CmaCh08G009440 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G009440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	MADS-box protein SOC1-like
Location	Cma_Chr08: 5883424 .. 5884392 (-)
RNA-Seq Expression	CmaCh08G009440
Synteny	CmaCh08G009440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCAAATATTCCTCCTCTCCCTCTTTTTTTAGCTTTCTCCACCAAATTTGTAAAGTGGGTTTGAAACTACTCCTCAAAAGGAAAGGTGGGTTTGCTTTGTTTTCCTCTTCTCTTCTTTGTGTTCTTCAAATTTTATTTCTGATTCAACCAAAATAGCCCCTCTGCCCCTTTTCTCCTTCTGGGTTTTCAGGTTTCTGGGGTTTTCTTTTGGTTTTAGATTGGTTCTGCCCTTTTGTGCTTCTATTTCAAGGTTTTCTTGTCTTCTTCTGTTTTTTCTCTTAGTTTTTGGGTTTAGGAGGGGAGATTTCAGTGCTTCTGCTCCTTGTTTGATTACACTTTTGTTTCCTTCTGTGGCCTTCCCCTTCTTTTCTTGATCTATAAATTCATCTTTTCCTTTGGGTTTCTTGAGATCCATCTCTGTGTAAGGGTTTATAGTGTTATTCAGGGGTAATTCCTCTATTCTTTGGTGTAAAGGGGTTTCAAATCCTGAGAAAATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGGTACTCTTAACATCTGCTTTTGCTCCAATCCATTCAGATTGTATGGCTTTAATCTTGATCTGCCTATGAATCTTTCCATTTATGAGTGATTTCTTATAGGTCTCAAGTAGCCTGGTTTTTTGCTGTTGTTTTCAATGAAACTATTGGGAGAAGTGAAAAGGGTTTGTACTAAATAACCATAGTTTAAACGCTCATACTGTTGATTACTGTTTGGTTTATATTAATTTATCAGTTGATTCCTTATTTAGATTATGATCGCACCCAAAAGCCTGCAATGGCTGCTCCTTTTTAG

mRNA sequence

TTCCAAATATTCCTCCTCTCCCTCTTTTTTTAGCTTTCTCCACCAAATTTGTAAAGTGGGTTTGAAACTACTCCTCAAAAGGAAAGGGGTTTCAAATCCTGAGAAAATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGGTCTCAAGTAGCCTGGTTTTTTGCTGTTGTTTTCAATGAAACTATTGGGAGAAGTGAAAAGGATTATGATCGCACCCAAAAGCCTGCAATGGCTGCTCCTTTTTAG

Coding sequence (CDS)

ATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGGTCTCAAGTAGCCTGGTTTTTTGCTGTTGTTTTCAATGAAACTATTGGGAGAAGTGAAAAGGATTATGATCGCACCCAAAAGCCTGCAATGGCTGCTCCTTTTTAG

Protein sequence

MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANSRSQVAWFFAVVFNETIGRSEKDYDRTQKPAMAAPF

Homology

[Close]

BLAST of CmaCh08G009440 vs. ExPASy Swiss-Prot
Match: O64645 (MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFA+S
Sbjct: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 NMQ 63

[Close]

BLAST of CmaCh08G009440 vs. ExPASy Swiss-Prot
Match: Q38838 (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-23
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF++S
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61 RS 63
           S
Sbjct: 61 SS 62

[Close]

BLAST of CmaCh08G009440 vs. ExPASy Swiss-Prot
Match: Q9XJ60 (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQM+ IEN TSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRGKLYEFA++
Sbjct: 1  MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61 RSQ 64
           +Q
Sbjct: 61 STQ 63

[Close]

BLAST of CmaCh08G009440 vs. ExPASy Swiss-Prot
Match: O82743 (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-22
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF++S
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

[Close]

BLAST of CmaCh08G009440 vs. ExPASy Swiss-Prot
Match: A2Z9Q7 (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 7.4e-22
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRG+T+++ IEN TSRQVTFSKRRNGL+KKAFELSVLCDAEVALI+FSPRG+LYEFA++
Sbjct: 1  MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61 RS 63
           S
Sbjct: 61 PS 62

[Close]

BLAST of CmaCh08G009440 vs. ExPASy TrEMBL
Match: A0A6J1KKV3 (MADS-box protein SOC1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494194 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.2e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. ExPASy TrEMBL
Match: A0A6J1KBW9 (MADS-box protein SOC1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494194 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.2e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. ExPASy TrEMBL
Match: A0A6J1HK51 (MADS-box protein SOC1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464292 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.2e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. ExPASy TrEMBL
Match: A0A6J1HMG1 (MADS-box protein SOC1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464292 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.2e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. ExPASy TrEMBL
Match: A0A5D3DLN1 (MADS-box protein SOC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00300 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-23
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFA+S
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: KAG6593700.1 (MADS-box protein SOC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: XP_022999842.1 (MADS-box protein SOC1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: KAG7026039.1 (MADS-box protein SOC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: XP_022964204.1 (MADS-box protein SOC1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. NCBI nr
Match: XP_022964203.1 (MADS-box protein SOC1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS
Sbjct: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 SMQ 63

[Close]

BLAST of CmaCh08G009440 vs. TAIR 10
Match: AT2G45660.1 (AGAMOUS-like 20 )

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-25
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKTQM+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEV+LIIFSP+GKLYEFA+S
Sbjct: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 NMQ 63

[Close]

BLAST of CmaCh08G009440 vs. TAIR 10
Match: AT4G11880.1 (AGAMOUS-like 14 )

HSP 1 Score: 110.5 bits (275), Expect = 7.3e-25
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVALIIFSPRGKLYEF++S
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61 RS 63
           S
Sbjct: 61 SS 62

[Close]

BLAST of CmaCh08G009440 vs. TAIR 10
Match: AT4G22950.1 (AGAMOUS-like 19 )

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGKT+M+ IENATSRQVTFSKRRNGL+KKAFELSVLCDAEVAL+IFSPR KLYEF++S
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

[Close]

BLAST of CmaCh08G009440 vs. TAIR 10
Match: AT5G62165.1 (AGAMOUS-like 42 )

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21
Identity = 48/63 (76.19%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA+++LIIFS RG+LYEF++S
Sbjct: 1  MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 DMQ 63

[Close]

BLAST of CmaCh08G009440 vs. TAIR 10
Match: AT5G62165.2 (AGAMOUS-like 42 )

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21
Identity = 48/63 (76.19%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANS 60
          MVRGK +M+ IENATSRQVTFSKRRNGL+KKA+ELSVLCDA+++LIIFS RG+LYEF++S
Sbjct: 1  MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61 RSQ 64
            Q
Sbjct: 61 DMQ 63

The following BLAST results are available for this feature:

BLAST of CmaCh08G009440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64645	7.9e-24	87.30	MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1	[more]
Q38838	1.0e-23	88.71	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=...	[more]
Q9XJ60	1.3e-23	85.71	MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
O82743	1.9e-22	86.67	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=...	[more]
A2Z9Q7	7.4e-22	80.65	MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS5...	[more]

BLAST of CmaCh08G009440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KKV3	8.2e-24	96.83	MADS-box protein SOC1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111494194 PE=...	[more]
A0A6J1KBW9	8.2e-24	96.83	MADS-box protein SOC1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111494194 PE=...	[more]
A0A6J1HK51	8.2e-24	96.83	MADS-box protein SOC1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464292 P...	[more]
A0A6J1HMG1	8.2e-24	96.83	MADS-box protein SOC1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464292 P...	[more]
A0A5D3DLN1	1.8e-23	98.36	MADS-box protein SOC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of CmaCh08G009440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593700.1	1.7e-23	96.83	MADS-box protein SOC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022999842.1	1.7e-23	96.83	MADS-box protein SOC1 isoform X1 [Cucurbita maxima]	[more]
KAG7026039.1	1.7e-23	96.83	MADS-box protein SOC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022964204.1	1.7e-23	96.83	MADS-box protein SOC1 isoform X2 [Cucurbita moschata]	[more]
XP_022964203.1	1.7e-23	96.83	MADS-box protein SOC1 isoform X1 [Cucurbita moschata]	[more]

BLAST of CmaCh08G009440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45660.1	5.6e-25	87.30	AGAMOUS-like 20	[more]
AT4G11880.1	7.3e-25	88.71	AGAMOUS-like 14	[more]
AT4G22950.1	1.4e-23	86.67	AGAMOUS-like 19	[more]
AT5G62165.1	2.2e-21	76.19	AGAMOUS-like 42	[more]
AT5G62165.2	2.2e-21	76.19	AGAMOUS-like 42	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 80.69 coord: 3..23 score: 59.41 coord: 38..59 score: 66.59
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 6.0E-40 score: 148.7
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..57 e-value: 1.5E-27 score: 94.9
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 30.599524
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..87 e-value: 1.5E-26 score: 94.0
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 3..61
None	No IPR available	PANTHER	PTHR11945:SF341	MADS-BOX PROTEIN SOC1	coord: 1..62
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..62
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 3..63 e-value: 8.30597E-39 score: 122.276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G009440.1	CmaCh08G009440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding