CmaCh08G006700 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G006700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Zinc finger Ran-binding domain-containing 2
Location	Cma_Chr08: 4134321 .. 4135214 (+)
RNA-Seq Expression	CmaCh08G006700
Synteny	CmaCh08G006700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCATCTCAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGCGAATCCAGATTCCTGGCTGACCTTGGGGTCTTTGGCGGCGGAAGTAGAGGAAGAAGCATTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTACGGTGGAGTTGCCTCCCCGGGCTCCGACGTCCGTCCTGGAGACTGGTACTGCGGCGTTGCCAACTGTGGAACCCACAACTTTGCGAACCGGTCGAGCTGCTTCGTATGCGGCGCGTTTAAGGATGAGTCAGCAGCGACGGCTGCCAGAGGTGGGTTTGATTCTGATGTGGCGCCACGTGGATCGAGGAGCTTTGGATTTGGAACCAATGGCTCACGTGGTGGGTCTTCTTGGAAGTCTGGTGACTGGATTTGTTCCAGGTCATTTCTTTTTTACCCTTTTTTTTTTTTTTTTTTGAATAATAGTTAATATTTTTTTCCATCTATTTAAAAGGTATAATATATTATAATTTATAATAATTTCTAAATCCGCTATCAAACACACATTTTTAACCACGAAATAATAATTAATTAATTGTGTTGATGGGTCATTACAGGTCAGGGTGCAACGTACATAACTTTGCAAGTAGAATGGAGTGTTTTCGATGCAATGCTCCCAGAGACCCGTTCTTCTGAAATATTTTCATCAAAATTTTCTATATTTTTCTTCGGATATAATAATACATAGTTTGGTTCGTATCATTTTGATTGTAATCTCTCGAGTTATAGTGATATTGAGTTGCGTTTTTGCTTTTCTTAGTAAATTTTATGCAGCAATTAAGCTCCTTTTTCGGTTAAAAAGTGCTTGTTCTCTGCTAATGAAATTTTATTGTAGGAC

mRNA sequence

ATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCATCTCAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGCGAATCCAGATTCCTGGCTGACCTTGGGGTCTTTGGCGGCGGAAGTAGAGGAAGAAGCATTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTACGGTGGAGTTGCCTCCCCGGGCTCCGACGTCCGTCCTGGAGACTGGTACTGCGGCGTTGCCAACTGTGGAACCCACAACTTTGCGAACCGGTCGAGCTGCTTCGTATGCGGCGCGTTTAAGGATGAGTCAGCAGCGACGGCTGCCAGAGGTGGGTTTGATTCTGATGTGGCGCCACGTGGATCGAGGAGCTTTGGATTTGGAACCAATGGCTCACGTGGTGGGTCTTCTTGGAAGTCTGGTGACTGGATTTGTTCCAGGTCAGGGTGCAACGTACATAACTTTGCAAGTAGAATGGAGTGTTTTCGATGCAATGCTCCCAGAGACCCGTTCTTCTGAAATATTTTCATCAAAATTTTCTATATTTTTCTTCGGATATAATAATACATAGTTTGGTTCGTATCATTTTGATTGTAATCTCTCGAGTTATAGTGATATTGAGTTGCGTTTTTGCTTTTCTTAGTAAATTTTATGCAGCAATTAAGCTCCTTTTTCGGTTAAAAAGTGCTTGTTCTCTGCTAATGAAATTTTATTGTAGGAC

Coding sequence (CDS)

ATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCATCTCAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGCGAATCCAGATTCCTGGCTGACCTTGGGGTCTTTGGCGGCGGAAGTAGAGGAAGAAGCATTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTACGGTGGAGTTGCCTCCCCGGGCTCCGACGTCCGTCCTGGAGACTGGTACTGCGGCGTTGCCAACTGTGGAACCCACAACTTTGCGAACCGGTCGAGCTGCTTCGTATGCGGCGCGTTTAAGGATGAGTCAGCAGCGACGGCTGCCAGAGGTGGGTTTGATTCTGATGTGGCGCCACGTGGATCGAGGAGCTTTGGATTTGGAACCAATGGCTCACGTGGTGGGTCTTCTTGGAAGTCTGGTGACTGGATTTGTTCCAGGTCAGGGTGCAACGTACATAACTTTGCAAGTAGAATGGAGTGTTTTCGATGCAATGCTCCCAGAGACCCGTTCTTCTGA

Protein sequence

MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPRGSRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF

Homology

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BLAST of CmaCh08G006700 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.8e-06
Identity = 49/165 (29.70%), Postives = 62/165 (37.58%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSYGG 62
           RPGDWNC  C   NFQRR  C RC              G    S ++ S++ S    YG 
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFP-----------GPTHVSAATGSNTFSPDFPYGN 402

Query: 63  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPRGSR 122
               GS               +H  AN              +    + G ++      SR
Sbjct: 403 SYGNGS---------------SHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSR 462

Query: 123 SFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPR 168
           SFG       G   +++GDW C   GC  HNFA  + C RC A R
Sbjct: 463 SFG-------GNVPFRAGDWKCGSEGCGYHNFAKNVCCLRCGASR 474

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BLAST of CmaCh08G006700 vs. ExPASy TrEMBL
Match: A0A6J1KI84 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 GN=LOC111494659 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.1e-94
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY 60

Query: 61  GGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPRG 120
           GGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPRG
Sbjct: 61  GGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPRG 120

Query: 121 SRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 172
           SRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF
Sbjct: 121 SRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 171

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BLAST of CmaCh08G006700 vs. ExPASy TrEMBL
Match: A0A6J1HKM2 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662 GN=LOC111464408 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.5e-87
Identity = 162/174 (93.10%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVF---GGGSRGRSISSSSSSSSSS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLG+F   GGGSRGRSI     SSSSS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSI-----SSSSS 60

Query: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVA 120
           SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFD DVA
Sbjct: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVA 120

Query: 121 PRGSRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 172
           PRGSRSFGFG+NGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD FF
Sbjct: 121 PRGSRSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 169

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BLAST of CmaCh08G006700 vs. ExPASy TrEMBL
Match: A0A6J1DB61 (transcription initiation factor TFIID subunit 15-like OS=Momordica charantia OX=3673 GN=LOC111018697 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.6e-65
Identity = 131/170 (77.06%), Postives = 140/170 (82.35%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY 60
           MNRPGDW+CRSCQHLNFQRRECCQRCG+S+F    GVF GG  GR    ++  SS  SSY
Sbjct: 1   MNRPGDWHCRSCQHLNFQRRECCQRCGDSKF----GVFAGGGGGR---LATGRSSVPSSY 60

Query: 61  GGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAA--TAARGGFDSDVAP 120
           GGVASPGSDVRPGDWYCGV NCGTHNFA+RSSCF CGAFKDESAA    A GGFD D++ 
Sbjct: 61  GGVASPGSDVRPGDWYCGVGNCGTHNFASRSSCFKCGAFKDESAAAGAGAGGGFDFDMS- 120

Query: 121 RGSRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 169
           R SR FGFGTN SR GSSWKSGDWIC+RSGCN HNFASRMECFRCN PRD
Sbjct: 121 RASRGFGFGTNASRAGSSWKSGDWICTRSGCNEHNFASRMECFRCNDPRD 162

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BLAST of CmaCh08G006700 vs. ExPASy TrEMBL
Match: A0A0A0K718 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433230 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.8e-59
Identity = 127/180 (70.56%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLA--DLGVFGGGSRGRSISSSSSSSSSSS 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGE +     +LGVF             SS S  S
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVF-------------SSRSGRS 60

Query: 61  SYGGVA--SPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAAR---GGFD 120
           SYGG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA+A     GGFD
Sbjct: 61  SYGGGVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGGGFD 120

Query: 121 SDVAPRGSRSFGFGTNG--SRGGSS-WKSGDWICSRSGCNVHNFASRMECFRCNAPRDPF 171
            D   R  RSFGFG++   SRG SS W SGDWICSRSGCNVHNFASRMECFRCNAPRD F
Sbjct: 121 FDATCRAFRSFGFGSSNATSRGASSPWLSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 167

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BLAST of CmaCh08G006700 vs. ExPASy TrEMBL
Match: A0A5D3CJI6 (Transcription initiation factor TFIID subunit 15b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002200 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.9e-57
Identity = 124/180 (68.89%), Postives = 129/180 (71.67%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLA--DLGVFGGGSRGRSISSSSSSSSSSS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGE +     +LGVF G             +  SS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSG------------RAGRSS 60

Query: 61  SYGG--VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATA-----ARGG 120
           SYGG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA+A       GG
Sbjct: 61  SYGGGIAYSPGSDVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGG 120

Query: 121 FDSDVAPRGSRSFGFGTNGSRGG-SSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPF 171
           FD DV  R  RS  FG   SRG  S W SGDWICSR GCNVHNFASRMECFRCNAPRD F
Sbjct: 121 FDFDVTCRAFRS--FGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 166

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BLAST of CmaCh08G006700 vs. NCBI nr
Match: XP_023000400.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima])

HSP 1 Score: 354.8 bits (909), Expect = 4.3e-94
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY 60

Query: 61  GGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPRG 120
           GGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPRG
Sbjct: 61  GGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPRG 120

Query: 121 SRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 172
           SRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF
Sbjct: 121 SRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 171

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BLAST of CmaCh08G006700 vs. NCBI nr
Match: XP_022964373.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >KAG7025771.1 hypothetical protein SDJN02_12269 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 162/174 (93.10%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVF---GGGSRGRSISSSSSSSSSS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLG+F   GGGSRGRSI     SSSSS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSI-----SSSSS 60

Query: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVA 120
           SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFD DVA
Sbjct: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVA 120

Query: 121 PRGSRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 172
           PRGSRSFGFG+NGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD FF
Sbjct: 121 PRGSRSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 169

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BLAST of CmaCh08G006700 vs. NCBI nr
Match: KAG6593432.1 (hypothetical protein SDJN03_12908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 162/174 (93.10%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVF---GGGSRGRSISSSSSSSSSS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLG+F   GGGSRGRSI     SSSSS
Sbjct: 9   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSI-----SSSSS 68

Query: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVA 120
           SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFD DVA
Sbjct: 69  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVA 128

Query: 121 PRGSRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 172
           PRGSRSFGFG+NGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD FF
Sbjct: 129 PRGSRSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSFF 177

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BLAST of CmaCh08G006700 vs. NCBI nr
Match: XP_023514793.1 (uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329.3 bits (843), Expect = 1.9e-86
Identity = 161/174 (92.53%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVF---GGGSRGRSISSSSSSSSSS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLG+F   GGGSRGRSI     SSSSS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSI-----SSSSS 60

Query: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVA 120
           SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAA GGFD DVA
Sbjct: 61  SSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAAGGGFDFDVA 120

Query: 121 PRGSRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 172
           PRGSR+FGFG+NGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF
Sbjct: 121 PRGSRTFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPFF 169

[Close]

BLAST of CmaCh08G006700 vs. NCBI nr
Match: XP_038899251.1 (uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_038899252.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 139/172 (80.81%), Postives = 144/172 (83.72%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGE +  A+LGVFGG  RGR+I          SSY
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGELKLGAELGVFGG--RGRAI---------PSSY 60

Query: 61  GGVA-SPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPR 120
           GGVA SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA A  GGFD DV  R
Sbjct: 61  GGVAYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAAAACGGGFDFDVTCR 120

Query: 121 GSRSFGFG-TNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDPF 171
           GSRSFGFG +NG RGGSSW SGDWICSRSGCNVHNFASRMECFRCNAPRD F
Sbjct: 121 GSRSFGFGSSNGLRGGSSWMSGDWICSRSGCNVHNFASRMECFRCNAPRDLF 161

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BLAST of CmaCh08G006700 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-46
Identity = 101/174 (58.05%), Postives = 117/174 (67.24%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY 60
           M+RPGDWNCRSC HLNFQRR+ CQRCG+SR        G G  G  +   +    + S++
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSR-------SGPGGVG-GLDFGNFGGRAMSAF 60

Query: 61  GGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGG------FDS 120
           G   + GSDVRPGDWYC V NCGTHNFA+RS+CF CG FKDE+ A    GG      FD+
Sbjct: 61  G--FTTGSDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDA 120

Query: 121 DVAPRGSRSFGFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 169
           D+     RS      G+ G SSWKSGDWIC+R GCN HNFASRMECFRCNAPRD
Sbjct: 121 DI----MRS---RVPGNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157

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BLAST of CmaCh08G006700 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 182.6 bits (462), Expect = 2.7e-46
Identity = 102/175 (58.29%), Postives = 113/175 (64.57%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSY 60
           MNRPGDWNCR C HLNFQRR+ CQRC E R          G     + S       SSS+
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPR---------PGGISTDLLSGFGGRPVSSSF 60

Query: 61  GGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDE---SAATAARGGFDSDVA 120
           G   + G DVRPGDWYC + +CGTHNFANRSSCF CGA KDE   S+A A  G  D +V 
Sbjct: 61  G--FNTGPDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVG 120

Query: 121 PRGSRSFGFGTNGSRGG----SSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 169
           PR    FGFG + S GG    S WKSGDWIC RSGCN HNFASR ECFRCNAP++
Sbjct: 121 PRRG-LFGFGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

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BLAST of CmaCh08G006700 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 64/164 (39.02%), Postives = 86/164 (52.44%), Query Frame = 0


Query: 5   GDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFGGGSRGRSISSSSSSSSSSSSYGGVA 64
           GDW C +CQH NF++RE CQ+CG  +F        GG              S+  Y    
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKF--------GG-----------VDVSTYLYN--- 65

Query: 65  SPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDSDVAPRGSRSF 124
              ++V  GDWYCG  NCG+HN+A+R+SC+ CG  K E                 G++  
Sbjct: 66  --RTEVMAGDWYCGALNCGSHNYASRTSCYRCGMIKVEYTEQY-----------YGAQMV 125

Query: 125 GFGTNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 169
            +G +G+     WK+GDW+C R GC VHN+ASR ECF+C   RD
Sbjct: 126 AYGNDGAACPPGWKTGDWVCPRVGCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of CmaCh08G006700 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 61/214 (28.50%), Postives = 82/214 (38.32%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGVFG--GGS---------RGRSISSSS 62
           R GDW C  C + N+  RE C++CG+S+ +A L      G S         RG       
Sbjct: 48  RIGDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQP 107

Query: 63  SSSSSSSSYGGVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAF------KDESAA 122
            S  + S+    AS   + R GDW C    CG HN+++R  C  C             A+
Sbjct: 108 GSLLAFSNATNQASVHKEWRSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGTKRLAS 167

Query: 123 TAARGGFDSDVAPRG---------------SRSFGFGTNG----------------SRGG 169
            A    +DS    +G                 S G  +N                   G 
Sbjct: 168 EALAHEWDSKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGV 227

The following BLAST results are available for this feature:

BLAST of CmaCh08G006700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	7.8e-06	29.70	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of CmaCh08G006700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KI84	2.1e-94	100.00	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1HKM2	5.5e-87	93.10	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1DB61	1.6e-65	77.06	transcription initiation factor TFIID subunit 15-like OS=Momordica charantia OX=...	[more]
A0A0A0K718	2.8e-59	70.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433230 PE=4 SV=1	[more]
A0A5D3CJI6	5.9e-57	68.89	Transcription initiation factor TFIID subunit 15b-like OS=Cucumis melo var. maku...	[more]

BLAST of CmaCh08G006700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000400.1	4.3e-94	100.00	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]	[more]
XP_022964373.1	1.1e-86	93.10	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >KAG7025...	[more]
KAG6593432.1	1.1e-86	93.10	hypothetical protein SDJN03_12908, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023514793.1	1.9e-86	92.53	uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Cucurbita pepo su...	[more]
XP_038899251.1	1.9e-70	80.81	uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_03889...	[more]

BLAST of CmaCh08G006700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	1.6e-46	58.05	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	2.7e-46	58.29	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	1.1e-26	39.02	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	1.2e-09	28.50	zinc finger (Ran-binding) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 5..29 e-value: 0.0055 score: 25.9 coord: 140..166 e-value: 8.5E-8 score: 41.9 coord: 73..99 e-value: 1.6E-4 score: 31.0
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 138..167 e-value: 1.0E-10 score: 40.7 coord: 71..98 e-value: 7.7E-6 score: 25.1
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 75..96
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 142..163
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 138..169 score: 10.816439
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 71..102 score: 9.879186
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 8.896765
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..31 e-value: 1.1E-7 score: 33.0 coord: 65..103 e-value: 1.7E-11 score: 45.2 coord: 131..169 e-value: 5.4E-13 score: 50.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..64
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..169
None	No IPR available	PANTHER	PTHR23111:SF74	OS02G0203700 PROTEIN	coord: 1..169
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 64..103
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 131..168
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G006700.1	CmaCh08G006700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0044267	cellular protein metabolic process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003723	RNA binding