CmaCh08G009890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G009890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA polymerase sigma factor
Location	Cma_Chr08: 6172878 .. 6181716 (+)
RNA-Seq Expression	CmaCh08G009890
Synteny	CmaCh08G009890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTCTCTCTCACAAGTGAGTTGGGGGAGGCAAAATGGGAACCTCTTATCCATTGTTTTATCAACAAAGCCTCCAAAAGCCTATTTACCCACACAAGTTTTCCTCCCCACTCTTCTTCTCTCAGCCCACTCTCCATTCCTTCTTCTTCTTCTTCTTCTTCTTCACCAATCACCTCTTCCATCCCCTTCATCAATCAATGACACCCTTTTCATATGCTTCACATTTCCCCTTCTGGGTCGCCGCCCCAGTTCAATTTTGAGTGATTCCTTCATTTATGTCCGCCATAGTTGCAGATTAGCAGAACCCAGTTGGAGAACGAAGAACAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTGTGAGTGTTTTACTCTCTAATTCTCTCTTTTCCTACTTTAAATTGGTATTTTGCTGTTTTTGATGTTTTGGGTTGCTTATTTGCCTAGCTGGGCCAAAATGGCTTGTGTTTAGTTGGATTGTTTGAAATGTTGTCCTGAGATTCTATGTTTTAGGTGGCCATTATGTGTGCCAGGATTTACAAATGGTGCTGGTTTTGATGTTGTTATTGTATCTGATATAGAATGAGACTTGAATTTCCCTTTTCAATTACTGTTGTGCTTGTTTAAGGGGTAGAATGTTCCTCGTTCTATTGAAATACTGCGTTGTGTTATCTGCTATCGATGTGTCGATGTGTCGTTTGGTAATCTCTGCTTGGCCATTTTGGCCATATGGTTCTCCGTGATGTGATTTGTTAGTTATCACAAACTTACACAATGACACGATATTATCCACTTTGAGCATAAGCTCGGTGACTTTGCTTTTGGTTCCCTCACAAGGTCTCGTACCAATAGAGATAGTGTTCTTTACTTATAGGCCCATGACTTTTTCCTTAATTACCCAACGTGGGACTCCCTCCCAACAATCCTCAACATGATTGGCAATAATGTCTAATCGGTTTCAGAGAAAAATTCTAATAGAAATAACGAAAGAGCCTCTAAGAAAAATAAGGATGGAAGTAGTTTTTTAAACCATTCATTCAACTAGTCCTTACTTTGCCCAAATGATCTTTTGAATGTAACCATAGTTGGATAGAATGTTAGCTAGGTGTAGCGCTGTCGGTTAGACACCTAATATAGTTGCACACAACGTATCAACAATGAGAAAAATGGGGATTCATACCGACTTTGGAACTCCAGAAGGCCGATCAAAGGCCTCCGTTCCCATCTTTAGGCTCCTTTGATGACCATTGATTGTTTTTGTTTTGAAAATTAAGCGTATAAACACTCTTTTCACTTGGGCAAAAAAGAAATATGAAAACCATTCTAAAGAAATTGTGAGAAAGCACACCGCAATTTTTGACAACAGAGCGGAAAATCAAATCGTTATCAAGCGGGACCTTAGTTACTTTTTCCACGTTAGTTTTGAGTTGGTATTTCTTATCTATAGGTTTAAATGATTTCCCATTGTTTAAGTAATGGTGAAGAAAAGTCCCAAGCATATGAAATTTGGTAGTCCTTTTGTAGCAGATAAGGCTATAACTGAGTAGTTCATTTGGTTGAATGTTAGTGCAAATAGTGTCCATAGATTTTATTGAAAACTTTTCTTATAAAATTTTGAATCATGCAGTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGCCTAGCCTCAACGCTTCTTACAAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAGGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAAATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTACAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGAATCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCAGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTACAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGTTTGATTTTCAGTCATTTAACGGTTTTTGTCTTTCTACTGGATCGAAAACCACATCGCACTTGAAAACGTTAACATCGATCTGCAAGTAAAAGTAAAAATAAATTCAGCTTTTCAGAACTCTACTTTACAGTCACTACTAAATCTGGATTAGAAACATTATGTCAAATAACTTTTGATCTGATCCTGCTTTTAAATAGAATGTAGCTGTTGTTTCTTTCCTCAAATTTGATTCATTTATCAACTGCAATTGCTCTTCAGATAGCATTTTGGATTAATATCTGGATTTGTTTGTTATTTTCCTCGTGTTGTGTTCGATTACCGACACTTGTTCCAACTATTTCTAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGGACGTTACGGAAACGAACCAACCTTTGCACAATGGGCTGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTTTTGTAAAGATAAAATGATAAAAAGCAACATTCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGTACTTTTTCATCGATGCACACGAACCAAAATACTTATAAATGGAAACTGAAAATTCGAATGCCTTGTTTATTGCTCGTGTTGTGATGTAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCGACCTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCGGATCAGTCGAGGACTATTCGCTTGCCGGTATGTTTCTTTCCACCTGAATTATTTCGAGTAAGAAATAACAAAGAACAGCACAAGGAGAGAAAAAAATTCCCAATGAACTAAAGATTTCATTGATGAATGGACAGTTTCACATGGTGGAAGCAACGTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTGCCGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAACCAAAATCTCAAACCTTCGGTCTGTCGTCTTGCTACTCGGATCTTCCTTCCTCTCCCATTGCAGTCTCAGCATGTTTTAACTAGTTGAATCTCATGCTCTTTTCCAGGAAGTCATTTCCGACCCGGAAGCGGTAACTGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTCGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGAAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGCCATGATGATGAGTGTTCATCAGATTCCTTCAAGAGTATCTATTATGATCTGATATGAGAGGCTTAAACAAGGCTTGTTCCTTCTTTTTTCTGTAACATTTATTGTTCTTTCCCACTTTGAGGATAGATTAGTATCATGTTGTTTACAGACTGATAGCTACTTTCTGTTCATACATATTTAATTTAAATCAAGAGATTTGTCTTCATCCATGATTGTGGCCTCTGGATTAATGTCTTTACGATATAGTGTAACGAAAAGATTAACTTTTTTTGGGTTCTTGACGACAGTTGTGATATCAATACCAGATTCTATAGTCGAGGTGTGAATTGGGACTTTTGAGTATTTTTTGTTGAACATACTCTTTGTGGGAAACACTCGCACTCTAACCAGGTTCTTGTTGAACACAACTCTTTGTGGGAAACACTCGCATTCTTTATTAACACCAATTGAGAGCATATTACAAGACATTCGGTAGAATACTACTACTCCTTCTACATGAGACTGCTGATTGAAAACCTACTCCTAGGTAGGGTAGAAGGGTATTTCAATAGATTAAAATAGTTAGGTATCTTCCTGATCCTATTGAGCTATTGATGACATTTTAACAGTCCTATAAATGGGTTGAGAGGACTATTGTCTTTAGATTATGTCGGAGCTTAAGAATTGGCAATATGCAATTCAAGATGGGCTAATGAAAATTGGTGTTGATCTCTATAATGGGTTGACTTTGGATCATTCAATGGGTACCAAGATTAGTGGTTCGGCATTCAACCAGAACATGAGAGTATATATATGTCTATGCAAGTGTCGAAAGAATCCTTTTAGCCTCTTCTTCATAGATCGAAGCAATGGGTAATTGAGGTTGTTTTTCGCGATCAAAGACAGCCATGCAATAGGGGCATGCTTGACACGTTCCACAAAATTTAGGTGTATGTTGTATATTTAACCTTTTAATATTGAACTTTAAATTATGTTTTTGTTCGGATAATTCCGTCAAATATATTAACAAACGGGAACCTTGCATGTCCCATTTGGGTATCGGTCACACTCATGTTGCCTAATTGAAACAATACGAGCATGCTTGATTTTGATAATCATTTAGTTCTTTTAATATATGAAAAAAAAAAGTAATTTTTAAAATATTATTTTAGTTTTGGAATTTTGTTAATTTTTAAAACACAAAACACATTTACATCGAGAATATCTCACCAATCCCTCCTATGTCTCAGCCTTAATTTCATCCCACCAAATTATCCACAAAAAAAAAAAAAGAATAAGTTCATCTTATTCCCATTTCAACGCACGCAATATCATCTTGAATTGGCTTCACCAACATCAAAGCTCTGGAGCTAGAACAGAAGGCGTAATCCGAAATTGGGAGCAAAAGAACGACACCGCCATCAGATTTGGCAGAAAAAGAGAGGCAAAATATAAAACGTTTCATACAGGAAAGGGAAAATTTCAATAAATGTGGCAGCTCAGTCCATTTTGTAGTGACATTTATCTTCGTTTTGGAAAATTGTTGAGAACCCATATAAACCCTTGAGCGTAGGTGAATTTGCAGTGGAATTTTGCGGATTCCCAATCTCCAAAAACCCACAAAACCCCTTGAAATTAAAGACCATGTGCGTTTTATCTTCAATTTCTAAGTTCGTAAGGAGAAGTACAGAGGGAGAGAGGATTTTAGAATGAAAATCAAAGGGAGTGGAAGGAAGAAAAGTGCGAGCGGTTCAACGGTGGCCATGGATGGTGGTGAAGTCGTCCATGGAGGCGACTCGGATTATGCTAATATGAACAGCAGCAGCAACAACAACAACAACGACGCCATTATTAGCGTTGAGCCTTCGACTTCACATTTATCGAAGACTCATCAAGAACAAAACCTAGGAGAGCTTGACGACGGCGGCGATGGGGAGGAAGAAGATGAACACGACGGCGATGAGGCTGATTTTGCTGCTCAGAGAACCAATCTCGATGATGGGTTCTATGAAATTGAAGCAATTCGTCGAAAAAGAGTTCGTAAGGTGTTCTTATTTTCGATTCTCCTTGTGTTTAGGTCTTCTGATTTCTTTGAATTGATTGAATGATGGGTTTATGAATGTTTGTTCATTTACTGATTTCGGGGCTTTCTTTGCTGTGGGGATGATTGATTCAAAACACAGGGACAGCTTCAGTACTTGATCAAATGGTAAGCCATAGCTGCACCTCTTTGTTGTTTGGTTGTCTTGGTTTCTTAGAGCTTGACTATGGCTACTCAAATTACTGACCAAACTGAGCTTTCCTAAAGGCGAGGCTGGCCGGAGACGGCTAATACTTGGGAGCCCTTGGAGAATCTCCATACGTGCTCCGATTTCATCGATGCGTTCGAACGGAGGTATTCTCGTCTACTTCGATCAGTATCTTTTGTTGGTAGCTAGAGTAAGCATTCATTGACATGTTGTGCTGATTGCTGTGATGGTTTCTCGTGAAGTTTATGGTATAATGTTGTTGAAATTTGGTTTTGTTTTCGAAGTTTAACAACAGGAAAGCAACGGAAGCGAAAGAGAAAACATGGGGTTGTTCATACTCAGACCAAGAAAAGGCAGCAGGGAGCTAACTTTTCTACTTACAATGTCACAGATGTTGAAATCAGTGTTCTTGATCAACGTCTGCCGTCTGCTCCGATAAACATGTCGAGCCTTACTCATCATTACACTCATTCGCAATCGATAGTTTGTAATCACGAAGGAGATAAGAATGGAGATTTAATTGCTCTTGAAAGAGGCAAGAAAATCAATATTGATAACGTGGGGAAGAATACTACTCAACGAAAGAAAGATGAACATGAGTATGATCCGAAACTTAGTGAGCTTAAGGCAACAGTATTAACGAACGTAGCCATTGGCGATAAGCTTGCAGTCAATTTTCAAGAAGCTAGGACGATGGATAACAATGGCCCGGCAGCCAGTCTTTCTAAAAGTGGCACTGTGGAAGCAACTGCTGACAATCGGTGCATTGGGGCTAAGAGAAGGAAGTCGGGTTCGGTTAAAAGGTTTAGACAAGATTCAACTTTATCTGAACTACCTGTGGCTCAAAATGCAGAATTGACATTGGCTGTAGTAGAATCCGGTGCTCAAGTAGAACCGATTGGGGTCGAGAATTCTGGATATCATGGGGAAGGTTTCATTCGCAATAACAAGACCGATGAAGCCAGAAACGAGCTGCGTATCATCAAGATTATCAAACCGTTAGGCTATTCTGCATCTGTGTCGAACAACATTCAGGACGTGTTGGTAACGTTTGTGGCCATGAGGTATGTCAGCTTTTTCTTTCCTCTTGGTATATGGTAAATCTAATTCTGTCCTATTTTTTTAAATATATGATGAAAGTGGACAATATTATACCATTGTGGAGATTCGTGGTTCCGAACATGGTATCGGAGCCATGTTCTTAACGTAGTCATGTCAAAAGAATCCTCAAATGTCGAACAAAGAAGTTGTGAGCTTCAAAGGTGTAGTCAAAAAGTGACTCAAAGTATCGAACAAAGGGTATACTTTTTTCGAGGGCTCCTAAGAAAGGAGTCGAACCTTAATTAAGGGGAGGTTGTTTGAGGATTCTATATAGGCCTCACGGGAGGCTCTATGGTGTATTTTGTTTGAGGGGAGGATTGTTGAGAATTGTTGTGAGGGAGAGATTCCCATCTCGTGTCGGTCTATTTCATATTCCGAGATGACATTTTTTGAATGATTTCGTTGTTTTAGATCTGATGGAACCGAAGTGATGGTCGATAACAAGTTCCTCAAGGCTAACAATCCGCTACTGGTAACTGGTTCAATTCTTCACTTTATTATGCTTTTGAACTTCCTTAAACAATGCTCAATTGTTTTTCCTTCTATTCTAACTGTGGTGTTAACTAATACCAGTTGATCAACTTCTACGAGCAACATCTCCGCTATACGACTAGATCATGAATAGCAAAATGAATGAACGGTATGACTTTTGGGATCCCGTCTTTGTTATTTCTTTATATTTTCGTGCATTTCTACTGCCTCTTGGTGCGCATGATCGAGTATAAGGAGATGGTTAAACAAGGTCTACACGTTTTTTTTTATCGATAACAGTATCCTCCACTGTGGTCACATCTCCTTCTTGCTGTGAAGAAACGAGATAAGAAGTTCGAGGCTTAGAATCTTTCCGCTAATTATGATATTAATGTTTTATATGTAGGTAGCTGCGTCGTTCCTAAGGTTTTGTATATATTACCGTTATGTCGATCTCGTTGCAGTCAATGCACTTGTTTAATCTTTGATTTCTCAAGAGTCAAGAGCAATGGATAGATTTGATTGTAACTTGAGAGTCCTTAGGGAGTCAATGCAATCATTGTGGATTGCATATATATGGTCTTTTTTTCCCCTTTTTTTGTGTATTTTTTTGAGAATGATGCTATAGTATGTTTCCTCGAGGTGTTTTTTGTTCTTTTCTATGCTTTTGGAGACGACATCGTGTCGAAGTTTACATGGGAAGAGAGCGAATTTCTGTTTCCGAGCAATGTGGCTCGCAATTTGTGCACTAAAAATGAAAAAAGAGTGAGAATTACTCCTCCATGGCTGTTTTTGAAGAACGAGTAATCGTTCTTCACTTACGACGGAGCCATGCCTCCATGGAGAATGCTCGCTTCAAGATCTAATGTCATTTTCGAACTCAACTATTGTGTTCTACACAACCTTGTTGTTTCTTTCCCGTCCTCGACCCAACCTCTTCATTGAACTTTCTGCCTACAATCATGCATGGATGAAACAACAGGTTGATGCCATTTCCATTGAAATCTTTTGGATTACATTTGGGAGATGAAAATTTACATGTCTTG

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCACAAGTGAGTTGGGGGAGGCAAAATGGGAACCTCTTATCCATTGTTTTATCAACAAAGCCTCCAAAAGCCTATTTACCCACACAAGTTTTCCTCCCCACTCTTCTTCTCTCAGCCCACTCTCCATTCCTTCTTCTTCTTCTTCTTCTTCTTCACCAATCACCTCTTCCATCCCCTTCATCAATCAATGACACCCTTTTCATATGCTTCACATTTCCCCTTCTGGGTCGCCGCCCCAGTTCAATTTTGAGTGATTCCTTCATTTATGTCCGCCATAGTTGCAGATTAGCAGAACCCAGTTGGAGAACGAAGAACAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGCCTAGCCTCAACGCTTCTTACAAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAGGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAAATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTACAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGAATCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCAGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTACAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGGACGTTACGGAAACGAACCAACCTTTGCACAATGGGCTGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTTTTGTAAAGATAAAATGATAAAAAGCAACATTCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCGACCTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCGGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACGTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTGCCGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAACCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCGGTAACTGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTCGAAAAGATTATGTCGGAGCTTAAGAATTGGCAATATGCAATTCAAGATGGGCTAATGAAAATTGGTGTTGATCTCTATAATGGGTTGACTTTGGATCATTCAATGGTTCGTAAGGAGAAGTACAGAGGGAGAGAGGATTTTAGAATGAAAATCAAAGGGAGTGGAAGGAAGAAAAGTGCGAGCGGTTCAACGGTGGCCATGGATGGTGGTGAAGTCGTCCATGGAGGCGACTCGGATTATGCTAATATGAACAGCAGCAGCAACAACAACAACAACGACGCCATTATTAGCGTTGAGCCTTCGACTTCACATTTATCGAAGACTCATCAAGAACAAAACCTAGGAGAGCTTGACGACGGCGGCGATGGGGAGGAAGAAGATGAACACGACGGCGATGAGGCTGATTTTGCTGCTCAGAGAACCAATCTCGATGATGGGTTCTATGAAATTGAAGCAATTCGTCGAAAAAGAGTTCGTAAGGGACAGCTTCAGTACTTGATCAAATGGCGAGGCTGGCCGGAGACGGCTAATACTTGGGAGCCCTTGGAGAATCTCCATACGTGCTCCGATTTCATCGATGCGTTCGAACGGAGTTTATGGTATAATGTTGTTGAAATTTGGTTTTGTTTTCGAAGTTTAACAACAGGAAAGCAACGGAAGCGAAAGAGAAAACATGGGGTTGTTCATACTCAGACCAAGAAAAGGCAGCAGGGAGCTAACTTTTCTACTTACAATGTCACAGATGTTGAAATCAGTGTTCTTGATCAACGTCTGCCGTCTGCTCCGATAAACATGTCGAGCCTTACTCATCATTACACTCATTCGCAATCGATAGTTTGTAATCACGAAGGAGATAAGAATGGAGATTTAATTGCTCTTGAAAGAGGCAAGAAAATCAATATTGATAACGTGGGGAAGAATACTACTCAACGAAAGAAAGATGAACATGAGTATGATCCGAAACTTAGTGAGCTTAAGGCAACAGTATTAACGAACGTAGCCATTGGCGATAAGCTTGCAGTCAATTTTCAAGAAGCTAGGACGATGGATAACAATGGCCCGGCAGCCAGTCTTTCTAAAAGTGGCACTGTGGAAGCAACTGCTGACAATCGGTGCATTGGGGCTAAGAGAAGGAAGTCGGGTTCGGTTAAAAGGTTTAGACAAGATTCAACTTTATCTGAACTACCTGTGGCTCAAAATGCAGAATTGACATTGGCTGTAGTAGAATCCGGTGCTCAAGTAGAACCGATTGGGGTCGAGAATTCTGGATATCATGGGGAAGGTTTCATTCGCAATAACAAGACCGATGAAGCCAGAAACGAGCTGCGTATCATCAAGATTATCAAACCGTTAGGCTATTCTGCATCTGTGTCGAACAACATTCAGGACGTGTTGGTAACGTTTGTGGCCATGAGATCTGATGGAACCGAAGTGATGGTCGATAACAAGTTCCTCAAGGCTAACAATCCGCTACTGGTAGCTGCGTCGTTCCTAAGGTTTTGTATATATTACCGTTATGTCGATCTCGTTGCAGTCAATGCACTTGTTTAATCTTTGATTTCTCAAGAGTCAAGAGCAATGGATAGATTTGATTGTAACTTGAGAGTCCTTAGGGAGTCAATGCAATCATTGTGGATTGCATATATATGGTCTTTTTTTCCCCTTTTTTTGTGTATTTTTTTGAGAATGATGCTATAGTATGTTTCCTCGAGGTGTTTTTTGTTCTTTTCTATGCTTTTGGAGACGACATCGTGTCGAAGTTTACATGGGAAGAGAGCGAATTTCTGTTTCCGAGCAATGTGGCTCGCAATTTGTGCACTAAAAATGAAAAAAGAGTGAGAATTACTCCTCCATGGCTGTTTTTGAAGAACGAGTAATCGTTCTTCACTTACGACGGAGCCATGCCTCCATGGAGAATGCTCGCTTCAAGATCTAATGTCATTTTCGAACTCAACTATTGTGTTCTACACAACCTTGTTGTTTCTTTCCCGTCCTCGACCCAACCTCTTCATTGAACTTTCTGCCTACAATCATGCATGGATGAAACAACAGGTTGATGCCATTTCCATTGAAATCTTTTGGATTACATTTGGGAGATGAAAATTTACATGTCTTG

Coding sequence (CDS)

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGCCTAGCCTCAACGCTTCTTACAAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAGGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAAATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTACAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGAATCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCAGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTACAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGGACGTTACGGAAACGAACCAACCTTTGCACAATGGGCTGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTTTTGTAAAGATAAAATGATAAAAAGCAACATTCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCGACCTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCGGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACGTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTGCCGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAACCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCGGTAACTGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTCGAAAAGATTATGTCGGAGCTTAAGAATTGGCAATATGCAATTCAAGATGGGCTAATGAAAATTGGTGTTGATCTCTATAATGGGTTGACTTTGGATCATTCAATGGTTCGTAAGGAGAAGTACAGAGGGAGAGAGGATTTTAGAATGAAAATCAAAGGGAGTGGAAGGAAGAAAAGTGCGAGCGGTTCAACGGTGGCCATGGATGGTGGTGAAGTCGTCCATGGAGGCGACTCGGATTATGCTAATATGAACAGCAGCAGCAACAACAACAACAACGACGCCATTATTAGCGTTGAGCCTTCGACTTCACATTTATCGAAGACTCATCAAGAACAAAACCTAGGAGAGCTTGACGACGGCGGCGATGGGGAGGAAGAAGATGAACACGACGGCGATGAGGCTGATTTTGCTGCTCAGAGAACCAATCTCGATGATGGGTTCTATGAAATTGAAGCAATTCGTCGAAAAAGAGTTCGTAAGGGACAGCTTCAGTACTTGATCAAATGGCGAGGCTGGCCGGAGACGGCTAATACTTGGGAGCCCTTGGAGAATCTCCATACGTGCTCCGATTTCATCGATGCGTTCGAACGGAGTTTATGGTATAATGTTGTTGAAATTTGGTTTTGTTTTCGAAGTTTAACAACAGGAAAGCAACGGAAGCGAAAGAGAAAACATGGGGTTGTTCATACTCAGACCAAGAAAAGGCAGCAGGGAGCTAACTTTTCTACTTACAATGTCACAGATGTTGAAATCAGTGTTCTTGATCAACGTCTGCCGTCTGCTCCGATAAACATGTCGAGCCTTACTCATCATTACACTCATTCGCAATCGATAGTTTGTAATCACGAAGGAGATAAGAATGGAGATTTAATTGCTCTTGAAAGAGGCAAGAAAATCAATATTGATAACGTGGGGAAGAATACTACTCAACGAAAGAAAGATGAACATGAGTATGATCCGAAACTTAGTGAGCTTAAGGCAACAGTATTAACGAACGTAGCCATTGGCGATAAGCTTGCAGTCAATTTTCAAGAAGCTAGGACGATGGATAACAATGGCCCGGCAGCCAGTCTTTCTAAAAGTGGCACTGTGGAAGCAACTGCTGACAATCGGTGCATTGGGGCTAAGAGAAGGAAGTCGGGTTCGGTTAAAAGGTTTAGACAAGATTCAACTTTATCTGAACTACCTGTGGCTCAAAATGCAGAATTGACATTGGCTGTAGTAGAATCCGGTGCTCAAGTAGAACCGATTGGGGTCGAGAATTCTGGATATCATGGGGAAGGTTTCATTCGCAATAACAAGACCGATGAAGCCAGAAACGAGCTGCGTATCATCAAGATTATCAAACCGTTAGGCTATTCTGCATCTGTGTCGAACAACATTCAGGACGTGTTGGTAACGTTTGTGGCCATGAGATCTGATGGAACCGAAGTGATGGTCGATAACAAGTTCCTCAAGGCTAACAATCCGCTACTGGTAGCTGCGTCGTTCCTAAGGTTTTGTATATATTACCGTTATGTCGATCTCGTTGCAGTCAATGCACTTGTTTAA

Protein sequence

MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAATSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELKNWQYAIQDGLMKIGVDLYNGLTLDHSMVRKEKYRGREDFRMKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSSSNNNNNDAIISVEPSTSHLSKTHQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGWPETANTWEPLENLHTCSDFIDAFERSLWYNVVEIWFCFRSLTTGKQRKRKRKHGVVHTQTKKRQQGANFSTYNVTDVEISVLDQRLPSAPINMSSLTHHYTHSQSIVCNHEGDKNGDLIALERGKKINIDNVGKNTTQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTMDNNGPAASLSKSGTVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYHGEGFIRNNKTDEARNELRIIKIIKPLGYSASVSNNIQDVLVTFVAMRSDGTEVMVDNKFLKANNPLLVAASFLRFCIYYRYVDLVAVNALV

Homology

[Close]

BLAST of CmaCh08G009890 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 544.3 bits (1401), Expect = 3.0e-153
Identity = 325/588 (55.27%), Postives = 416/588 (70.75%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCIL 61
           SCLLPQFKC P++FSI F+T       +  +  H+       S +F        + QC +
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT-------SFCAPKHN-----KGSVFF--------QPQCAV 62

Query: 62  SAATSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGA---------VESSLASTLLT 121
           S + +  T +  +V +L+LP FDT++DS+ ++R  +Y            +E+  + TLLT
Sbjct: 63  STSPALLT-SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLT 122

Query: 122 SEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFM 181
           S+EA + AAAAEAVALA+AAVK A DA L   NSN+   +T S +  +S     KWDQF 
Sbjct: 123 SDEAVVVAAAAEAVALARAAVKVAKDATLF-KNSNNTNLLTSSTADKRS-----KWDQFT 182

Query: 182 ESERADIIGEPVGVNNRPVEGDALEPSTAESD---DME-PTSEELELLQDEFSKSIAVRS 241
           E ERA I+G  + V++  +  D +  S +  +   D+E    EE+ELL+++ S S+AVRS
Sbjct: 183 EKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRS 242

Query: 242 NRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLT 301
            RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+SKLLT
Sbjct: 243 TRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLT 302

Query: 302 ASDELELSEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKD 361
             +E ELS GIQDLLKLERL+ EL  R G +PTFAQWA+AAGV+Q++LR+R+++GT CKD
Sbjct: 303 VREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKD 362

Query: 362 KMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 421
           KMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQ
Sbjct: 363 KMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQ 422

Query: 422 AVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATV 481
           AVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMKRL  V
Sbjct: 423 AVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAV 482

Query: 482 LMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK----- 541
           L++PK PRSL+QK G+NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+K++  L      
Sbjct: 483 LLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQ 542

Query: 542 --NWQYAIQDGLMK--------IGVDLYNGLTLDHSMVRKEKYRGRED 562
              W++ ++DG MK        +GV       ++ S  RK K + R +
Sbjct: 543 VIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNN 562

[Close]

BLAST of CmaCh08G009890 vs. ExPASy Swiss-Prot
Match: Q946J8 (Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana OX=3702 GN=LHP1 PE=1 SV=2)

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-56
Identity = 178/474 (37.55%), Postives = 248/474 (52.32%), Query Frame = 0


Query: 558  GREDFRMKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSSSNNNNNDAIISVEPST 617
            G  +  ++  G  RK S  G   + DGG    GG  +        +    D         
Sbjct: 19   GEAETAVETVGESRKISGDGGFGSDDGGGGGGGGSGESILREIGDDRPTEDG-------- 78

Query: 618  SHLSKTHQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQ 677
                   +E+   + DDGGD EE++E +G+      +R  LD+GFYEIEAIRRKRVRKG+
Sbjct: 79   -----DEEEEEDEDEDDGGD-EEDEEGEGEGGQ--EERPKLDEGFYEIEAIRRKRVRKGK 138

Query: 678  LQYLIKWRGWPETANTWEPLENLHTCSDFIDAFERSLWYNVVEIWFCFRSLTTGKQ-RKR 737
            +QYLIKWRGWPETANTWEPLENL + +D IDAFE               SL  GK  RKR
Sbjct: 139  VQYLIKWRGWPETANTWEPLENLQSIADVIDAFE--------------GSLKPGKPGRKR 198

Query: 738  KRKHGVVHTQTKKRQQ--GANFSTYNVTDVEISVLDQRLPSAP----INMSSLTHHYTHS 797
            KRK+   H+Q KK+Q+    +      +D   S+ +  LP  P    ++ SSL +    +
Sbjct: 199  KRKYAGPHSQMKKKQRLTSTSHDATEKSDSSTSLNNSSLPDIPDPLDLSGSSLLNRDVEA 258

Query: 798  QSIVCNHEGDKNGDLIALERGKKINIDNVGKNTTQRKKDEHEYDPKLSELKATVLTNVAI 857
            ++   +++ + N   + + R  ++ IDN           E EYDP L+EL+  V  +   
Sbjct: 259  KNAYVSNQVEANSGSVGMARQVRL-IDN-----------EKEYDPTLNELRGPVNNSNGA 318

Query: 858  GDKLAVNF-QEARTMDNNGPAASLSKSGTVEATADNRCIGAKRRKSGSVKRFRQDSTLSE 917
            G         E   +  NG    L K    E   ++R IGAKRRKSGSVKRF+QD + S 
Sbjct: 319  GCSQGGGIGSEGDNVRPNG----LLKVYPKELDKNSRFIGAKRRKSGSVKRFKQDGSTSN 378

Query: 918  ---LPVAQNAELTLAVVESGAQVEPIGVENSGYHGEGFIRNNKTDEARNELRIIKIIKPL 977
                P  QN    L  ++S  ++  +G E  G   E    + KT     EL I KI+KP+
Sbjct: 379  NHTAPTDQNLTPDLTTLDSFGRIARMGNEYPGVM-ENCNLSQKT--KIEELDITKILKPM 438

Query: 978  GYSASVSNNIQDVLVTFVAMRSDGTEVMVDNKFLKANNPLLVAASFLRFCIYYR 1021
             ++ASVS+N+Q+VLVTF+A+RSDG E +VDN+FLKA+NP L+   + +   Y R
Sbjct: 439  SFTASVSDNVQEVLVTFLALRSDGKEALVDNRFLKAHNPHLLIEFYEQHLKYNR 443

[Close]

BLAST of CmaCh08G009890 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 6.7e-52
Identity = 112/292 (38.36%), Postives = 177/292 (60.62%), Query Frame = 0


Query: 253 KSGSSSRKKRNSGQEVDY--NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKE 312
           KSG +++ +R +  +  +   D +R         +LL A +E+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 313 ELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGGGM 372
            L+ +   +P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 373 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 432
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 433 TYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP 492
             ++K+  K L    GR P +EEIA    +++++L  +  + + P SLE   G  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298

Query: 493 SEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYAIQDGLMK 536
            + I + +  T ED + K  ++++LEK++  L          +Y + DG MK
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMK 349

[Close]

BLAST of CmaCh08G009890 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 4.1e-49
Identity = 122/340 (35.88%), Postives = 189/340 (55.59%), Query Frame = 0


Query: 216 LQDEFSKSIAVRSNRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVD------ 275
           L D   K    ++ R + +KA  T A  + AT++       +   + + G++ D      
Sbjct: 22  LLDPALKPAETKAKRSSRKKA--TTAVVEPATTIAPTADVDAIDDEDSVGEDEDAAAKAK 81

Query: 276 -------YNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAGRYGNEPTF 335
                    D +R         +LL A +E+EL+  I DLL LER+++EL  +    P+ 
Sbjct: 82  AKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSD 141

Query: 336 AQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRG 395
           A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+QEG  G
Sbjct: 142 AEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLG 201

Query: 396 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLY 455
           L+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   ++K+  K L 
Sbjct: 202 LIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLS 261

Query: 456 TANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTA 515
              GR P +EEIA    +++++L  +  + + P SLE   G  ++ +  + I + +  T 
Sbjct: 262 QEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETP 321

Query: 516 EDLLIKQFMKQELEKIMSELK-------NWQYAIQDGLMK 536
           ED + K  ++++LE ++S L          +Y + DG MK
Sbjct: 322 EDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 358

[Close]

BLAST of CmaCh08G009890 vs. ExPASy Swiss-Prot
Match: Q944N1 (Chromo domain protein LHP1 OS=Solanum lycopersicum OX=4081 GN=LHP1 PE=1 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-47
Identity = 144/402 (35.82%), Postives = 209/402 (51.99%), Query Frame = 0


Query: 621  SKTHQEQNLGELDDGGDGEEEDE-------HDGDEADFAAQ-RTNLDDGFYEIEAIRRKR 680
            SK  +E   GE +  G+GEE+DE         GD    A + +  L +GFYEIE +RR+R
Sbjct: 45   SKCEEEPVAGEGE--GEGEEKDEAPEVVRVEKGDGDGVAKKVKPKLAEGFYEIETVRRRR 104

Query: 681  VRKGQLQYLIKWRGWPETANTWEPLENLHTCSDFIDAFERSLWYNVVEIWFCFRSLTTGK 740
              KG++ YLIKWRGWPE+ANTWEP  NL +C+D IDA+E               SL +GK
Sbjct: 105  TVKGKVYYLIKWRGWPESANTWEPETNLSSCTDIIDAYE--------------ESLKSGK 164

Query: 741  QRKRKRKHGVVHTQTKKRQQ---GANFSTYNVTDVEISVLDQRLPSAPINMSSLTHHYTH 800
             R+RKRK G   T    +QQ    A  +TYN   V++ ++++  PS P+N+   T     
Sbjct: 165  LRRRKRKFGATQTHPMIKQQRRFSAPVATYNGPAVKVRIIEEPTPSPPLNVLKAT----- 224

Query: 801  SQSIVCNHEGDKNGDLIALERGKKIN--IDNVGKNTTQRKKDEHEYDPKLSELKATVLTN 860
                          DL+    G ++N  +D V      R ++++E + KLSELK    TN
Sbjct: 225  --------------DLVD-SNGSELNSKVDEVVNGNGLRLREQNELNLKLSELKGATSTN 284

Query: 861  VAIGDKLAVNFQEARTMDNNGPAASLSKSGTVEATADNRCIGAKRRKSGSVKRFRQDSTL 920
               G+ + ++         NG      K    E    +RC GAK+RKSG V+RF++++T 
Sbjct: 285  ---GNPVDIS--------GNGLTNGFPKVNGAEFYQSDRCTGAKKRKSGCVRRFKRETTS 344

Query: 921  SELPVAQNAELTLAVVESGAQVEPIGV-ENSGYHGEGFIRNNKTDEARNELRIIKIIKPL 980
            +     Q+A      +  G    P+      G H    +     D++++   I +++ P+
Sbjct: 345  AVKDDTQDA------LAGG----PLATFMQDGSHNHVMV----ADDSKDGYTITQLVNPV 385

Query: 981  GYSASVSNNIQDVLVTFVAMRSDGTEVMVDNKFLKANNPLLV 1009
             Y AS SN++ DV VTFVA R+DG  V+VDNKFLK NNPLL+
Sbjct: 405  SYKASFSNDMLDVSVTFVAKRADGNLVLVDNKFLKMNNPLLL 385

[Close]

BLAST of CmaCh08G009890 vs. ExPASy TrEMBL
Match: A0A6J1KM29 (RNA polymerase sigma factor OS=Cucurbita maxima OX=3661 GN=LOC111494519 PE=3 SV=1)

HSP 1 Score: 981.5 bits (2536), Expect = 2.7e-282
Identity = 524/542 (96.68%), Postives = 529/542 (97.60%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60

Query: 61  LSAATSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAA 120
           LSAATSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAA
Sbjct: 61  LSAATSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAA 120

Query: 121 AAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERADII 180
           AAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERADII
Sbjct: 121 AAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERADII 180

Query: 181 GEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKARRTR 240
           GEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKARRTR
Sbjct: 181 GEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKARRTR 240

Query: 241 ASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQ 300
           ASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQ
Sbjct: 241 ASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQ 300

Query: 301 DLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVIS 360
           DLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVIS
Sbjct: 301 DLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVIS 360

Query: 361 IAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 420
           IAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 361 IAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 420

Query: 421 IRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQ 480
           IRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQ
Sbjct: 421 IRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQ 480

Query: 481 KFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYAIQDGL 536
           KFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEK++  L         W+Y ++DG 
Sbjct: 481 KFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGR 540

[Close]

BLAST of CmaCh08G009890 vs. ExPASy TrEMBL
Match: A0A6J1HL45 (RNA polymerase sigma factor sigB OS=Cucurbita moschata OX=3662 GN=LOC111464542 PE=3 SV=1)

HSP 1 Score: 960.3 bits (2481), Expect = 6.5e-276
Identity = 516/545 (94.68%), Postives = 524/545 (96.15%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKTPA TITPTPTSSHHHTFLPTANSTYFK RDPHSLRTQCI
Sbjct: 98  MSCLLPQFKCHPETFSIQFKTPASTITPTPTSSHHHTFLPTANSTYFKFRDPHSLRTQCI 157

Query: 61  LSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAA   T TGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 158 LSAASPPTLTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 217

Query: 121 IAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERA 180
           IAAAAAEAVALAKAAVKAANDAALLVNNSNS+RSVTKSQSSS+SNALHFKWDQFMESERA
Sbjct: 218 IAAAAAEAVALAKAAVKAANDAALLVNNSNSSRSVTKSQSSSRSNALHFKWDQFMESERA 277

Query: 181 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKAR 240
           DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELL+DEFSKSIAVRS RQTERKAR
Sbjct: 278 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKAR 337

Query: 241 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 300
           RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE
Sbjct: 338 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 397

Query: 301 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL
Sbjct: 398 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 457

Query: 361 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 458 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 517

Query: 421 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRS 480
           SRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAPRS
Sbjct: 518 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRS 577

Query: 481 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYAIQ 536
           LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEK++  L         W+Y ++
Sbjct: 578 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGME 637

[Close]

BLAST of CmaCh08G009890 vs. ExPASy TrEMBL
Match: A0A6J1DSR7 (RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 SV=1)

HSP 1 Score: 844.0 bits (2179), Expect = 6.8e-241
Identity = 458/545 (84.04%), Postives = 489/545 (89.72%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKT AIT+T T   SHHH FLPTANS+  KVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAA   TSTGTATTFNV+RLKLPP D NTDS+SAERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERA 180
           IAAAAAEAV LAKAAVK A DAALLVNNSNS+++  KSQSSSKS+ALHFKWDQFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKAR 240
           DIIG PVGVNNRP EGDAL+  TAESD  +PT+EELELLQDE S +IAVRS RQTER+A+
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240

Query: 241 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 300
           RTRA+EK ATSVVS+KSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Sbjct: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERL+EEL  RYG EPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420

Query: 421 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRS 480
           SRTIRLPFHMVEATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRLA VLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYAIQ 536
           LEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEK++  L         W++ ++
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540

[Close]

BLAST of CmaCh08G009890 vs. ExPASy TrEMBL
Match: A0A5A7T955 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00600 PE=3 SV=1)

HSP 1 Score: 837.8 bits (2163), Expect = 4.9e-239
Identity = 455/545 (83.49%), Postives = 483/545 (88.62%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKT A        +SHHH+FLPTA S+Y KVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA-------NNSHHHSFLPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAA   TSTGTATT NVDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERA 180
           IAAAAAEAV LAKAAVK A DAALL NN NS+R+ TKSQ S K +ALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKAR 240
           DIIGEPVGVN RP+EGDALEPST ESDD+EPTSEELELLQDE S+SI V+S RQTERKAR
Sbjct: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 300
           RTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Sbjct: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERL+EELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRS 480
           SRTIRLPFHMVEATY+VKEARKQL + NGR P D+EIA AAGLSMKRLA VLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYAIQ 536
           LEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEK++  L         W++ ++
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 538

[Close]

BLAST of CmaCh08G009890 vs. ExPASy TrEMBL
Match: A0A1S3CD00 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 835.5 bits (2157), Expect = 2.4e-238
Identity = 453/545 (83.12%), Postives = 483/545 (88.62%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKT A        +SHHH+F+PTA S+Y KVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA-------NNSHHHSFIPTAYSSYTKVRDPHSLRTQCI 60

Query: 61  LSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAA   TSTGTATT NVDRLKLPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERA 180
           IAAAAAEAV LAKAAVK A DAALL NN NS+R+ TKSQ S K +ALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180

Query: 181 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKAR 240
           DIIGEPVGVN RP+EGDALEPST ESDD+EPTS+ELELLQDE S+SI V+S RQTERKAR
Sbjct: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKAR 240

Query: 241 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 300
           RTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Sbjct: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERL+EELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420

Query: 421 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRS 480
           SRTIRLPFHMVEATY+VKEARKQL + NGR P D+EIA AAGLSMKRLA VLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYAIQ 536
           LEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEK++  L         W++ ++
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 538

[Close]

BLAST of CmaCh08G009890 vs. NCBI nr
Match: XP_023000238.1 (RNA polymerase sigma factor sigB [Cucurbita maxima])

HSP 1 Score: 981.5 bits (2536), Expect = 5.6e-282
Identity = 524/542 (96.68%), Postives = 529/542 (97.60%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60

Query: 61  LSAATSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAA 120
           LSAATSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAA
Sbjct: 61  LSAATSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEATIAA 120

Query: 121 AAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERADII 180
           AAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERADII
Sbjct: 121 AAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERADII 180

Query: 181 GEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKARRTR 240
           GEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKARRTR
Sbjct: 181 GEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKARRTR 240

Query: 241 ASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQ 300
           ASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQ
Sbjct: 241 ASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQ 300

Query: 301 DLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVIS 360
           DLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVIS
Sbjct: 301 DLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVIS 360

Query: 361 IAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 420
           IAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 361 IAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 420

Query: 421 IRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQ 480
           IRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQ
Sbjct: 421 IRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQ 480

Query: 481 KFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYAIQDGL 536
           KFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEK++  L         W+Y ++DG 
Sbjct: 481 KFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGR 540

[Close]

BLAST of CmaCh08G009890 vs. NCBI nr
Match: XP_023515004.1 (RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo])

HSP 1 Score: 961.4 bits (2484), Expect = 6.0e-276
Identity = 519/547 (94.88%), Postives = 526/547 (96.16%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITI--TPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAITI  TPTPTSSHHHTFLPTANSTYFKVRDPH LRTQ
Sbjct: 96  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHGLRTQ 155

Query: 61  CILSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 120
           CILSAA   TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE
Sbjct: 156 CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 215

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESE 180
           ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSS+SNALHFKWDQFMESE
Sbjct: 216 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 275

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELL+DEFSKSIAVRS RQTERK
Sbjct: 276 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 335

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 336 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 395

Query: 301 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 360
           SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI
Sbjct: 396 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 455

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 456 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 515

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 516 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 575

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYA 536
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEK++  L         W+Y 
Sbjct: 576 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 635

[Close]

BLAST of CmaCh08G009890 vs. NCBI nr
Match: XP_022964550.1 (RNA polymerase sigma factor sigB [Cucurbita moschata])

HSP 1 Score: 960.3 bits (2481), Expect = 1.3e-275
Identity = 516/545 (94.68%), Postives = 524/545 (96.15%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKTPA TITPTPTSSHHHTFLPTANSTYFK RDPHSLRTQCI
Sbjct: 98  MSCLLPQFKCHPETFSIQFKTPASTITPTPTSSHHHTFLPTANSTYFKFRDPHSLRTQCI 157

Query: 61  LSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAA   T TGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 158 LSAASPPTLTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 217

Query: 121 IAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERA 180
           IAAAAAEAVALAKAAVKAANDAALLVNNSNS+RSVTKSQSSS+SNALHFKWDQFMESERA
Sbjct: 218 IAAAAAEAVALAKAAVKAANDAALLVNNSNSSRSVTKSQSSSRSNALHFKWDQFMESERA 277

Query: 181 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKAR 240
           DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELL+DEFSKSIAVRS RQTERKAR
Sbjct: 278 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKAR 337

Query: 241 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 300
           RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE
Sbjct: 338 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 397

Query: 301 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL
Sbjct: 398 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 457

Query: 361 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 458 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 517

Query: 421 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRS 480
           SRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAPRS
Sbjct: 518 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRS 577

Query: 481 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYAIQ 536
           LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEK++  L         W+Y ++
Sbjct: 578 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGME 637

[Close]

BLAST of CmaCh08G009890 vs. NCBI nr
Match: KAG6593746.1 (RNA polymerase sigma factor sigB, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 959.9 bits (2480), Expect = 1.8e-275
Identity = 519/547 (94.88%), Postives = 526/547 (96.16%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITI--TPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAITI  TPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ
Sbjct: 97  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 156

Query: 61  CILSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 120
           CILSAA   TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE
Sbjct: 157 CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 216

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESE 180
           ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSS+SNALHFKWDQFMESE
Sbjct: 217 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 276

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELL+DEFSKSIAVRS RQTERK
Sbjct: 277 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 336

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 337 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 396

Query: 301 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 360
           SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 397 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 456

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 457 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 516

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 517 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 576

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYA 536
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEK++  L         W+Y 
Sbjct: 577 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 636

[Close]

BLAST of CmaCh08G009890 vs. NCBI nr
Match: XP_038875580.1 (RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida])

HSP 1 Score: 850.5 bits (2196), Expect = 1.5e-242
Identity = 462/545 (84.77%), Postives = 489/545 (89.72%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFKT A        + HHHTFLPTANS+Y KVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA------NYAPHHHTFLPTANSSYTKVRDPHSLRTQCI 60

Query: 61  LSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEEAT 120
           LSAA   TSTGTATT NVDRL LPPFDTNTDSVS ERLRSYLGAVESSLASTLLTSEEAT
Sbjct: 61  LSAASPPTSTGTATTLNVDRLMLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120

Query: 121 IAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESERA 180
           IAAAAAEAVALAKAAVK A DAALL NNSNS+R+  KS+SS + +ALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVALAKAAVKVARDAALLANNSNSSRAGEKSRSSPRPDALHFKWAQFMESERA 180

Query: 181 DIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKAR 240
           DIIGEPVGVNNRP+E DAL+PST +SDDMEPTSEELELLQDE S+SI VRS RQTERKAR
Sbjct: 181 DIIGEPVGVNNRPMETDALQPSTTKSDDMEPTSEELELLQDELSESITVRSKRQTERKAR 240

Query: 241 RTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSE 300
           RTRA+EK ATSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Sbjct: 241 RTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAAEELELSE 300

Query: 301 GIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360
           GIQDLLKLERL+EELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELADRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420

Query: 421 SRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRS 480
           SRTIRLPFHMVEATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRLA VLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK-------NWQYAIQ 536
           LEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEK++  L         W++ ++
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 539

[Close]

BLAST of CmaCh08G009890 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 544.3 bits (1401), Expect = 2.1e-154
Identity = 325/588 (55.27%), Postives = 416/588 (70.75%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTPAITITPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCIL 61
           SCLLPQFKC P++FSI F+T       +  +  H+       S +F        + QC +
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT-------SFCAPKHN-----KGSVFF--------QPQCAV 62

Query: 62  SAATSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGA---------VESSLASTLLT 121
           S + +  T +  +V +L+LP FDT++DS+ ++R  +Y            +E+  + TLLT
Sbjct: 63  STSPALLT-SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLT 122

Query: 122 SEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFM 181
           S+EA + AAAAEAVALA+AAVK A DA L   NSN+   +T S +  +S     KWDQF 
Sbjct: 123 SDEAVVVAAAAEAVALARAAVKVAKDATLF-KNSNNTNLLTSSTADKRS-----KWDQFT 182

Query: 182 ESERADIIGEPVGVNNRPVEGDALEPSTAESD---DME-PTSEELELLQDEFSKSIAVRS 241
           E ERA I+G  + V++  +  D +  S +  +   D+E    EE+ELL+++ S S+AVRS
Sbjct: 183 EKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRS 242

Query: 242 NRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLT 301
            RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+SKLLT
Sbjct: 243 TRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLT 302

Query: 302 ASDELELSEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKD 361
             +E ELS GIQDLLKLERL+ EL  R G +PTFAQWA+AAGV+Q++LR+R+++GT CKD
Sbjct: 303 VREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKD 362

Query: 362 KMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 421
           KMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQ
Sbjct: 363 KMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQ 422

Query: 422 AVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATV 481
           AVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMKRL  V
Sbjct: 423 AVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAV 482

Query: 482 LMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSELK----- 541
           L++PK PRSL+QK G+NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+K++  L      
Sbjct: 483 LLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQ 542

Query: 542 --NWQYAIQDGLMK--------IGVDLYNGLTLDHSMVRKEKYRGRED 562
              W++ ++DG MK        +GV       ++ S  RK K + R +
Sbjct: 543 VIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNN 562

[Close]

BLAST of CmaCh08G009890 vs. TAIR 10
Match: AT5G17690.1 (like heterochromatin protein (LHP1) )

HSP 1 Score: 223.0 bits (567), Expect = 1.1e-57
Identity = 178/474 (37.55%), Postives = 248/474 (52.32%), Query Frame = 0


Query: 558  GREDFRMKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSSSNNNNNDAIISVEPST 617
            G  +  ++  G  RK S  G   + DGG    GG  +        +    D         
Sbjct: 19   GEAETAVETVGESRKISGDGGFGSDDGGGGGGGGSGESILREIGDDRPTEDG-------- 78

Query: 618  SHLSKTHQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQ 677
                   +E+   + DDGGD EE++E +G+      +R  LD+GFYEIEAIRRKRVRKG+
Sbjct: 79   -----DEEEEEDEDEDDGGD-EEDEEGEGEGGQ--EERPKLDEGFYEIEAIRRKRVRKGK 138

Query: 678  LQYLIKWRGWPETANTWEPLENLHTCSDFIDAFERSLWYNVVEIWFCFRSLTTGKQ-RKR 737
            +QYLIKWRGWPETANTWEPLENL + +D IDAFE               SL  GK  RKR
Sbjct: 139  VQYLIKWRGWPETANTWEPLENLQSIADVIDAFE--------------GSLKPGKPGRKR 198

Query: 738  KRKHGVVHTQTKKRQQ--GANFSTYNVTDVEISVLDQRLPSAP----INMSSLTHHYTHS 797
            KRK+   H+Q KK+Q+    +      +D   S+ +  LP  P    ++ SSL +    +
Sbjct: 199  KRKYAGPHSQMKKKQRLTSTSHDATEKSDSSTSLNNSSLPDIPDPLDLSGSSLLNRDVEA 258

Query: 798  QSIVCNHEGDKNGDLIALERGKKINIDNVGKNTTQRKKDEHEYDPKLSELKATVLTNVAI 857
            ++   +++ + N   + + R  ++ IDN           E EYDP L+EL+  V  +   
Sbjct: 259  KNAYVSNQVEANSGSVGMARQVRL-IDN-----------EKEYDPTLNELRGPVNNSNGA 318

Query: 858  GDKLAVNF-QEARTMDNNGPAASLSKSGTVEATADNRCIGAKRRKSGSVKRFRQDSTLSE 917
            G         E   +  NG    L K    E   ++R IGAKRRKSGSVKRF+QD + S 
Sbjct: 319  GCSQGGGIGSEGDNVRPNG----LLKVYPKELDKNSRFIGAKRRKSGSVKRFKQDGSTSN 378

Query: 918  ---LPVAQNAELTLAVVESGAQVEPIGVENSGYHGEGFIRNNKTDEARNELRIIKIIKPL 977
                P  QN    L  ++S  ++  +G E  G   E    + KT     EL I KI+KP+
Sbjct: 379  NHTAPTDQNLTPDLTTLDSFGRIARMGNEYPGVM-ENCNLSQKT--KIEELDITKILKPM 438

Query: 978  GYSASVSNNIQDVLVTFVAMRSDGTEVMVDNKFLKANNPLLVAASFLRFCIYYR 1021
             ++ASVS+N+Q+VLVTF+A+RSDG E +VDN+FLKA+NP L+   + +   Y R
Sbjct: 439  SFTASVSDNVQEVLVTFLALRSDGKEALVDNRFLKAHNPHLLIEFYEQHLKYNR 443

[Close]

BLAST of CmaCh08G009890 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 185.3 bits (469), Expect = 2.5e-46
Identity = 119/332 (35.84%), Postives = 179/332 (53.92%), Query Frame = 0


Query: 191 VEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERKARRTRASEKAATSVV 250
           V+     PS    D +  TS  + L +    K   VRS RQ ER+A+  RA +       
Sbjct: 158 VDDTEANPSDNIKDSLS-TSSSMSLPE----KGNIVRSKRQLERRAKNRRAPKSNDVDDE 217

Query: 251 SLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKE 310
                 +S KK+   Q  D +D L+         +LLTA +E EL   IQ LLKLE++K 
Sbjct: 218 GYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKT 277

Query: 311 ELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGGGM 370
           +L  + G EPT  +WA A G++   L+  ++ G   ++K+I +N+RLV+ IAK YQ  G+
Sbjct: 278 KLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGL 337

Query: 371 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 430
           N QDL+QEG  GL++  EKF    G +F+TYA+WWI+Q++RKS+   SRTIRLP ++   
Sbjct: 338 NFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYML 397

Query: 431 TYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP 490
             KV EARK         P+ EE+A   G+S ++L  +L   + P S++Q    +Q+   
Sbjct: 398 LGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTF 457

Query: 491 SEVISDPEAVTAEDLLIKQFMKQELEKIMSEL 523
            E+  D    T    + KQ M+  +  +++ L
Sbjct: 458 QEITPDSGIETPTMSVGKQLMRNHVRNLLNVL 483

[Close]

BLAST of CmaCh08G009890 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 154.1 bits (388), Expect = 6.2e-37
Identity = 104/368 (28.26%), Postives = 197/368 (53.53%), Query Frame = 0


Query: 210 SEELELLQDEFSKSIAVRSNRQTERKARRTRASEKAATSVVSLKSGSSSRKK---RNSGQ 269
           S+  EL+    ++ + V S R+ ++KARR         S V+ ++G  S      R +  
Sbjct: 204 SDTTELVDTTPNQQVFVSSRRKVKKKARR---------SSVTAENGDQSSLPIGLRTTWN 263

Query: 270 EVD---YNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAGRYGNEPTFA 329
            +D      P +Y +     S+     +E E+S G++ +  +ER++ +L    G   + +
Sbjct: 264 NIDVPRVRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLS 323

Query: 330 QWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGL 389
            WAAAAG+N++ L + L+YG +C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+
Sbjct: 324 CWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGV 383

Query: 390 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYT 449
           ++GAE+FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L T
Sbjct: 384 LQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKT 443

Query: 450 ANG-RLPADEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTA 509
           ++G +  ADEEIA   G S+K++       K   S+++K G     K  E   D    + 
Sbjct: 444 SHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESP 503

Query: 510 EDLLIKQFMKQELEKIMSELKN-------WQYAIQDGLMKIGVDLYNGLTLDHSMVRKEK 564
           E+ +++Q  ++++  ++  L+         +Y +QD   K   ++   L +    +RK +
Sbjct: 504 EEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIE 557

[Close]

BLAST of CmaCh08G009890 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-32
Identity = 92/297 (30.98%), Postives = 159/297 (53.54%), Query Frame = 0


Query: 226 VRSNRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASK 285
           ++S ++ +R+ RR    E+               ++ N+G E +  + +       S S 
Sbjct: 74  IQSEKRRKRRRRRRVGYERL-----------EPEEEENAGVEAE-AETISVPVVGASRSG 133

Query: 286 LLTASDELELSEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTF 345
            L+  +E++L   +++  KLE L   +     NE      A+  G  +R+  + L     
Sbjct: 134 FLSRLEEVQLCLYLKEGAKLENLGTSVE---ENEMVSVLLASGRGKKKRSANEILCRRKE 193

Query: 346 CKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 405
            ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY +WW
Sbjct: 194 AREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWW 253

Query: 406 IKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRL 465
           IKQA+ ++++ +SR ++LP  M E T KV EA   L     R P+ EEIA    L++  +
Sbjct: 254 IKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAV 313

Query: 466 ATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKIMSEL 523
              +   ++P SL++    N  +   E++  P+    E+++ ++ MK E+E+++  L
Sbjct: 314 RLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSL 355

The following BLAST results are available for this feature:

BLAST of CmaCh08G009890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22056	3.0e-153	55.27	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
Q946J8	1.5e-56	37.55	Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana OX=3702 GN=LHP1 PE...	[more]
P26683	6.7e-52	38.36	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	4.1e-49	35.88	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
Q944N1	1.3e-47	35.82	Chromo domain protein LHP1 OS=Solanum lycopersicum OX=4081 GN=LHP1 PE=1 SV=2	[more]

BLAST of CmaCh08G009890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KM29	2.7e-282	96.68	RNA polymerase sigma factor OS=Cucurbita maxima OX=3661 GN=LOC111494519 PE=3 SV=...	[more]
A0A6J1HL45	6.5e-276	94.68	RNA polymerase sigma factor sigB OS=Cucurbita moschata OX=3662 GN=LOC111464542 P...	[more]
A0A6J1DSR7	6.8e-241	84.04	RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 ...	[more]
A0A5A7T955	4.9e-239	83.49	RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CD00	2.4e-238	83.12	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]

BLAST of CmaCh08G009890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000238.1	5.6e-282	96.68	RNA polymerase sigma factor sigB [Cucurbita maxima]	[more]
XP_023515004.1	6.0e-276	94.88	RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo]	[more]
XP_022964550.1	1.3e-275	94.68	RNA polymerase sigma factor sigB [Cucurbita moschata]	[more]
KAG6593746.1	1.8e-275	94.88	RNA polymerase sigma factor sigB, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_038875580.1	1.5e-242	84.77	RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]	[more]

BLAST of CmaCh08G009890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08540.1	2.1e-154	55.27	RNApolymerase sigma subunit 2	[more]
AT5G17690.1	1.1e-57	37.55	like heterochromatin protein (LHP1)	[more]
AT2G36990.1	2.5e-46	35.84	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	6.2e-37	28.26	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	2.1e-32	30.98	sigma factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 398..406 score: 82.44 coord: 507..518 score: 25.22 coord: 374..387 score: 52.4
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 662..715 e-value: 1.0E-15 score: 68.2
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 663..712 score: 17.191101
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 350..419 e-value: 6.0E-18 score: 64.4
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 429..504 e-value: 6.6E-14 score: 51.8
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 348..522 e-value: 1.2E-15 score: 55.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 423..499 e-value: 2.0E-11 score: 46.1
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 663..712 e-value: 5.0E-15 score: 55.2
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 113..422 e-value: 1.1E-37 score: 132.3
None	No IPR available	GENE3D	2.40.50.40		coord: 638..713 e-value: 1.9E-21 score: 77.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 632..647
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 594..625
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 565..653
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..259
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 46..523
None	No IPR available	PANTHER	PTHR30603:SF57	RNA POLYMERASE SIGMA FACTOR SIGB	coord: 46..523
None	No IPR available	CDD	cd00024	CD_CSD	coord: 663..712 e-value: 1.26673E-21 score: 86.762
IPR023779	Chromo domain, conserved site	PROSITE	PS00598	CHROMO_1	coord: 680..700
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 656..714
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 418..469
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 271..420

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G009890.1	CmaCh08G009890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0006325	chromatin organization
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity