CmaCh08G012410 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G012410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	multiple organellar RNA editing factor 3, mitochondrial-like
Location	Cma_Chr08: 7597484 .. 7599964 (+)
RNA-Seq Expression	CmaCh08G012410
Synteny	CmaCh08G012410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTTTGTTCATACAAACATAAAAATAATAAACATGTTTATTCGTGGGCAATACGTACAGAGTAATATTAGAGTGACAAGACAGCCTCAAATAATCCCCAATTCATTCAATCTTCCGGTTCGATTTCAAACTTCGGGGTCCGGATACTCCCCACTCGACGATCCTTCTCCCAATTGGAGCAATCGACCTCCAGAAGAGACGATACTCCTTCATGGCTGCGATTACGAGCACTGGCTGATTGTGATTGAGTTTCCAAATGATCCGAAACCAACGGAAGAGGAGATGGTGGATTCTTATGTCGAAACTCTTGCTGCTGTAGTCGGCAGGCTTCGGATTAAAGCGGATTGTAAATGGATTACTTCTCGGTATGTTTTTGCGTGCATTTTCTTCTCTGTTGATTTTAGGTTTTTCGCTTTCTTTTGATTTTCAGTGAGGAAGAGGCGAAGAATGAAATATACTCTGTCAGTACAACTACCTATACTGGCTTTGGTGCCTTGATTCGGGAAGAGCTTTCTTACAAGGCGATTTTGTGCGTATTCGTGGTATGGTTAGATCAAGGAACCCTAGGAAGCGGATTTACTCGTCTTGTAGATATTGGAATTGTGTCGATTATTTAGATTGCAATTGAAGATTGAAGCGTAGTTTTGAGTCAATCGCATGAATATGTTTGATGAAAGTTCCCATACAAATTTGAATGGTTAATAAATTCTCCTTTCTGTTTTGAAGTTTGCTGCAGAATTGACTGGTGTTTTAGTTTGATAATCTGTGTGTTGCTAGCATTAAGGTTTGGCGTTTGTGTTATCTTGTGATGAATTAGCCCAATGATCAACCAGTTTATAGGAAATGCTACCTACTTAGTTTCTTTCCCGATTAAAGGTAGTAAGTCAGGTCCTCTGTGATATTAGTTAAGGTACGTGTTGGCTCAAACACTAGTCTTTTGTAAAGAACAAGATTAAGGAGCCTTGTCAATCAGATTTTCTCATCTTGAAACCTTGGATTATAATTGATGATTGAAAGTGTGCGTTTGAGCTGAAGCACGCAATTGTTGTTTGCTTTTGAATCTACTCGATCAACTCGATTTTAGTTTGATTGTTTTGCGTGTTATACCACGATGAATGTTTGACGTTTGCATTATTTTGTGATGATTTCTATTTAGCTTTTGTAAAGAACAATATTGTCATCTGACTTTGAGCGAAATGAAACAGAATTGGCAGGCGTTCTATGGGTTTTACCTGATTCATATCTCGAATTCCAAACACAGGTTATGGAGATGATTTACTCTTCTAACGCTATCGAATTGATTGTAATTGAAACTGAAACCTGTGGATATATCAAATCAATGCTCATTGTTTGTACCAATCATTCATCTTGATTTCAGGTGATCGGTTTATTGTTGGAAAGGTTATCGCGAGAGACAACAAAGTGGTAGAAATAGGCCTCGTCCACAGTACGATAGATGTCGAGAAACTGTGCATATTGAACGGAGGCAACCAATATTGAGGATTATTGGGAGAGATGTTCCACATTGGCTAATTAAGGGAAATATCGTATACTTCAGGTAAAAAATACTATTTCCATTGGTAAGAGACTTTCTAAAGAAATTTATGTCTTAAAGTGAACAATATCATACCATTGTGATGGGTCGTGGTTCCTAACATCCAGTTCATGTATACAAAGCTTGGGTCAAGACCATAGAAACCGGAATAGTCAAAATTCAGATCGAAATGGAGTCGGAGATATCTTAGGAAATCTAGGCGAGTTTAATTGAAGCAATCAGGGATTGATGGATGCTTTGAGTATCTATTGACACCTTAATCCATGAAGTCTAGGCAGTCAGGTACGAGATTTCTATTAGTTCTTAATGCATTTAGATCAAGTCTAGCACTCACATATCTAGAATGAAAATATCTTCGCCGACTACAACCAATTGCACTTCTATGTTTCAATTTCATGTTTTTGTTCTTTTGCAGTAAAATAAAATTATTAAAAAAAGAAAAGAAAAAAAGAGGGACGGATCAAAATTAGACACACATTCATTCTTCTGACGATAGAACTGAATTAAATAATTGTGGAAAACAGTGAATTTTTTGTATTTATATTCGTATACTCCAAAAAAGAAAATAATAAAATAAATAAAAAGGGTGTGTTTGTTATACAACTCATCATTCATCTTCTTCCCTTAACAGTTCAAGGATGATTATGTCATGAACTCATCAACTTGCCACTGCCACAATTCTCTTCCTTCAACGTTTGGATAGAACCTTACGTGTGTGTGTATATATATATTTAGATTTATCAATTATGAATTTTATAATATGTTATGAGTTCCAAAAATGCAGATTTTAGGATCGTTTTTTACTTATAAATTCATGATATTGTCTTTAAGTAGCCAATTTGAGACTTAAAGTACAAAGTAGAGCATCCTCAAAGGCTTCATTTTCTAGAGCTATCAAATGGTCTCTCCATAAACGAGATTCGAC

mRNA sequence

GTATTTTGTTCATACAAACATAAAAATAATAAACATGTTTATTCGTGGGCAATACGTACAGAGTAATATTAGAGTGACAAGACAGCCTCAAATAATCCCCAATTCATTCAATCTTCCGGTTCGATTTCAAACTTCGGGGTCCGGATACTCCCCACTCGACGATCCTTCTCCCAATTGGAGCAATCGACCTCCAGAAGAGACGATACTCCTTCATGGCTGCGATTACGAGCACTGGCTGATTGTGATTGAGTTTCCAAATGATCCGAAACCAACGGAAGAGGAGATGGTGGATTCTTATGTCGAAACTCTTGCTGCTGTAGTCGGCAGGCTTCGGATTAAAGCGGATTGTAAATGGATTACTTCTCGTGAGGAAGAGGCGAAGAATGAAATATACTCTGTCAGTACAACTACCTATACTGGCTTTGGTGCCTTGATTCGGGAAGAGCTTTCTTACAAGGCGATTTTAACAATATTGTCATCTGACTTTGAGCGAAATGAAACAGAATTGGCAGGCGTTCTATGGGTTTTACCTGATTCATATCTCGAATTCCAAACACAGGTTATGGAGATGATTTACTCTTCTAACGCTATCGAATTGATTGTAATTGAAACTGAAACCTGTGGATATATCAAATCAATGCTCATTGTGATCGGTTTATTGTTGGAAAGGTTATCGCGAGAGACAACAAAGTGGTAGAAATAGGCCTCGTCCACAGTACGATAGATGTCGAGAAACTGTGCATATTGAACGGAGGCAACCAATATTGAGGATTATTGGGAGAGATGTTCCACATTGGCTAATTAAGGGAAATATCGTATACTTCAGTTCATGTATACAAAGCTTGGGTCAAGACCATAGAAACCGGAATAGTCAAAATTCAGATCGAAATGGAGTCGGAGATATCTTAGGAAATCTAGGCGAGTTTAATTGAAGCAATCAGGGATTGATGGATGCTTTGAGTATCTATTGACACCTTAATCCATGAAGTCTAGGCAGTCAGTTCAAGGATGATTATGTCATGAACTCATCAACTTGCCACTGCCACAATTCTCTTCCTTCAACGTTTGGATAGAACCTTACGTGTGTGTGTATATATATATTTAGATTTATCAATTATGAATTTTATAATATGTTATGAGTTCCAAAAATGCAGATTTTAGGATCGTTTTTTACTTATAAATTCATGATATTGTCTTTAAGTAGCCAATTTGAGACTTAAAGTACAAAGTAGAGCATCCTCAAAGGCTTCATTTTCTAGAGCTATCAAATGGTCTCTCCATAAACGAGATTCGAC

Coding sequence (CDS)

ATGTTTATTCGTGGGCAATACGTACAGAGTAATATTAGAGTGACAAGACAGCCTCAAATAATCCCCAATTCATTCAATCTTCCGGTTCGATTTCAAACTTCGGGGTCCGGATACTCCCCACTCGACGATCCTTCTCCCAATTGGAGCAATCGACCTCCAGAAGAGACGATACTCCTTCATGGCTGCGATTACGAGCACTGGCTGATTGTGATTGAGTTTCCAAATGATCCGAAACCAACGGAAGAGGAGATGGTGGATTCTTATGTCGAAACTCTTGCTGCTGTAGTCGGCAGGCTTCGGATTAAAGCGGATTGTAAATGGATTACTTCTCGTGAGGAAGAGGCGAAGAATGAAATATACTCTGTCAGTACAACTACCTATACTGGCTTTGGTGCCTTGATTCGGGAAGAGCTTTCTTACAAGGCGATTTTAACAATATTGTCATCTGACTTTGAGCGAAATGAAACAGAATTGGCAGGCGTTCTATGGGTTTTACCTGATTCATATCTCGAATTCCAAACACAGGTTATGGAGATGATTTACTCTTCTAACGCTATCGAATTGATTGTAATTGAAACTGAAACCTGTGGATATATCAAATCAATGCTCATTGTGATCGGTTTATTGTTGGAAAGGTTATCGCGAGAGACAACAAAGTGGTAG

Protein sequence

MFIRGQYVQSNIRVTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPNDPKPTEEEMVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAILTILSSDFERNETELAGVLWVLPDSYLEFQTQVMEMIYSSNAIELIVIETETCGYIKSMLIVIGLLLERLSRETTKW

Homology

[Close]

BLAST of CmaCh08G012410 vs. ExPASy Swiss-Prot
Match: Q84JZ6 (Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF3 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-41
Identity = 91/145 (62.76%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 27  LPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPNDPKPTEEEMVD 86
           +  R +TSGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EF  DPKPTEEEM++
Sbjct: 57  ISTRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKPTEEEMIN 116

Query: 87  SYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAILTI 146
           SYV+TL +V+G       C      EEEAK +IYSV T+TYTGFGALI EELS K     
Sbjct: 117 SYVKTLTSVLG-------C------EEEAKKKIYSVCTSTYTGFGALISEELSCKV---- 174

Query: 147 LSSDFERNETELAGVLWVLPDSYLE 172
                      L GVLWVLPDSYL+
Sbjct: 177 ---------KALPGVLWVLPDSYLD 174

[Close]

BLAST of CmaCh08G012410 vs. ExPASy Swiss-Prot
Match: Q9LKA5 (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.6e-30
Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 39  SPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPNDPKPTEEEMVDSYVETLAAVVGR 98
           S L+DP+PNWSNRPP+ETILL GCD+EHWL+V+E P   +PT +E++DSY++TLA +VG 
Sbjct: 72  SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVG- 131

Query: 99  LRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAILTILSSDFERNETEL 158
                        E+EA+ +IYSVST  Y  FGAL+ E+LS+K               EL
Sbjct: 132 ------------SEDEARMKIYSVSTRCYYAFGALVSEDLSHKL-------------KEL 181

Query: 159 AGVLWVLPDSYLEFQTQ 176
           + V WVLPDSYL+ + +
Sbjct: 192 SNVRWVLPDSYLDVRNK 181

[Close]

BLAST of CmaCh08G012410 vs. ExPASy Swiss-Prot
Match: Q38732 (DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 65/147 (44.22%), Postives = 82/147 (55.78%), Query Frame = 0


Query: 29  VRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPNDPKPTEEEMVDSY 88
           VR  T G  YS   + + N S     ETI+L GCDY HWLIV+EFP DP PT E+M+D+Y
Sbjct: 53  VRALTDGE-YSSRRNNNNNNSGE-ERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTY 112

Query: 89  VETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAILTILS 148
           + TLA V+G +             EEAK  +Y+ STTTYTGF   + EE S K       
Sbjct: 113 LNTLATVLGSM-------------EEAKKNMYAFSTTTYTGFQCTVTEETSEKF------ 171

Query: 149 SDFERNETELAGVLWVLPDSYLEFQTQ 176
                    L GVLWVLPDSY++ + +
Sbjct: 173 -------KGLPGVLWVLPDSYIDVKNK 171

[Close]

BLAST of CmaCh08G012410 vs. ExPASy Swiss-Prot
Match: Q9LPZ1 (Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF9 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-23
Identity = 62/147 (42.18%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 29  VRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPNDPKPTEEEMVDSY 88
           V+  T  S YS     S   ++    ETI+L GCDY HWLIV+EFP DP P+ ++M+D+Y
Sbjct: 57  VKAATVDSDYS-----SKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTY 116

Query: 89  VETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAILTILS 148
           + TLA V+G +             EEAK  +Y+ STTTYTGF   I EE S K       
Sbjct: 117 LNTLATVLGSM-------------EEAKKNMYAFSTTTYTGFQCTIDEETSEKF------ 172

Query: 149 SDFERNETELAGVLWVLPDSYLEFQTQ 176
                    L GVLWVLPDSY++ + +
Sbjct: 177 -------KGLPGVLWVLPDSYIDVKNK 172

[Close]

BLAST of CmaCh08G012410 vs. ExPASy Swiss-Prot
Match: O22793 (Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF2 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 65/148 (43.92%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 25  FNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETI-LLHGCDYEHWLIVIEFPNDPKPTEEE 84
           F++      SGS YSPL+  S N+S+RPP E   L  GCDYEHWLIV++ P     T+++
Sbjct: 45  FSIRCGANRSGSTYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQ 104

Query: 85  MVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAI 144
           M+D Y++TLA VVG              EEEAK  IY+VS   Y GFG  I EE S K  
Sbjct: 105 MIDCYIQTLAKVVG-------------SEEEAKKRIYNVSCERYLGFGCEIDEETSTKL- 164

Query: 145 LTILSSDFERNETELAGVLWVLPDSYLE 172
                         L GVL+VLPDSY++
Sbjct: 165 ------------EGLPGVLFVLPDSYVD 165

[Close]

BLAST of CmaCh08G012410 vs. ExPASy TrEMBL
Match: A0A6J1KHJ4 (multiple organellar RNA editing factor 3, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111494439 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MFIRGQYVQSNIRVTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLH 60
           MFIRGQYVQSNIRVTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLH
Sbjct: 1   MFIRGQYVQSNIRVTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLH 60

Query: 61  GCDYEHWLIVIEFPNDPKPTEEEMVDSYVETLAAVVGRLRIKADCK 107
           GCDYEHWLIVIEFPNDPKPTEEEMVDSYVETLAAVVGRLRIKAD +
Sbjct: 61  GCDYEHWLIVIEFPNDPKPTEEEMVDSYVETLAAVVGRLRIKADLR 106

[Close]

BLAST of CmaCh08G012410 vs. ExPASy TrEMBL
Match: A0A6J1L4U9 (multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111499149 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 6.0e-54
Identity = 112/156 (71.79%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 16  RQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPN 75
           RQ QIIPNSFN PVRF+TSGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EFPN
Sbjct: 40  RQSQIIPNSFNFPVRFRTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPN 99

Query: 76  DPKPTEEEMVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIR 135
           DPKP+EEEMV+SYV+TLAAVVG              EEEAK +IYSVSTTTYTGFGALI 
Sbjct: 100 DPKPSEEEMVNSYVKTLAAVVG-------------SEEEAKKKIYSVSTTTYTGFGALIS 159

Query: 136 EELSYKAILTILSSDFERNETELAGVLWVLPDSYLE 172
           EELSYK               EL GVLWVLPDSYL+
Sbjct: 160 EELSYKV-------------KELPGVLWVLPDSYLD 169

[Close]

BLAST of CmaCh08G012410 vs. ExPASy TrEMBL
Match: A0A6J1H5X4 (multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111460412 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-53
Identity = 111/156 (71.15%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 16  RQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPN 75
           RQ +IIPNSFN PVRF+TSGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EFPN
Sbjct: 42  RQSRIIPNSFNFPVRFRTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPN 101

Query: 76  DPKPTEEEMVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIR 135
           DPKP+EEEMV+SYV+TLAAVVG              EEEAK +IYSVSTTTYTGFGALI 
Sbjct: 102 DPKPSEEEMVNSYVKTLAAVVG-------------SEEEAKKKIYSVSTTTYTGFGALIS 161

Query: 136 EELSYKAILTILSSDFERNETELAGVLWVLPDSYLE 172
           EELSYK               EL GVLWVLPDSYL+
Sbjct: 162 EELSYKV-------------KELPGVLWVLPDSYLD 171

[Close]

BLAST of CmaCh08G012410 vs. ExPASy TrEMBL
Match: A0A6J1C9B1 (multiple organellar RNA editing factor 3, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111009569 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 8.7e-53
Identity = 108/158 (68.35%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 14  VTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEF 73
           + R  QI PN+FNLP+RF+TSGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EF
Sbjct: 41  INRLGQIAPNAFNLPIRFKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEF 100

Query: 74  PNDPKPTEEEMVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGAL 133
           PNDPKP+EEEMV+SY++TLAAVVG              EEEAK +IYSVSTTTYTGFGAL
Sbjct: 101 PNDPKPSEEEMVNSYIKTLAAVVG-------------SEEEAKKKIYSVSTTTYTGFGAL 160

Query: 134 IREELSYKAILTILSSDFERNETELAGVLWVLPDSYLE 172
           I EELSYK               EL GVLWVLPDSYL+
Sbjct: 161 ISEELSYKV-------------KELPGVLWVLPDSYLD 172

[Close]

BLAST of CmaCh08G012410 vs. ExPASy TrEMBL
Match: A0A0A0KCH1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318670 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.1e-52
Identity = 109/158 (68.99%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 14  VTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEF 73
           + RQ QIIP SFNLP+RF+ SGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EF
Sbjct: 46  LNRQDQIIPASFNLPIRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVLEF 105

Query: 74  PNDPKPTEEEMVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGAL 133
           PNDPKP+EEEMV++YV+TLAAVVG              EEEAK +IYSVSTTTYTGFGAL
Sbjct: 106 PNDPKPSEEEMVNTYVKTLAAVVG-------------SEEEAKKKIYSVSTTTYTGFGAL 165

Query: 134 IREELSYKAILTILSSDFERNETELAGVLWVLPDSYLE 172
           I EELSYK               EL GVLWVLPDSYL+
Sbjct: 166 ISEELSYKV-------------KELPGVLWVLPDSYLD 177

[Close]

BLAST of CmaCh08G012410 vs. NCBI nr
Match: XP_023000155.1 (multiple organellar RNA editing factor 3, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 222.6 bits (566), Expect = 3.3e-54
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MFIRGQYVQSNIRVTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLH 60
           MFIRGQYVQSNIRVTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLH
Sbjct: 1   MFIRGQYVQSNIRVTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLH 60

Query: 61  GCDYEHWLIVIEFPNDPKPTEEEMVDSYVETLAAVVGRLRIKADCK 107
           GCDYEHWLIVIEFPNDPKPTEEEMVDSYVETLAAVVGRLRIKAD +
Sbjct: 61  GCDYEHWLIVIEFPNDPKPTEEEMVDSYVETLAAVVGRLRIKADLR 106

[Close]

BLAST of CmaCh08G012410 vs. NCBI nr
Match: XP_023514439.1 (multiple organellar RNA editing factor 3, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.2 bits (565), Expect = 4.3e-54
Identity = 114/160 (71.25%), Postives = 126/160 (78.75%), Query Frame = 0


Query: 12  IRVTRQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVI 71
           I +T  P  + N FNLPVRF+T GSGYSPL+DPSPNW NRPP+ETILL GC+YEHWLIV+
Sbjct: 78  ILITVLPGSLLNPFNLPVRFKTWGSGYSPLNDPSPNWINRPPKETILLDGCEYEHWLIVM 137

Query: 72  EFPNDPKPTEEEMVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFG 131
           EFPN+ KPTEEEMV+SY++TLAAVVG              EEEAK EIYSVSTTTYTGFG
Sbjct: 138 EFPNEQKPTEEEMVNSYIKTLAAVVG-------------SEEEAKKEIYSVSTTTYTGFG 197

Query: 132 ALIREELSYKAILTILSSDFERNETELAGVLWVLPDSYLE 172
           ALIREELSYKAIL        RNETELAGVLWVLPDSYL+
Sbjct: 198 ALIREELSYKAILC-------RNETELAGVLWVLPDSYLD 217

[Close]

BLAST of CmaCh08G012410 vs. NCBI nr
Match: XP_023006413.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita maxima])

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-53
Identity = 112/156 (71.79%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 16  RQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPN 75
           RQ QIIPNSFN PVRF+TSGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EFPN
Sbjct: 40  RQSQIIPNSFNFPVRFRTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPN 99

Query: 76  DPKPTEEEMVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIR 135
           DPKP+EEEMV+SYV+TLAAVVG              EEEAK +IYSVSTTTYTGFGALI 
Sbjct: 100 DPKPSEEEMVNSYVKTLAAVVG-------------SEEEAKKKIYSVSTTTYTGFGALIS 159

Query: 136 EELSYKAILTILSSDFERNETELAGVLWVLPDSYLE 172
           EELSYK               EL GVLWVLPDSYL+
Sbjct: 160 EELSYKV-------------KELPGVLWVLPDSYLD 169

[Close]

BLAST of CmaCh08G012410 vs. NCBI nr
Match: XP_022959433.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 3.6e-53
Identity = 111/156 (71.15%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 16  RQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPN 75
           RQ +IIPNSFN PVRF+TSGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EFPN
Sbjct: 42  RQSRIIPNSFNFPVRFRTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPN 101

Query: 76  DPKPTEEEMVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIR 135
           DPKP+EEEMV+SYV+TLAAVVG              EEEAK +IYSVSTTTYTGFGALI 
Sbjct: 102 DPKPSEEEMVNSYVKTLAAVVG-------------SEEEAKKKIYSVSTTTYTGFGALIS 161

Query: 136 EELSYKAILTILSSDFERNETELAGVLWVLPDSYLE 172
           EELSYK               EL GVLWVLPDSYL+
Sbjct: 162 EELSYKV-------------KELPGVLWVLPDSYLD 171

[Close]

BLAST of CmaCh08G012410 vs. NCBI nr
Match: KAG7013654.1 (Multiple organellar RNA editing factor 3, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.2 bits (557), Expect = 3.6e-53
Identity = 111/156 (71.15%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 16  RQPQIIPNSFNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPN 75
           RQ +IIPNSFN PVRF+TSGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EFPN
Sbjct: 41  RQSRIIPNSFNFPVRFRTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPN 100

Query: 76  DPKPTEEEMVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIR 135
           DPKP+EEEMV+SYV+TLAAVVG              EEEAK +IYSVSTTTYTGFGALI 
Sbjct: 101 DPKPSEEEMVNSYVKTLAAVVG-------------SEEEAKKKIYSVSTTTYTGFGALIS 160

Query: 136 EELSYKAILTILSSDFERNETELAGVLWVLPDSYLE 172
           EELSYK               EL GVLWVLPDSYL+
Sbjct: 161 EELSYKV-------------KELPGVLWVLPDSYLD 170

[Close]

BLAST of CmaCh08G012410 vs. TAIR 10
Match: AT3G06790.2 (plastid developmental protein DAG, putative )

HSP 1 Score: 171.4 bits (433), Expect = 8.1e-43
Identity = 91/145 (62.76%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 27  LPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPNDPKPTEEEMVD 86
           +  R +TSGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EF  DPKPTEEEM++
Sbjct: 57  ISTRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKPTEEEMIN 116

Query: 87  SYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAILTI 146
           SYV+TL +V+G       C      EEEAK +IYSV T+TYTGFGALI EELS K     
Sbjct: 117 SYVKTLTSVLG-------C------EEEAKKKIYSVCTSTYTGFGALISEELSCKV---- 174

Query: 147 LSSDFERNETELAGVLWVLPDSYLE 172
                      L GVLWVLPDSYL+
Sbjct: 177 ---------KALPGVLWVLPDSYLD 174

[Close]

BLAST of CmaCh08G012410 vs. TAIR 10
Match: AT3G06790.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-42
Identity = 90/145 (62.07%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 27  LPVRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPNDPKPTEEEMVD 86
           +  R +TSGSGYSPL+DPSPNWSNRPP+ETILL GCDYEHWLIV+EF  DPKPTEEEM++
Sbjct: 57  ISTRPKTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEF-TDPKPTEEEMIN 116

Query: 87  SYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAILTI 146
           SYV+TL +V+G         W    +EEAK +IYSV T+TYTGFGALI EELS K     
Sbjct: 117 SYVKTLTSVLG---------W----QEEAKKKIYSVCTSTYTGFGALISEELSCKV---- 174

Query: 147 LSSDFERNETELAGVLWVLPDSYLE 172
                      L GVLWVLPDSYL+
Sbjct: 177 ---------KALPGVLWVLPDSYLD 174

[Close]

BLAST of CmaCh08G012410 vs. TAIR 10
Match: AT3G15000.1 (cobalt ion binding )

HSP 1 Score: 132.1 bits (331), Expect = 5.4e-31
Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 39  SPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPNDPKPTEEEMVDSYVETLAAVVGR 98
           S L+DP+PNWSNRPP+ETILL GCD+EHWL+V+E P   +PT +E++DSY++TLA +VG 
Sbjct: 72  SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVG- 131

Query: 99  LRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAILTILSSDFERNETEL 158
                        E+EA+ +IYSVST  Y  FGAL+ E+LS+K               EL
Sbjct: 132 ------------SEDEARMKIYSVSTRCYYAFGALVSEDLSHKL-------------KEL 181

Query: 159 AGVLWVLPDSYLEFQTQ 176
           + V WVLPDSYL+ + +
Sbjct: 192 SNVRWVLPDSYLDVRNK 181

[Close]

BLAST of CmaCh08G012410 vs. TAIR 10
Match: AT1G11430.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-24
Identity = 62/147 (42.18%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 29  VRFQTSGSGYSPLDDPSPNWSNRPPEETILLHGCDYEHWLIVIEFPNDPKPTEEEMVDSY 88
           V+  T  S YS     S   ++    ETI+L GCDY HWLIV+EFP DP P+ ++M+D+Y
Sbjct: 57  VKAATVDSDYS-----SKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTY 116

Query: 89  VETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAILTILS 148
           + TLA V+G +             EEAK  +Y+ STTTYTGF   I EE S K       
Sbjct: 117 LNTLATVLGSM-------------EEAKKNMYAFSTTTYTGFQCTIDEETSEKF------ 172

Query: 149 SDFERNETELAGVLWVLPDSYLEFQTQ 176
                    L GVLWVLPDSY++ + +
Sbjct: 177 -------KGLPGVLWVLPDSYIDVKNK 172

[Close]

BLAST of CmaCh08G012410 vs. TAIR 10
Match: AT2G33430.1 (differentiation and greening-like 1 )

HSP 1 Score: 105.1 bits (261), Expect = 7.1e-23
Identity = 65/148 (43.92%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 25  FNLPVRFQTSGSGYSPLDDPSPNWSNRPPEETI-LLHGCDYEHWLIVIEFPNDPKPTEEE 84
           F++      SGS YSPL+  S N+S+RPP E   L  GCDYEHWLIV++ P     T+++
Sbjct: 45  FSIRCGANRSGSTYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQ 104

Query: 85  MVDSYVETLAAVVGRLRIKADCKWITSREEEAKNEIYSVSTTTYTGFGALIREELSYKAI 144
           M+D Y++TLA VVG              EEEAK  IY+VS   Y GFG  I EE S K  
Sbjct: 105 MIDCYIQTLAKVVG-------------SEEEAKKRIYNVSCERYLGFGCEIDEETSTKL- 164

Query: 145 LTILSSDFERNETELAGVLWVLPDSYLE 172
                         L GVL+VLPDSY++
Sbjct: 165 ------------EGLPGVLFVLPDSYVD 165

The following BLAST results are available for this feature:

BLAST of CmaCh08G012410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JZ6	1.1e-41	62.76	Multiple organellar RNA editing factor 3, mitochondrial OS=Arabidopsis thaliana ...	[more]
Q9LKA5	7.6e-30	48.91	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido...	[more]
Q38732	1.1e-23	44.22	DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1	[more]
Q9LPZ1	3.1e-23	42.18	Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana ...	[more]
O22793	1.0e-21	43.92	Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of CmaCh08G012410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KHJ4	1.6e-54	98.11	multiple organellar RNA editing factor 3, mitochondrial-like OS=Cucurbita maxima...	[more]
A0A6J1L4U9	6.0e-54	71.79	multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita maxima OX=3...	[more]
A0A6J1H5X4	1.8e-53	71.15	multiple organellar RNA editing factor 3, mitochondrial OS=Cucurbita moschata OX...	[more]
A0A6J1C9B1	8.7e-53	68.35	multiple organellar RNA editing factor 3, mitochondrial-like OS=Momordica charan...	[more]
A0A0A0KCH1	1.1e-52	68.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318670 PE=4 SV=1	[more]

BLAST of CmaCh08G012410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000155.1	3.3e-54	98.11	multiple organellar RNA editing factor 3, mitochondrial-like [Cucurbita maxima]	[more]
XP_023514439.1	4.3e-54	71.25	multiple organellar RNA editing factor 3, mitochondrial-like [Cucurbita pepo sub...	[more]
XP_023006413.1	1.2e-53	71.79	multiple organellar RNA editing factor 3, mitochondrial [Cucurbita maxima]	[more]
XP_022959433.1	3.6e-53	71.15	multiple organellar RNA editing factor 3, mitochondrial [Cucurbita moschata]	[more]
KAG7013654.1	3.6e-53	71.15	Multiple organellar RNA editing factor 3, mitochondrial [Cucurbita argyrosperma ...	[more]

BLAST of CmaCh08G012410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06790.2	8.1e-43	62.76	plastid developmental protein DAG, putative	[more]
AT3G06790.1	1.1e-42	62.07	plastid developmental protein DAG, putative	[more]
AT3G15000.1	5.4e-31	48.91	cobalt ion binding	[more]
AT1G11430.1	2.2e-24	42.18	plastid developmental protein DAG, putative	[more]
AT2G33430.1	7.1e-23	43.92	differentiation and greening-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED	coord: 17..171
None	No IPR available	PANTHER	PTHR31346:SF1	MULTIPLE ORGANELLAR RNA EDITING FACTOR 3, MITOCHONDRIAL	coord: 17..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G012410.1	CmaCh08G012410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016554	cytidine to uridine editing
biological_process	GO:0080156	mitochondrial mRNA modification
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005739	mitochondrion