CmaCh09G001190 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G001190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 521363 .. 523883 (-)
RNA-Seq ExpressionCmaCh09G001190
SyntenyCmaCh09G001190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCACCCGGATTCAATCAACAATAAAGAGAGCTCAGATGAACAAAACTTGGGAATAATTGAATTTGAACTTCAACTGAGCAACACATTTCAGGTATGTGAAGTGATAAGGAAACAAAGAACAATACAAGATGATACAAATTATAAAAAGAAAGGGAAGGAAGGAGTTAGAGTAGTCTGAGGCGTAAACCTGATGGCGATAAACGAGAGTATCATCATGTCTGGCGAAATGCTAGGCTGAGTGCACTATCGACGACTTGAGTCGATGGCTTTTTCATCGGAAATCAGACGACTCGACGGAAGAGTTTCACTGATCCACCGGCGAGTCTGGTTTCTTCCATTATTCTTCTCATTTTCAATTACCGGTAAACCAGAGACGATGCAGGTCGTGGCATCGCGTAAGGCTTTTGGATTATACGTGTGACTGTAACAAGGGAAAGAAACGGTGTCATAAAATGTAAAATAATGATTTATATAATTTGGTATTAGAATAATAATTATAATTAAATTTACAATTTTAGCCTGGGTGGGGAGGCCATTTAACCAAAATTACCCTCCATTAGTTTGAGTTCCATATTTAATAGGTGACTCGGATCCAAAATTTGAGAGCAAATTAGGGTTCTACGATCCAGGCGGGAAAGGCGAGCTCATTGGAGCTAGAAGGAGACAAGTCCAAGCATTTCTCTGTGGCGACTGATATCATAATTTGCATCTAATGGCACTTCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTATTTACTGTTTCTTTTACCTTTAATCATTTGCAGTGATTTTATTTAGCTCGATCTCTGTGATGTCCCGTATCCACTTTGTTCTTTTCAAGCTGGTTAGAATAGGATTTCAATGCATCTAGATTTTTTAGTTCCGAATTCTCCACGAGGTGGTAATTGGTGAGAATGGATGGATCTGCGATTCAAAAAAAATTATTTTCTTTTTCGTATTTCTTCATTATGTTGTTTTTATATCCTTTATTGGGAATGAGATGGATCGGTTCATTTGAGATTCTGAATCTTTTTTGGGAATTGATTTCTACAGGTGGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGGTAAATTGGAATCAACTTCTGTTCCAACCGTTGTTGTTATCGTAAATTTATTGAAATGGTTATTTTTGTAGTATGATTGTATGGCGCCTCTGCTAAATCAACTCCATATATATTAATAATGACTATTTTCACTCCTTAATGGACATGAACTCAACATTAACCTGTTTCTCAAATGGTTTCAACTTGTTTTCTTTTGGAGGCAAGATTTCTTTACTGCCTTATTTTCATAGGCATTTCTAATTTAAGGCAGAAGTCTCGTTGGAAACTTAAAGTTCAAATCTTGTACCTGTTTATTGGCTCAACTGTGACCCAAAATTTTTCTGAAAGAAAATTGGCTGTATGTGTTCATAGGCATTTAGCTGTAAGACATTTTTGTTGATGAGTTTCTTCTGGTTACGTCATCTTAAACTCCATGCCGTATAATTTGTTTTTTTACAGCATGTAAGCACATGAAACGACCGTCATATATATCTTGATCAGTTAATTGTATAGAATATGAATTTGATTGTCTAAAAACGTGTCTTTTGGCTGTATGTTTGTGCATTTGCCAGGCAAAGGCCAAGTCACACGCAAAAGCTGAAGCCAAAACCCATCACTGATGAACACTTCTACTGATGTAGCTTATAGCGATGGAAGAGATGGAAACTACTGCATAGGGGAAGACTCCGATCATTGGTTGGAGAATGTGATTTTTGGCTTCATAATTAATTAGATTCAGTTTTTTTCTTTTTTTCTTTTCCTTCACTTCTGAAACAAAAGAAAATTCTCTGTTTAAACGGGGTTGGTATTGCTGCAAATACTGTATGGTGTATGCTTAGTTTTTCAGTGCCGATTGGCAATTCTGCCTGTGAGAAGAATGCTCTTGAAATAAAGGTGACACCATATTGATAAATAAGACTCGTTTGAGATTTCTTTTATCACAGTACCACCTCTAATTTCACTTTCGAGTTAAAGCTCTATGATTGGTATTGATCTCTATCCTGTGGTTCAGTTTATAGGATTAATTGGTGTATTACCAACGGAAACACAAGGCAGAGCAAAAACTCTAGAATATATTATCTTACTATAAAATCTCTAGACAACGGAAATATGCAAATGAAAGACAGGCAACAAAGATAAGGCTCCATCATGAACCTCGCATACCAAGATGAATGGTTGATGGGTATCCTTCAGAAGGCGCAGCATAGCTAACTTGTTGAAGTTTTTTTCTTGTTCTACTGAATTCAGAAAGAGTACAATTTTGCAGGAACTGAATCTACTTCAACTACAGCTCCCAGCAATCAAGACGAAAGCTTCATGCTAACACCCGGCCTTCTTCAAGCTTGTGACAGTAATTATACTAAACTCGATTCTCGCCTAACGAAGAAGAAGAATCGGCCTTCATGA

mRNA sequence

ATGAGCCACCCGGATTCAATCAACAATAAAGAGAGCTCAGATGAACAAAACTTGGGAATAATTGAATTTGAACTTCAACTGAGCAACACATTTCAGGTGGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGAAAGAGTACAATTTTGCAGGAACTGAATCTACTTCAACTACAGCTCCCAGCAATCAAGACGAAAGCTTCATGCTAACACCCGGCCTTCTTCAAGCTTGTGACAGTAATTATACTAAACTCGATTCTCGCCTAACGAAGAAGAAGAATCGGCCTTCATGA

Coding sequence (CDS)

ATGAGCCACCCGGATTCAATCAACAATAAAGAGAGCTCAGATGAACAAAACTTGGGAATAATTGAATTTGAACTTCAACTGAGCAACACATTTCAGGTGGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTACGGAAACATTAAGCTCAAGGTTCTGAAGAAAGAGTACAATTTTGCAGGAACTGAATCTACTTCAACTACAGCTCCCAGCAATCAAGACGAAAGCTTCATGCTAACACCCGGCCTTCTTCAAGCTTGTGACAGTAATTATACTAAACTCGATTCTCGCCTAACGAAGAAGAAGAATCGGCCTTCATGA

Protein sequence

MSHPDSINNKESSDEQNLGIIEFELQLSNTFQVARASAFTFGLVYGNIKLKVLKKEYNFAGTESTSTTAPSNQDESFMLTPGLLQACDSNYTKLDSRLTKKKNRPS
Homology
[Close]
BLAST of CmaCh09G001190 vs. NCBI nr
Match: KAG7024166.1 (hypothetical protein SDJN02_12979, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.5 bits (345), Expect = 6.7e-29
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0 

Query: 33  VARASAFTFGLVYGNIKLKVLKKEYNFAGTESTSTTAPSNQDESFMLTPGLLQACDSNYT 92
           VARASAFTFGLVYGNIKLKVLKKEYN  GTESTSTTAPSNQDESFMLT GLL+ACDSNYT
Sbjct: 17  VARASAFTFGLVYGNIKLKVLKKEYNLEGTESTSTTAPSNQDESFMLTLGLLRACDSNYT 76

Query: 93  KLDSRLTKKKNRPS 107
           KLDSRLTKKKNRPS
Sbjct: 77  KLDSRLTKKKNRPS 90

The following BLAST results are available for this feature:
BLAST of CmaCh09G001190 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G001190 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G001190 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024166.16.7e-2994.59hypothetical protein SDJN02_12979, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh09G001190 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G001190.1CmaCh09G001190.1mRNA