CmaCh09G001240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G001240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LTV1 homolog
Location	Cma_Chr09: 536518 .. 538053 (-)
RNA-Seq Expression	CmaCh09G001240
Synteny	CmaCh09G001240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATGAGATCGCAGTGTTAAATGGAGACACACAGCACACTGTCTCTCTTACTTCCGCCAGCCAAGGTATTAAATTTCTCAACTTTAATAACCCTAAACGCATTCATGTTTTTTTCTTTTTTTGTTTCTCTTTGTTTGATTAGTTTTAAATGTTGGTATGATCCATGTAAACATGTCACAAATTGATTTCATTCATGTCTTAAATTTTTAATATTGTAAATATTGTTGGTGTAGAAAGATATTGAATGTAGCAATGGGAAAGAATTTGAGAGGCGAGGATCCAATGAACCCTCTAAGAATTTGGTTCAAGCTATTGTTATTTCATGTCGCAACTAAAATGTTTTATGATTAAAACATACATTTTTTTAGTAAGACGATGAAATTTTGAATTTGTGAACCCATGAATCATTAATCACCCAAATCTTACTAAATTTGCAGATAAAACAAATGCATGCTCAAAAGAATTATAATTATAATTAGGGATGGAAATTATTGTTGAAATACATTATGTAAAATAAGGAAATAATGATCATGAGCTAGGTCATTAAATGACCGTCATGTCTGGTATATAACACCAGAAGCCTTGTTGCGAAAGTCACTCCCCGACAACTGCAAAAGGAGGCGTCGCTGCCTCCCTTCTCACCTTACTTTTCACTCCCTACTCCGTGGCGCTGAAACTGTCAGAAGGAAAGCAAAAGTTGTCTATTTTGGTTCGGTTTAGGACCGTTCAGAACCGAACCGTGCGTGCCCCTGATCTAAGTATTCTTCAATTTTCTTAACTCGACTCACTATGGGGAAGAAGAAATCCGCAACTTTCCAATTACTCGCTCGTGACTCATCCGATCCCAATTACGATGGAACTTCCGCCACCGACCGTGTTTTTGTTCGTGTCGACAACCACTCTTAATATATACTCTCCCTGTCTTCGATGATGGCCCTGCCGACGCCTCCGGTTCTGCCTGTTTTGATGAACCACCTAACTCAATATTTGCCGATGATGCTCCAGACGACTACGATGATGAGGAGAATGGAGGTTTCGAGCCTTCTGTAGGGTCTCGTGGGGAAGTTCGTGGAACAGCGCCTTTACCCGAAAATGTTAGGAAGGAGATTTTAGAGCTAGGGTTTCCTGATGATGGTTACAATTATTTGAGGACGCAGATAGTGATGTTGATAAGCCAAGAACTCGTCGGCTTTTGGATGATCAATTTGACACTGTGAGTTTTAATAGCTATGCATTCATTCCAATTCTGTAGATTTCTGATACTCATACATTTCTGTTCATACTTGACTGCAGCAATAATTAAGCCGGGACGACTATGCATCTAGTCACAATGATGGCAGTGGTTTTGATGAACCCTGTACACCTGAAGAAGACGAATCTGTTGCTCAAAAGCTCAATCATGCCCTTGGTGATTATAATAAGGATGAGTTGGAACTTGACCAAGGCTATAAGGCTCCTGCAGATATATTGAGTGGTAAAGAAGGATTAGAAGCTAAGGAGCTTTTGAGCGATGTAATTGATGAAAAACCCG

mRNA sequence

ATGAGTGATGAGATCGCAGTGTTAAATGGAGACACACAGCACACTGTCTCTCTTACTTCCGCCAGCCAAGACGACTACGATGATGAGGAGAATGGAGGTTTCGAGCCTTCTGTAGGGTCTCGTGGGGAAGTTCGTGGAACAGCGCCTTTACCCGAAAATGTTAGGAAGGAGATTTTAGAGCTAGGGTTTCCTGATGATGGTTACAATTATTTGAGGACGCAGATAGTGATGTTGATAAGCCAAGAACTCGTCGGCTTTTGGATGATCAATTTGACACTCAATAATTAAGCCGGGACGACTATGCATCTAGTCACAATGATGGCAGTGGTTTTGATGAACCCTGTACACCTGAAGAAGACGAATCTGTTGCTCAAAAGCTCAATCATGCCCTTGGTGATTATAATAAGGATGAGTTGGAACTTGACCAAGGCTATAAGGCTCCTGCAGATATATTGAGTGGTAAAGAAGGATTAGAAGCTAAGGAGCTTTTGAGCGATGTAATTGATGAAAAACCCG

Coding sequence (CDS)

ATGAGTGATGAGATCGCAGTGTTAAATGGAGACACACAGCACACTGTCTCTCTTACTTCCGCCAGCCAAGACGACTACGATGATGAGGAGAATGGAGGTTTCGAGCCTTCTGTAGGGTCTCGTGGGGAAGTTCGTGGAACAGCGCCTTTACCCGAAAATGTTAGGAAGGAGATTTTAGAGCTAGGGTTTCCTGATGATGGTTACAATTATTTGAGGACGCAGATAGTGATGTTGATAAGCCAAGAACTCGTCGGCTTTTGGATGATCAATTTGACACTCAATAATTAA

Protein sequence

MSDEIAVLNGDTQHTVSLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYLRTQIVMLISQELVGFWMINLTLNN

Homology

[Close]

BLAST of CmaCh09G001240 vs. ExPASy TrEMBL
Match: A0A5D3CI19 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001180 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-13
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + +DYD+EENGGF  S+ SRGEV GT+ LPENVR+EILELGFPDDGYNYL
Sbjct: 69  SIFADASEDYDEEENGGFGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. ExPASy TrEMBL
Match: A0A1S3BKZ8 (protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-13
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + +DYD+EENGGF  S+ SRGEV GT+ LPENVR+EILELGFPDDGYNYL
Sbjct: 69  SIFADASEDYDEEENGGFGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. ExPASy TrEMBL
Match: A0A6J1J360 (protein LTV1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480921 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.5e-13
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + DDYDDEENGGF  S  SRGE+ G A LPENVR+EILELGFPDDGYNYL
Sbjct: 69  SIFADAPDDYDDEENGGFGASRRSRGELGGPASLPENVRREILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. ExPASy TrEMBL
Match: A0A6J1FJD8 (protein LTV1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445999 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.5e-13
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + DDYDDEENGGF  S  SRGE+ G A LPENVR+EILELGFPDDGYNYL
Sbjct: 69  SIFADAPDDYDDEENGGFGASGRSRGELGGPASLPENVRREILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. ExPASy TrEMBL
Match: A0A0A0L517 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + +DYD+EENGGF  S+   G+V GT+ LPENVRK+ILELGFPDDGYNYL
Sbjct: 69  SIFADASEDYDEEENGGFGSSMQFSGDVGGTSSLPENVRKDILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. NCBI nr
Match: XP_038898842.1 (protein LTV1 homolog [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + +DYDDE+NGGF PS+  R EV GTAPLPENVR+EILELGFPDDGYNYL
Sbjct: 69  SIFADAPEDYDDEDNGGFGPSLRLREEVGGTAPLPENVRREILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. NCBI nr
Match: XP_008448616.1 (PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like protein [Cucumis melo var. makuwa] >TYK11461.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.0e-13
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + +DYD+EENGGF  S+ SRGEV GT+ LPENVR+EILELGFPDDGYNYL
Sbjct: 69  SIFADASEDYDEEENGGFGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. NCBI nr
Match: XP_022981924.1 (protein LTV1 homolog [Cucurbita maxima])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + DDYDDEENGGF  S  SRGE+ G A LPENVR+EILELGFPDDGYNYL
Sbjct: 69  SIFADAPDDYDDEENGGFGASRRSRGELGGPASLPENVRREILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. NCBI nr
Match: XP_022940362.1 (protein LTV1 homolog [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + DDYDDEENGGF  S  SRGE+ G A LPENVR+EILELGFPDDGYNYL
Sbjct: 69  SIFADAPDDYDDEENGGFGASGRSRGELGGPASLPENVRREILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. NCBI nr
Match: XP_023525399.1 (protein LTV1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 17  SLTSASQDDYDDEENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDDGYNYL 72
           S+ + + DDYDDEENGGF  S  SRGE+ G A LPENVR+EILELGFPDDGYNYL
Sbjct: 69  SIFADAPDDYDDEENGGFGASGRSRGELGGPASLPENVRREILELGFPDDGYNYL 123

[Close]

BLAST of CmaCh09G001240 vs. TAIR 10
Match: AT3G49990.1 (unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 13  QHTVSLTSASQDDYDDE------ENGGFEPSVGSRGEVRGTAPLPENVRKEILELGFPDD 72
           Q+ V++    ++D ++E      ++   E   G       ++ LP +VRKEILELG+PDD
Sbjct: 42  QNPVNINGFIEEDEEEEGDSSRFDDAPEEMDYGYSSFGDSSSSLPAHVRKEILELGYPDD 101

The following BLAST results are available for this feature:

BLAST of CmaCh09G001240 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh09G001240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CI19	2.9e-13	70.91	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BKZ8	2.9e-13	70.91	protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1	[more]
A0A6J1J360	6.5e-13	72.73	protein LTV1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111480921 PE=3 SV=1	[more]
A0A6J1FJD8	6.5e-13	72.73	protein LTV1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445999 PE=3 SV=1	[more]
A0A0A0L517	1.6e-11	65.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1	[more]

BLAST of CmaCh09G001240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898842.1	1.6e-13	72.73	protein LTV1 homolog [Benincasa hispida]	[more]
XP_008448616.1	6.0e-13	70.91	PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like p...	[more]
XP_022981924.1	1.3e-12	72.73	protein LTV1 homolog [Cucurbita maxima]	[more]
XP_022940362.1	1.3e-12	72.73	protein LTV1 homolog [Cucurbita moschata]	[more]
XP_023525399.1	1.3e-12	72.73	protein LTV1 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh09G001240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49990.1	2.2e-05	38.46	unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G001240.1	CmaCh09G001240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0042274	ribosomal small subunit biogenesis
biological_process	GO:0000056	ribosomal small subunit export from nucleus
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030688	preribosome, small subunit precursor
molecular_function	GO:0005085	guanyl-nucleotide exchange factor activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0031369	translation initiation factor binding