CmaCh08G012820 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G012820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr08: 7773651 .. 7773962 (-)
RNA-Seq ExpressionCmaCh08G012820
SyntenyCmaCh08G012820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATGATGAAGAGGACCCTTCTTCTCTTTGCCGTCTTCTTGCTGCTCGTGTTTGCAGATGCTACCATGCACAGCGTGGTTAAGAAGAAAGATGCGCGTAAGCTAGCTCAAAGCTTTAGTGGTCAAATCCCTGAAACGGGAGTGTTCAGTGGTGTGAATGATTCTGAAGATGTTGATGTTTCTCAAGGTGACGTTGGCATGAACAACGAAGATGAGGACAATGAAAATCTTGGTTATAAAAACTACGGAAAGGGCTCAGATACCGAAACTCACCGTTATTTCTCAAGCGAGAAGCCATACAGACCCTAA

mRNA sequence

ATGACTATGATGAAGAGGACCCTTCTTCTCTTTGCCGTCTTCTTGCTGCTCGTGTTTGCAGATGCTACCATGCACAGCGTGGTTAAGAAGAAAGATGCGCGTAAGCTAGCTCAAAGCTTTAGTGGTCAAATCCCTGAAACGGGAGTGTTCAGTGGTGTGAATGATTCTGAAGATGTTGATGTTTCTCAAGGTGACGTTGGCATGAACAACGAAGATGAGGACAATGAAAATCTTGGTTATAAAAACTACGGAAAGGGCTCAGATACCGAAACTCACCGTTATTTCTCAAGCGAGAAGCCATACAGACCCTAA

Coding sequence (CDS)

ATGACTATGATGAAGAGGACCCTTCTTCTCTTTGCCGTCTTCTTGCTGCTCGTGTTTGCAGATGCTACCATGCACAGCGTGGTTAAGAAGAAAGATGCGCGTAAGCTAGCTCAAAGCTTTAGTGGTCAAATCCCTGAAACGGGAGTGTTCAGTGGTGTGAATGATTCTGAAGATGTTGATGTTTCTCAAGGTGACGTTGGCATGAACAACGAAGATGAGGACAATGAAAATCTTGGTTATAAAAACTACGGAAAGGGCTCAGATACCGAAACTCACCGTTATTTCTCAAGCGAGAAGCCATACAGACCCTAA

Protein sequence

MTMMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQSFSGQIPETGVFSGVNDSEDVDVSQGDVGMNNEDEDNENLGYKNYGKGSDTETHRYFSSEKPYRP
Homology
BLAST of CmaCh08G012820 vs. ExPASy TrEMBL
Match: A0A5D3BV16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00430 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-20
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 3   MMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQ-SFSGQIPETGVFSGVNDSE--DV 62
           MMKR LLLFAV LLL+ ADA M +VV+KK ARKLAQ S   +IP+  VF+  N+ E    
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKKT 60

Query: 63  DVSQGDVGMNN-EDEDNE----NLGYKNYGKGSDTETHRYFSSEKPYRP 104
           DV+  DV  NN +++DNE    NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  DVAPDDVVANNIDNDDNEDDDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

BLAST of CmaCh08G012820 vs. ExPASy TrEMBL
Match: A0A0A0KGD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.9e-20
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 0

Query: 1   MTMMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQSFS-GQIPETGVFSGVNDS--E 60
           M MMKR LLLFA  LLL+ ADA    +V+KK ARKLAQ FS  + P+ GVF+  N+S  E
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLE 60

Query: 61  DVDVSQGDVGMNN-----EDEDNENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           + DV+  DV  NN      ++D+ NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  NTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

BLAST of CmaCh08G012820 vs. NCBI nr
Match: KAG6594018.1 (hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026358.1 hypothetical protein SDJN02_12860, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.5 bits (441), Expect = 4.8e-40
Identity = 93/104 (89.42%), Postives = 97/104 (93.27%), Query Frame = 0

Query: 1   MTMMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQSFSGQIPETGVFSGVNDSEDVD 60
           MTMMKRTLLLFAVFLLLVF DATMHSV+KKKDARKLAQSFSGQIP+TGVF GV  SED D
Sbjct: 1   MTMMKRTLLLFAVFLLLVFTDATMHSVIKKKDARKLAQSFSGQIPKTGVFGGVKYSEDAD 60

Query: 61  VSQGDVGM-NNEDEDNENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           V+Q DVGM NNEDED+ENLGYKNYGKGSDTETHRYFSSEKPYRP
Sbjct: 61  VAQADVGMNNNEDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104

BLAST of CmaCh08G012820 vs. NCBI nr
Match: KAG6575119.1 (hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 8.5e-21
Identity = 69/110 (62.73%), Postives = 77/110 (70.00%), Query Frame = 0

Query: 3   MMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQSFSGQ-IPETGVFSGV--NDSEDV 62
           MMK+ L+L  V LLLV  DA MH VV+KK ARKLA+S  GQ  PET VFSGV  +  EDV
Sbjct: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60

Query: 63  ------DVSQGDVGMNNEDEDNENLGYKNYGKGSDTETHRYFSSEKPYRP 104
                 DV       NN D+D+ENLGYKNYGKGSDTETHRYFSS+KPY P
Sbjct: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110

BLAST of CmaCh08G012820 vs. NCBI nr
Match: KAG7013689.1 (hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 8.5e-21
Identity = 69/110 (62.73%), Postives = 77/110 (70.00%), Query Frame = 0

Query: 3   MMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQSFSGQ-IPETGVFSGV--NDSEDV 62
           MMK+ L+L  V LLLV  DA MH VV+KK ARKLA+S  GQ  PET VFSGV  +  EDV
Sbjct: 21  MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 80

Query: 63  ------DVSQGDVGMNNEDEDNENLGYKNYGKGSDTETHRYFSSEKPYRP 104
                 DV       NN D+D+ENLGYKNYGKGSDTETHRYFSS+KPY P
Sbjct: 81  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 130

BLAST of CmaCh08G012820 vs. NCBI nr
Match: TYK02960.1 (uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-20
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 3   MMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQ-SFSGQIPETGVFSGVNDSE--DV 62
           MMKR LLLFAV LLL+ ADA M +VV+KK ARKLAQ S   +IP+  VF+  N+ E    
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKKT 60

Query: 63  DVSQGDVGMNN-EDEDNE----NLGYKNYGKGSDTETHRYFSSEKPYRP 104
           DV+  DV  NN +++DNE    NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  DVAPDDVVANNIDNDDNEDDDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

BLAST of CmaCh08G012820 vs. NCBI nr
Match: XP_004150985.1 (uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical protein Csa_021763 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-19
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 0

Query: 1   MTMMKRTLLLFAVFLLLVFADATMHSVVKKKDARKLAQSFS-GQIPETGVFSGVNDS--E 60
           M MMKR LLLFA  LLL+ ADA    +V+KK ARKLAQ FS  + P+ GVF+  N+S  E
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLE 60

Query: 61  DVDVSQGDVGMNN-----EDEDNENLGYKNYGKGSDTETHRYFSSEKPYRP 104
           + DV+  DV  NN      ++D+ NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  NTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BV162.0e-2063.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KGD65.9e-2060.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6594018.14.8e-4089.42hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575119.18.5e-2162.73hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7013689.18.5e-2162.73hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyro... [more]
TYK02960.14.2e-2063.30uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa][more]
XP_004150985.11.2e-1960.36uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G012820.1CmaCh08G012820.1mRNA