCTTTGTAATCGAGTTGGGTAACTGAGAGAATTACTACTGTATAGCACTGAGGCATAACTTTTCATGTCAAAACTCATAAGGTTATGAGTTTCAATTGTATTGATTGAATACCCGAGAGAATCATGTTTGTTGATTGACTTCCCCGAGTTTTGCTAGAATTTTTAATATTATTGTTGTTAAGGCTGA

mRNA sequence

ATGGCCAGGAACATTGATTCACCTGTCGAAAATCTTAAATTGCAAGACAAGATTAAAATCAGCATGGAGTACCCTCTTAGGCCTCCTCTTTTCACTTTGAATTTTTACTCGATGAATTCTGAAGAAAACCATGATGAGAGTGACAACTCTGATTGGTATAATGAACGTCAGATCATGGAAGCTGAGGTGAATCGTTGTAAACTTGAGATGCTGCTTTTGGATCAAGAGAACTATATATTGTCTCATCAAATTTGTTGTCTTGCTATGTTGTTTAACTACTGCATCGACGAGGCATCCCTGTTCTCTGAAAGGAGAAATTGTAGTTCTGTCACTGACGTTGGATTATACAAACCTGTTAGTGGTAGTTTGCATGCCAGAGTACTTAGAGGAAGGGATCGTAGGAAGATGATATCCTGGAAAGATATTGAAGTCTCTCCCGGCTAAGAATGTGATAATTTCCTTCTTAGCCAATTTCTCCAGCATTGAAATATTGATTGATGTAGCGGCCATAGATTGCTACATACCTGAACCCGATTCTCAGCTATAGGTAGATGATGCGCAACCTCCTTGACCAAATACAAGCTTGAATGTTCAGCCAAACTGATCACTTTCTTCTCGTGCATTTGCTTATATAATGAGAAAGTTCGTTTTTTTTAAAGCCCTTTTCTTTGTAATCGAGTTGGGTAACTGAGAGAATTACTACTGTATAGCACTGAGGCATAACTTTTCATGTCAAAACTCATAAGGTTATGAGTTTCAATTGTATTGATTGAATACCCGAGAGAATCATGTTTGTTGATTGACTTCCCCGAGTTTTGCTAGAATTTTTAATATTATTGTTGTTAAGGCTGA

Coding sequence (CDS)

ATGGCCAGGAACATTGATTCACCTGTCGAAAATCTTAAATTGCAAGACAAGATTAAAATCAGCATGGAGTACCCTCTTAGGCCTCCTCTTTTCACTTTGAATTTTTACTCGATGAATTCTGAAGAAAACCATGATGAGAGTGACAACTCTGATTGGTATAATGAACGTCAGATCATGGAAGCTGAGGTGAATCGTTGTAAACTTGAGATGCTGCTTTTGGATCAAGAGAACTATATATTGTCTCATCAAATTTGTTGTCTTGCTATGTTGTTTAACTACTGCATCGACGAGGCATCCCTGTTCTCTGAAAGGAGAAATTGTAGTTCTGTCACTGACGTTGGATTATACAAACCTGTTAGTGGTAGTTTGCATGCCAGAGTACTTAGAGGAAGGGATCGTAGGAAGATGATATCCTGGAAAGATATTGAAGTCTCTCCCGGCTAA

Protein sequence

MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIMEAEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVSGSLHARVLRGRDRRKMISWKDIEVSPG

Homology

[Close]

BLAST of CmaCh09G002300 vs. ExPASy Swiss-Prot
Match: F4K4J0 (THO complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=THO5B PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.4e-33
Identity = 72/128 (56.25%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 13  KLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIMEAEVNRCKLEMLL 72
           KL+  ++ISMEYPLRPPLF+L+ ++ +S  N + ++ SD YNE + MEAEVN   L+++ 
Sbjct: 682 KLEAMVQISMEYPLRPPLFSLSLHASSSSGNENGTNESDHYNELRAMEAEVNLHMLKIIP 741

Query: 73  LDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVSGSLHARVLRGRD 132
            DQENY+LSHQI CLAMLF+Y +D+ S  S+R   ++V DVGL KPV G L  R  RGRD
Sbjct: 742 SDQENYLLSHQIRCLAMLFDYYVDDPSPDSKRGTATTVVDVGLCKPVDGKLLVRSFRGRD 801

Query: 133 RRKMISWK 141
            RKMISWK
Sbjct: 802 HRKMISWK 809

[Close]

BLAST of CmaCh09G002300 vs. ExPASy TrEMBL
Match: A0A0A0KZS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639830 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.8e-58
Identity = 114/147 (77.55%), Postives = 125/147 (85.03%), Query Frame = 0


Query: 1   MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIME 60
           + RN + P +NLKLQ KIKISMEYPLRPP+FTLN Y+MNSEEN +E D+SDWYNE + ME
Sbjct: 666 LTRNTERPTKNLKLQAKIKISMEYPLRPPVFTLNLYTMNSEENREECDDSDWYNELRAME 725

Query: 61  AEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVS 120
           AEVN   L+ML LDQENYILSHQICCLAMLFNYCI EASLFSERR  SSV D+GL KPVS
Sbjct: 726 AEVNLHILKMLPLDQENYILSHQICCLAMLFNYCISEASLFSERRKSSSVIDIGLCKPVS 785

Query: 121 GSLHARVLRGRDRRKMISWKDIEVSPG 148
           GSLHAR  RGRDRRKMISWKDIE +PG
Sbjct: 786 GSLHARSFRGRDRRKMISWKDIECTPG 812

[Close]

BLAST of CmaCh09G002300 vs. ExPASy TrEMBL
Match: A0A6J1J206 (THO complex subunit 5B OS=Cucurbita maxima OX=3661 GN=LOC111481103 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.5e-56
Identity = 113/147 (76.87%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 1   MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIME 60
           M RN DSP +NLKLQ KIKISMEYPLRPP FTLN Y++NSEEN DESD+SDWYNE + ME
Sbjct: 669 MTRNTDSPAKNLKLQAKIKISMEYPLRPPFFTLNLYTINSEENRDESDDSDWYNELRAME 728

Query: 61  AEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVS 120
           AEVN   L ML LDQENYILSHQICCL MLFNYCI+EAS  SER+  S V DVGL KPVS
Sbjct: 729 AEVNLHILNMLPLDQENYILSHQICCLEMLFNYCINEASRSSERKKSSFVIDVGLCKPVS 788

Query: 121 GSLHARVLRGRDRRKMISWKDIEVSPG 148
           GS+HAR  RGRDRRKMISWKDIE +PG
Sbjct: 789 GSIHARSFRGRDRRKMISWKDIECAPG 815

[Close]

BLAST of CmaCh09G002300 vs. ExPASy TrEMBL
Match: A0A6J1FJR5 (THO complex subunit 5B OS=Cucurbita moschata OX=3662 GN=LOC111445974 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.3e-56
Identity = 113/147 (76.87%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 1   MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIME 60
           M RN DSP +NLKLQ KIKISMEYPLR P FTLN Y++NSEEN DESD+SDWYNE + ME
Sbjct: 669 MTRNTDSPAKNLKLQAKIKISMEYPLRSPFFTLNLYTINSEENRDESDDSDWYNELRAME 728

Query: 61  AEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVS 120
           AEVN   L+ML LDQENYILSHQICCL MLFNYCI EAS  SER+  SSV DVGL KPVS
Sbjct: 729 AEVNLHILKMLPLDQENYILSHQICCLEMLFNYCISEASRSSERKKSSSVIDVGLCKPVS 788

Query: 121 GSLHARVLRGRDRRKMISWKDIEVSPG 148
           GS+HAR  RGRDRRKMISWKDIE +PG
Sbjct: 789 GSIHARSFRGRDRRKMISWKDIECAPG 815

[Close]

BLAST of CmaCh09G002300 vs. ExPASy TrEMBL
Match: A0A5A7VBI1 (THO complex subunit 5B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00890 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.6e-56
Identity = 114/147 (77.55%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 1   MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIME 60
           + RN + P +NLKLQ KIKISMEYPLRPP+FTLN Y+MNSEEN +ESD+SDWYNE + ME
Sbjct: 669 LTRNTEQPAKNLKLQAKIKISMEYPLRPPVFTLNLYTMNSEENCEESDDSDWYNELRAME 728

Query: 61  AEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVS 120
           AEVN   L+ML LDQENYILSHQI CLAMLFNYCI EASL SERR  SSV DVGL KPVS
Sbjct: 729 AEVNLHILKMLPLDQENYILSHQIRCLAMLFNYCISEASLSSERRKSSSVIDVGLCKPVS 788

Query: 121 GSLHARVLRGRDRRKMISWKDIEVSPG 148
           GSLHAR  RGRDRRKMISWKDIE +PG
Sbjct: 789 GSLHARSFRGRDRRKMISWKDIECTPG 815

[Close]

BLAST of CmaCh09G002300 vs. ExPASy TrEMBL
Match: A0A5D3D9N3 (THO complex subunit 5B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003360 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.6e-56
Identity = 114/147 (77.55%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 1   MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIME 60
           + RN + P +NLKLQ KIKISMEYPLRPP+FTLN Y+MNSEEN +ESD+SDWYNE + ME
Sbjct: 626 LTRNTEQPAKNLKLQAKIKISMEYPLRPPVFTLNLYTMNSEENCEESDDSDWYNELRAME 685

Query: 61  AEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVS 120
           AEVN   L+ML LDQENYILSHQI CLAMLFNYCI EASL SERR  SSV DVGL KPVS
Sbjct: 686 AEVNLHILKMLPLDQENYILSHQIRCLAMLFNYCISEASLSSERRKSSSVIDVGLCKPVS 745

Query: 121 GSLHARVLRGRDRRKMISWKDIEVSPG 148
           GSLHAR  RGRDRRKMISWKDIE +PG
Sbjct: 746 GSLHARSFRGRDRRKMISWKDIECTPG 772

[Close]

BLAST of CmaCh09G002300 vs. NCBI nr
Match: KAG7024258.1 (THO complex subunit 5B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.8 bits (717), Expect = 6.8e-72
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIME 60
           MARNIDSPVENLKLQD+IK+SMEYPLRPPLFTLN YSM SEENHDESDNSDWYNERQIME
Sbjct: 1   MARNIDSPVENLKLQDEIKVSMEYPLRPPLFTLNLYSMKSEENHDESDNSDWYNERQIME 60

Query: 61  AEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVS 120
           AEVN  KLEML LDQENYI SHQICCLAMLFNYCIDEASLFSERRNCSSVTD+GLYKPVS
Sbjct: 61  AEVNLRKLEMLPLDQENYISSHQICCLAMLFNYCIDEASLFSERRNCSSVTDIGLYKPVS 120

Query: 121 GSLHARVLRGRDRRKMISWKDIEVSPG 148
           GSLHARVLRGRDRRKMISWKDIE SPG
Sbjct: 121 GSLHARVLRGRDRRKMISWKDIEGSPG 147

[Close]

BLAST of CmaCh09G002300 vs. NCBI nr
Match: KAG6591379.1 (THO complex subunit 5B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.0 bits (702), Expect = 3.7e-70
Identity = 134/144 (93.06%), Postives = 137/144 (95.14%), Query Frame = 0


Query: 4   NIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIMEAEV 63
           NIDSPVENLKLQD+IK+SMEYPLRPPLFTLN YSM SEENHDESDNSDWYNERQIMEAEV
Sbjct: 483 NIDSPVENLKLQDEIKVSMEYPLRPPLFTLNLYSMKSEENHDESDNSDWYNERQIMEAEV 542

Query: 64  NRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVSGSL 123
           N  KLEML LDQENYI SHQICCLAMLFNYCIDEASLFSERRNCSSVTD+GLYKPVSGSL
Sbjct: 543 NLRKLEMLPLDQENYISSHQICCLAMLFNYCIDEASLFSERRNCSSVTDIGLYKPVSGSL 602

Query: 124 HARVLRGRDRRKMISWKDIEVSPG 148
           HARVLRGRDRRKMISWKDIE SPG
Sbjct: 603 HARVLRGRDRRKMISWKDIEGSPG 626

[Close]

BLAST of CmaCh09G002300 vs. NCBI nr
Match: XP_004141378.1 (THO complex subunit 5B [Cucumis sativus] >KGN55195.1 hypothetical protein Csa_012617 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 114/147 (77.55%), Postives = 125/147 (85.03%), Query Frame = 0


Query: 1   MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIME 60
           + RN + P +NLKLQ KIKISMEYPLRPP+FTLN Y+MNSEEN +E D+SDWYNE + ME
Sbjct: 666 LTRNTERPTKNLKLQAKIKISMEYPLRPPVFTLNLYTMNSEENREECDDSDWYNELRAME 725

Query: 61  AEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVS 120
           AEVN   L+ML LDQENYILSHQICCLAMLFNYCI EASLFSERR  SSV D+GL KPVS
Sbjct: 726 AEVNLHILKMLPLDQENYILSHQICCLAMLFNYCISEASLFSERRKSSSVIDIGLCKPVS 785

Query: 121 GSLHARVLRGRDRRKMISWKDIEVSPG 148
           GSLHAR  RGRDRRKMISWKDIE +PG
Sbjct: 786 GSLHARSFRGRDRRKMISWKDIECTPG 812

[Close]

BLAST of CmaCh09G002300 vs. NCBI nr
Match: XP_022982205.1 (THO complex subunit 5B [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 5.2e-56
Identity = 113/147 (76.87%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 1   MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIME 60
           M RN DSP +NLKLQ KIKISMEYPLRPP FTLN Y++NSEEN DESD+SDWYNE + ME
Sbjct: 669 MTRNTDSPAKNLKLQAKIKISMEYPLRPPFFTLNLYTINSEENRDESDDSDWYNELRAME 728

Query: 61  AEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVS 120
           AEVN   L ML LDQENYILSHQICCL MLFNYCI+EAS  SER+  S V DVGL KPVS
Sbjct: 729 AEVNLHILNMLPLDQENYILSHQICCLEMLFNYCINEASRSSERKKSSFVIDVGLCKPVS 788

Query: 121 GSLHARVLRGRDRRKMISWKDIEVSPG 148
           GS+HAR  RGRDRRKMISWKDIE +PG
Sbjct: 789 GSIHARSFRGRDRRKMISWKDIECAPG 815

[Close]

BLAST of CmaCh09G002300 vs. NCBI nr
Match: XP_023524487.1 (THO complex subunit 5B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 5.2e-56
Identity = 113/147 (76.87%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 1   MARNIDSPVENLKLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIME 60
           M RN DSP +NLKLQ KIKISMEYPLRPP FTLN Y++NSEEN DESD+SDWYNE + ME
Sbjct: 669 MTRNTDSPAKNLKLQAKIKISMEYPLRPPFFTLNLYTINSEENRDESDDSDWYNELRAME 728

Query: 61  AEVNRCKLEMLLLDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVS 120
           AEVN   L+ML LDQENYILSHQICCL MLFNYCI EAS  SER+  S V DVGL KPVS
Sbjct: 729 AEVNLHILKMLPLDQENYILSHQICCLEMLFNYCISEASRSSERKKSSFVIDVGLCKPVS 788

Query: 121 GSLHARVLRGRDRRKMISWKDIEVSPG 148
           GS+HAR  RGRDRRKMISWKDIE +PG
Sbjct: 789 GSIHARSFRGRDRRKMISWKDIECAPG 815

[Close]

BLAST of CmaCh09G002300 vs. TAIR 10
Match: AT5G42920.1 (THO complex, subunit 5 )

HSP 1 Score: 141.7 bits (356), Expect = 4.6e-34
Identity = 72/128 (56.25%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 13  KLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIMEAEVNRCKLEMLL 72
           KL+  ++ISMEYPLRPPLF+L+ ++ +S  N + ++ SD YNE + MEAEVN   L+++ 
Sbjct: 565 KLEAMVQISMEYPLRPPLFSLSLHASSSSGNENGTNESDHYNELRAMEAEVNLHMLKIIP 624

Query: 73  LDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVSGSLHARVLRGRD 132
            DQENY+LSHQI CLAMLF+Y +D+ S  S+R   ++V DVGL KPV G L  R  RGRD
Sbjct: 625 SDQENYLLSHQIRCLAMLFDYYVDDPSPDSKRGTATTVVDVGLCKPVDGKLLVRSFRGRD 684

Query: 133 RRKMISWK 141
            RKMISWK
Sbjct: 685 HRKMISWK 692

[Close]

BLAST of CmaCh09G002300 vs. TAIR 10
Match: AT5G42920.2 (THO complex, subunit 5 )

HSP 1 Score: 141.7 bits (356), Expect = 4.6e-34
Identity = 72/128 (56.25%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 13  KLQDKIKISMEYPLRPPLFTLNFYSMNSEENHDESDNSDWYNERQIMEAEVNRCKLEMLL 72
           KL+  ++ISMEYPLRPPLF+L+ ++ +S  N + ++ SD YNE + MEAEVN   L+++ 
Sbjct: 682 KLEAMVQISMEYPLRPPLFSLSLHASSSSGNENGTNESDHYNELRAMEAEVNLHMLKIIP 741

Query: 73  LDQENYILSHQICCLAMLFNYCIDEASLFSERRNCSSVTDVGLYKPVSGSLHARVLRGRD 132
            DQENY+LSHQI CLAMLF+Y +D+ S  S+R   ++V DVGL KPV G L  R  RGRD
Sbjct: 742 SDQENYLLSHQIRCLAMLFDYYVDDPSPDSKRGTATTVVDVGLCKPVDGKLLVRSFRGRD 801

Query: 133 RRKMISWK 141
            RKMISWK
Sbjct: 802 HRKMISWK 809

The following BLAST results are available for this feature:

BLAST of CmaCh09G002300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4K4J0	6.4e-33	56.25	THO complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=THO5B PE=1 SV=1	[more]

BLAST of CmaCh09G002300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZS2	7.8e-58	77.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639830 PE=3 SV=1	[more]
A0A6J1J206	2.5e-56	76.87	THO complex subunit 5B OS=Cucurbita maxima OX=3661 GN=LOC111481103 PE=3 SV=1	[more]
A0A6J1FJR5	4.3e-56	76.87	THO complex subunit 5B OS=Cucurbita moschata OX=3662 GN=LOC111445974 PE=3 SV=1	[more]
A0A5A7VBI1	5.6e-56	77.55	THO complex subunit 5B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]
A0A5D3D9N3	5.6e-56	77.55	THO complex subunit 5B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]

BLAST of CmaCh09G002300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024258.1	6.8e-72	93.20	THO complex subunit 5B, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6591379.1	3.7e-70	93.06	THO complex subunit 5B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004141378.1	1.6e-57	77.55	THO complex subunit 5B [Cucumis sativus] >KGN55195.1 hypothetical protein Csa_01...	[more]
XP_022982205.1	5.2e-56	76.87	THO complex subunit 5B [Cucurbita maxima]	[more]
XP_023524487.1	5.2e-56	76.87	THO complex subunit 5B [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh09G002300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42920.1	4.6e-34	56.25	THO complex, subunit 5	[more]
AT5G42920.2	4.6e-34	56.25	THO complex, subunit 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019163	THO complex, subunit 5	PANTHER	PTHR13375	FMS INTERACTING PROTEIN	coord: 10..141
None	No IPR available	PANTHER	PTHR13375:SF3	THO COMPLEX SUBUNIT 5 HOMOLOG	coord: 10..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G002300.1	CmaCh09G002300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0032786	positive regulation of DNA-templated transcription, elongation
cellular_component	GO:0000445	THO complex part of transcription export complex
molecular_function	GO:0003729	mRNA binding