CmaCh09G000130 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G000130
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	splicing factor U2af small subunit B-like
Location	Cma_Chr09: 87546 .. 88304 (+)
RNA-Seq Expression	CmaCh09G000130
Synteny	CmaCh09G000130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAACACTTGGCCTCAATATTTGGCTCGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGATTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGACAATGTCTACGTTCAGTTTTGGGAGGATGACCAGGCAGCTGCCGCATTACAAGCGTTGCAATGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGACTGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGCACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAGTCTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGA

mRNA sequence

ATGGCTGAACACTTGGCCTCAATATTTGGCTCGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGATTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGACAATGTCTACGTTCAGTTTTGGGAGGATGACCAGGCAGCTGCCGCATTACAAGCGTTGCAATGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGACTGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGCACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAGTCTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGA

Coding sequence (CDS)

ATGGCTGAACACTTGGCCTCAATATTTGGCTCGGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCGACACTTCTCTTGTCGAACATGTACCAACGCCCCGACATGATCACCCCCGGCGTCGATGCTCAGGGCCAGCCTATAGATCCCCGAAAGATTCAGGAGCACTTTGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGTGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGACAATGTCTACGTTCAGTTTTGGGAGGATGACCAGGCAGCTGCCGCATTACAAGCGTTGCAATGGCGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCGGTGACTGATTTCCGCGAAGCCACGTGCCGCCAATACGAGGAGAATAATTGCAATCGAGGGGGATATTGCAATTTTATGCATGTCAAGATGATCGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGCACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAGGAGTTGGATAGGCGCGAGAGGGATTACAGAGATCGTGAGTCTCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCCAGACGAAGCAGAAGCCCTGTGA

Protein sequence

MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRHRGYRRSRSRSRSLSPRNRRSWIGARGITEIVSLAETDGARSVMIGMIGMGEGEGMVAPDEAEAL

Homology

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BLAST of CmaCh09G000130 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 2.7e-108
Identity = 187/211 (88.63%), Postives = 201/211 (95.26%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+CDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRH-RGYR---RSRSRSRSLSPRNRR 208
           RRKLFGR+ R YR   RSRSRSRS+SPRN+R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKR 211

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BLAST of CmaCh09G000130 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 4.1e-104
Identity = 182/209 (87.08%), Postives = 194/209 (92.82%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNVCDNLADHMI NVYV F E+D
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRH-RGYRR-SRSRSRSLSPRNRR 208
           RRKLFGR+ R YRR SRSRSRS+SPR +R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKR 209

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BLAST of CmaCh09G000130 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 8.0e-100
Identity = 182/242 (75.21%), Postives = 200/242 (82.64%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E LNVCDNLADHMI NVYVQF E++
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QA AA  ALQ RFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRRSWIGARGITEIVSLAETDGARSVMIGMIGMGEG 240
           RRKL+G     RRS  RSRS SPR+RR   G R   +     E DG R    G  G G G
Sbjct: 181 RRKLYGGRS--RRSHGRSRSPSPRHRR---GNRDRDDF--RRERDGYRGGGDGYRGGGGG 235

Query: 241 EG 243
            G
Sbjct: 241 GG 235

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BLAST of CmaCh09G000130 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.5e-95
Identity = 163/203 (80.30%), Postives = 179/203 (88.18%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           G+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIE L+VCDN ADHMI NVYVQF E+D
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAA ALQAL  R+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSP 204
           R++LFG     RRS S  RS SP
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSP 203

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BLAST of CmaCh09G000130 vs. ExPASy Swiss-Prot
Match: A1A4K8 (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.2e-65
Identity = 117/215 (54.42%), Postives = 157/215 (73.02%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAE+LASIFG+EKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIECLNVCDNLADHMIDNVYVQFWED 120
             D     +   ++QEH+++F+E+++ E+  K+GE+E +NVCDNL DH++ NVYV+F  +
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 DQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 180
           + A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRKLFGRHRGYRRSRSRSRSLSPRNRRSWIGARG 215
           LRR+L+GR R   RSRSRSR    R+R    G  G
Sbjct: 181 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGG 215

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BLAST of CmaCh09G000130 vs. ExPASy TrEMBL
Match: A0A6J1F6R3 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111442843 PE=4 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.7e-113
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYR--RSRSRSRSLSPRNRR 208
           RRKLFGRHRGYR  RSRSRSRSLSPRNR+
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSRSLSPRNRK 209

[Close]

BLAST of CmaCh09G000130 vs. ExPASy TrEMBL
Match: A0A6J1CN17 (splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC111012985 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.3e-113
Identity = 199/209 (95.22%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRRSW 210
           RRKLFGR+RGYRRSRSRSRSLSPRNR+ +
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDY 209

[Close]

BLAST of CmaCh09G000130 vs. ExPASy TrEMBL
Match: A0A5A7VFL1 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00280 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.5e-112
Identity = 198/209 (94.74%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRRSW 210
           RRKLFGR+RGYR SRSRSRSLSPRNR+ +
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEY 209

[Close]

BLAST of CmaCh09G000130 vs. ExPASy TrEMBL
Match: A0A1S3BUN6 (splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC103493856 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.5e-112
Identity = 198/209 (94.74%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRRSW 210
           RRKLFGR+RGYR SRSRSRSLSPRNR+ +
Sbjct: 181 RRKLFGRYRGYRPSRSRSRSLSPRNRKEY 209

[Close]

BLAST of CmaCh09G000130 vs. ExPASy TrEMBL
Match: A0A0A0L4P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664540 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.9e-112
Identity = 198/207 (95.65%), Postives = 202/207 (97.58%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRR 208
           RRKLFGR+RGYR SRSRSRSLSPRNR+
Sbjct: 181 RRKLFGRYRGYRASRSRSRSLSPRNRK 207

[Close]

BLAST of CmaCh09G000130 vs. NCBI nr
Match: KAG6608662.1 (Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 424.1 bits (1089), Expect = 8.5e-115
Identity = 214/253 (84.58%), Postives = 220/253 (86.96%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LN+CDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNICDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFG-RHRGYRRSRSRSRSLSPRNRRSWIGARGITEIVSLAETDGARSVMIGMIGMGE 240
           RRKLFG R RGYRRSRSRSRSLSPRNR+ +   R +TE                   MGE
Sbjct: 181 RRKLFGSRFRGYRRSRSRSRSLSPRNRKDY--DRRMTE-------------------MGE 232

Query: 241 GEGMVAPDEAEAL 253
           GEGM AP EAE L
Sbjct: 241 GEGMEAPGEAEVL 232

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BLAST of CmaCh09G000130 vs. NCBI nr
Match: XP_023521110.1 (splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG6591187.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024073.1 Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 423.7 bits (1088), Expect = 1.1e-114
Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRR 208
           RRKLFGRHRGYRRSRSRSRSLSPRNR+
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRK 207

[Close]

BLAST of CmaCh09G000130 vs. NCBI nr
Match: XP_022936161.1 (splicing factor U2af small subunit B-like [Cucurbita moschata])

HSP 1 Score: 418.7 bits (1075), Expect = 3.6e-113
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYR--RSRSRSRSLSPRNRR 208
           RRKLFGRHRGYR  RSRSRSRSLSPRNR+
Sbjct: 181 RRKLFGRHRGYRRSRSRSRSRSLSPRNRK 209

[Close]

BLAST of CmaCh09G000130 vs. NCBI nr
Match: XP_022142994.1 (splicing factor U2af small subunit B-like [Momordica charantia])

HSP 1 Score: 418.3 bits (1074), Expect = 4.7e-113
Identity = 199/209 (95.22%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRRSW 210
           RRKLFGR+RGYRRSRSRSRSLSPRNR+ +
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRKDY 209

[Close]

BLAST of CmaCh09G000130 vs. NCBI nr
Match: XP_038900064.1 (splicing factor U2af small subunit B-like [Benincasa hispida])

HSP 1 Score: 417.5 bits (1072), Expect = 7.9e-113
Identity = 199/207 (96.14%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNVCDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180

Query: 181 RRKLFGRHRGYRRSRSRSRSLSPRNRR 208
           RRKLFGR+RGYRRSRSRSRSLSPRNR+
Sbjct: 181 RRKLFGRYRGYRRSRSRSRSLSPRNRK 207

[Close]

BLAST of CmaCh09G000130 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 392.9 bits (1008), Expect = 2.0e-109
Identity = 187/211 (88.63%), Postives = 201/211 (95.26%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+CDNLADHMI NVYVQF E+D
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
           QAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRKLFGRH-RGYR---RSRSRSRSLSPRNRR 208
           RRKLFGR+ R YR   RSRSRSRS+SPRN+R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKR 211

[Close]

BLAST of CmaCh09G000130 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 379.0 bits (972), Expect = 2.9e-105
Identity = 182/209 (87.08%), Postives = 194/209 (92.82%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNVCDNLADHMI NVYV F E+D
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRH-RGYRR-SRSRSRSLSPRNRR 208
           RRKLFGR+ R YRR SRSRSRS+SPR +R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKR 209

[Close]

BLAST of CmaCh09G000130 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 379.0 bits (972), Expect = 2.9e-105
Identity = 182/209 (87.08%), Postives = 194/209 (92.82%), Query Frame = 0


Query: 1   MAEHLASIFGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
           MAEHLASIFG+EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDD 120
           GVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+E LNVCDNLADHMI NVYV F E+D
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDL 180
            AAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRKLFGRH-RGYRR-SRSRSRSLSPRNRR 208
           RRKLFGR+ R YRR SRSRSRS+SPR +R
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKR 209

[Close]

BLAST of CmaCh09G000130 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-77
Identity = 138/161 (85.71%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 51  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMID 110
           MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIE LN+CDNLADHMI 
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFWEDDQAAAALQALQWRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
           NVYVQF E+DQAAAALQALQ RFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHVKMIGKDLRRKLFGRH-RGYR---RSRSRSRSLSPRNRR 208
           MHVK++ ++LRRKLFGR+ R YR   RSRSRSRS+SPRN+R
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKR 161

[Close]

BLAST of CmaCh09G000130 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 129.8 bits (325), Expect = 3.1e-30
Identity = 64/167 (38.32%), Postives = 101/167 (60.48%), Query Frame = 0


Query: 9   FGSEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP 68
           FG+E+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLE 296

Query: 69  IDPRKIQEHFEDFYEDIYEELGKFGEIECLNVCDNLADHMIDNVYVQFWEDDQAAAALQA 128
               + +  +E+FYED++ E  K+GE+    VC N + H+  NVYV +   + A  A Q+
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LQWRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH 173
           +  R+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401

The following BLAST results are available for this feature:

BLAST of CmaCh09G000130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S709	2.7e-108	88.63	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q9FMY5	4.1e-104	87.08	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q6AUG0	8.0e-100	75.21	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9ZQW8	3.5e-95	80.30	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A1A4K8	2.2e-65	54.42	Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1	[more]

BLAST of CmaCh09G000130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6R3	1.7e-113	96.17	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1CN17	2.3e-113	95.22	splicing factor U2af small subunit B-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5A7VFL1	1.5e-112	94.74	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BUN6	1.5e-112	94.74	splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC10349385...	[more]
A0A0A0L4P8	1.9e-112	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664540 PE=4 SV=1	[more]

BLAST of CmaCh09G000130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608662.1	8.5e-115	84.58	Splicing factor U2af small subunit A, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023521110.1	1.1e-114	97.10	splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo] >KAG65911...	[more]
XP_022936161.1	3.6e-113	96.17	splicing factor U2af small subunit B-like [Cucurbita moschata]	[more]
XP_022142994.1	4.7e-113	95.22	splicing factor U2af small subunit B-like [Momordica charantia]	[more]
XP_038900064.1	7.9e-113	96.14	splicing factor U2af small subunit B-like [Benincasa hispida]	[more]

BLAST of CmaCh09G000130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27650.1	2.0e-109	88.63	U2 snRNP auxiliary factor small subunit, putative	[more]
AT5G42820.2	2.9e-105	87.08	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	2.9e-105	87.08	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.2	2.6e-77	85.71	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	3.1e-30	38.32	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 165..177 score: 63.29 coord: 75..90 score: 54.26 coord: 37..57 score: 62.34 coord: 130..154 score: 60.73 coord: 103..125 score: 55.53 coord: 18..37 score: 85.68
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..210
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.0087 score: 25.3 coord: 13..39 e-value: 0.0068 score: 25.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 14..38 e-value: 2.5E-7 score: 30.5 coord: 150..174 e-value: 1.2E-4 score: 21.8
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 11.413015
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 13.065497
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 1.3E-25 score: 91.7
None	No IPR available	PANTHER	PTHR12620:SF35	SPLICING FACTOR U2AF SMALL SUBUNIT A	coord: 1..210
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 9.51308E-56 score: 172.163
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 32..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G000130.1	CmaCh09G000130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0030628	pre-mRNA 3'-splice site binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding