CmaCh08G006650 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G006650
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPhotosystem II D2 protein
LocationCma_Chr08: 4024178 .. 4031771 (+)
RNA-Seq ExpressionCmaCh08G006650
SyntenyCmaCh08G006650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGATGCTTCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGGAAGAAACTTATTCAATGGTCACTGCTAACCTCTTTTGGTACCAAATTTTTGGGGTTGTTTTTTCCACTAAAGGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGCTTTATGGCTGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGGTTGTCAAGAAATCCGTGCAGCAGGGGAAGATCCTGAATTTGAGACTTTCTATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATTAAAACACCTTCTATTCCCTGAGGAGGTTCTATACCCTGGGGAAAGGCTCTTTCTTTATTTAATGGAACTTTCTAGCTGGTGTCGTGACCAAGAACCGGTTTGTTTCGCTTGGTGTGCCGGGAATGCCCGACTTATCCATTTATCCGGTAAACTACTGGGGGCTCATCTAGCCCATGCCTGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCCGAGAAAGAAGCCCATGCATGAACAAGGATGAATTTGACTTCCCTTCCCCACCTAGCTACTCTAACTCTACTCTAGGTTGGGGCATAGGTCCTGGTGGAGAAGTTATAGACACCTTTCCGTATTTTGTGTCCGTCTGGAGTACTTCACTGAATTTCCTCCGTCTGCAGTATTGGGTTTTGGCGCTATGTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCCTTATTCGGTTATGTGTGGAAAGATAGATAGAAAAAAAATGACTACCATTTGGTTGGGGTATTCACTTCATTTTGTTAGGTATAGGTGCTTGCTTTTCTTCTAGTATTCAAAGCTCCTTACCTGATTTTGGGGGCGTATATGATACCTGGGCTCCGGGGGGAGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGCCTGTGATATTTGGTTATTTACTCAACCTTGAGGGAGAGAGAGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTCGTTGGGGGGCATGTATGGTTAGTTTCCATTTGTATACTTAGGGGAAGAAATTTGGCATATCTTAACTAAACCGTTTGCATGGGCTCGCCCTTGTATGGTTTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCCGTTTTGGCTTTTATTGCTTGTTTTGTCTGGTTCAATAATACTTATTCGAGTGAGTTTTACGGGCCGGCTGGACCCGAAGCTTCTCACTTCTCAAGCTCAAGCATTTCCATTTCTAGTTAGAGACCAACGCCTTGGAGCTAAGGTTGGATCAAGGACCTACTGCTACTGGTTTCGGTAAATATCTAATGCGTTCTCCGCCGGTAGAAGTCATTTTGGGGGGAGGGAGAGACTATGCGTTTTTGGGATCCGCGTGCTCCTTGGTTAGAACCACTAAGTAAGGGGGCCTAATGGTTTGGACTTGAGTAGGCAAGCAAAGATATACAACCTTGGCAAGAATGACGTTCCGCGGAATATATGCCCCATGCGCTCCTTTAGGTTCTTTCAATTCCGGGGGTGGCGTAGCTACCGAAATTCATGCAGTCAATTATGTCTCTCCTTGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATCCGTGTAGGTCATGAAAAGAACAGGTTCAAATGATCAATTCCTTTTTCCTTTCTTCATTTCTATCTACTCTTTGTTTTCTATTTTGGCTTGGCTATCTATCCCACCTAGCCGAGTCATTCCCCTTTATGATACTGAGCCGGGGAAACAAACCCAATCAAATAAAGAATCTATTTGCCGAGCAAAAGGAGAGAGAGGGATTCGAACCCTCGATAGTTCTTTGTTTCGAACACTATACCAGACCGGTTTTCAAGCCCAGAGCTATCAACCACTCGGCCATCTCTCCGAAATAGAATTTCCATTTTCTTTATATTTCATCCCATCGAATAGAATAGAACATTGACATATAAGTTGATACCATTATAGTCTAGACTATATCTCAGTAAATCTAGAAGTCTATTTATATGGATCTAGATATATATGATCCAGTATCCCCTTATTTCTGAATGAAAAAAAGACTACTACTCTCAATCCCATACATGCTCAAGTCTTAAAAAAGAAGGAAGTAATATAGAAGAATACATTTCAATCTCTACCTGGTACATTTTATCAAAATGGTGGCGGACTGTTAAGGGATCAAATAGTCTTTTTAATAATATGGAGGATTAGAAGAGAAGCATGCATGATTATTGATTTTCAATTGGCTCATTAATTAGTACTTCAATAATCTTACTGGTTAGTGTGCCCGTTGCATTTGCTTCTCTTGGGGGTTGGTTGGCGAACAGTAGTATTTTCGGGTTGGTCGGCGAACAAGTAGTATTTTCCAGTACAATTAGTTTGGTTGGTTGGTGGGTATCCTTAATTCTCTTATCTCTTGAACCTCTTCGTTCTTGATACAAAAATGAAATGAAACGCGACCCTCCCCTAATTCTTTTCCTCCCATCCGTAAAGAAAACAAAGCTAATATTAATAGTCATTATAGTTACCAAGATCAAACCTCTTTTGAGACAAAACAATGAGATTTAGCGGAGACAAGATTGGAACGCGTGACTGAAAGGTTATGAGCCTTGCGAGCTACCAAGCTGCTCCACCCCGCGAAGAGAAGAACTGTGAACTAATAGACAAAGAAAGATTGAATGCGTGCCCCTATAACCATATCTTTACAAATAGAATAGTCGAGATTTATATAGAGAATGGTAAAGAAAGAAAGAAAGAAATGGGTCCTGATCATAGAAATGAATAGAAAGGGCTATTTGAATCCTTACTTGATCTTCTTCCTTCCCCCAGGCAACAAGCATGCATGAACCATTTCCCGAAGTATAAGTCAGTATGTGTCCAGATAGCCCAAAGAAAGTCTCGATCGTTAGCTCTCAGTTTTCCGGTGAAAAAACAACGTCGGTCGATGAAGACGTGTGGGTGCACTATTACGCGGTGGGGATTGTCACTTGCCATGAATCTCCCATTTCTCACTCAAGGATGGAACTTTGCTTATTTCTTTTTTTAAGGATCGACGAATCAGATTTGTGTTCCAATTTTGCCCTCTTCTTCTCCCTCTTCCTATTACACTTTTCCTTGCCTTAATGATTCCATTCCTAGTATTATCAATGATACAAGTCAGATCCTAGATGTAGAAATATAAGAAAGAAGATCCCCTTCTCCAAAGAAATGAGATTTGATAGGATACAACACATACAAAATGAACCAAATTAGCCTGATGTAGAGGCAGAAAGCCGCATAAGTCAATATATAACCTACGGAAAAAAGGGCTAATCCAACAAATCTTGCACAATGGAAAGAAAGAGCCACTGGGTTGGTTCTCTCTCCAATCAAATTAGCCAAGGGTGTGCGTTCGTGAGCCCACGCTAAAGTTTCAATCAATTCTTCTTGCCAATACCCCCCCGCCAGGAAATGAAGAATAGAAATCCAGTAGCCCAAACAAGATGTCCAAATAAGAACATCCACGCCCCCGGACTGATAAACTATTCATACCAACAAGGATTAATTCTAATTATCCCATTGAGAAGTTGTGAAGAGTTTAACCATAGAGAATGTCTTAACCATCCCAGCAAATAAGTAAGTGGAAGATGAATGAAACTGTGAAACATTACCTGCCATACATAATGTGATGTGCTTCCAGTGCCAATCTAAAGTAACCAATGGTATTTCACATCCAGAAAACGGCCAAAGGCGTCCCAAGCCGAAATATAACAAGTACCACCTCGTCTCGGACAAAGGAAAACTATAACCAAAATCCTTTTTATCCGGCATTCATTTGGAACCATGTCCATCTAAACCACCTTTTACTAAGATCAATGTAGTTGTATGTAACCCTAAAGCAATAGCATGATGAACACATCAGTCTCCGGGCCCTATTGTGAAGAATAGTGCATTACTATTTAACAACATTGAACGTCAGGCCGCTTGTTGAAGATAAAAGGACATCGAACCTATATTCAGTTTGACCATGAGCAGATTGAATCTATTGGGCAAATATGGGTGTCGATTAAGATTTCTTTCTCTAGAGTACCAAAATCAAGCATGACATCATTATGAACGAACGTAAAGCCCCAAAGTATGGAACCACCCCAGAAAAAGGCTGGCCCAACCTCAATGGGATATGTATATGATAGCTTCTTTTCTTTATGGTCTAACATTCTTGCCAATACATTACATTATCCTCATTCTGTTCGGGATTGTAATCTCTAGAATATAGCTCCATGAGCAAAAGCTCCTGTCTGTCATAATTCATCCTGCTATGTATTGGTGATGGGTATATAACGCAGCTTGAGTAGAGTAGTCGAGTCGTCTTCTTGTGCTATGAACGCATAAGCAGGTAAAGAGTACATGTGTTGAGCTACCAAGGAAGTCAGTAATGTAATCTAATAACCCCTAAAGAGGGTAAAGCAAGGCCTAATTGAAAATGAAGCGAATTATTGATTGTGTCATAACTTTATGTCCACGCCCCAATCGTCCCCCAAATATGTGCTTCTAAAAGATCTTTTATACTTTGTCCAATCCCGAAGTTAGTTCTATCTATACATATGACCAGCAACAAGAAAAAGAAATGCAATAGCTAAATGATGATGAGTCATATCAGTCAGCCAGAAACTTTGTGGATGGAGAATCCCCAGAGAAAGAAGGGTTAGAATGGCAGTTCCTGCTCCTTCGACAGTACCAAATCAATGATTATTTGAATCGGGTGAGCATAAAGATTACACTGACCCGGCTAAAGTGGTCCTAATCCTTGGGGATGTGACAATACGTTTAAGAAATTCTTCCAACATATTGTCCCCTGGATGCAGGAATAGCGACATGGCTGAAATGGCCTGTCCAAGCCAAGGAATTGACTCCGAATGAATAGTCCTGACAAATGATGACTAAGACAAGATTCGGCATTTTGAAACCACGAAAGGCTCGCTTTCCGTTTCAGTTGTAGGTGTAACCAACCCGCTATGAAAGATATGGCAGAAAGAAAGAATAGAAAAAGAAGAGCTCCCCTCCCGTATAAAGATCCCCCTTAGTACGTAACTTGATTGTATACCACCACTGAGAAAGAAAGAAACACCAGAATAAGCGATATTCACTAGGAGCACCCCCTTGAGTAAAAGCTTTTCCGGTTGACCGAGGATCCCAAATTGCAAATAGGTCTTACATGGAAAGGGTCTTGCTTGTACCCATGCTTCAAAATTGCCTTGCCAAGCTACATGAAAGAGACTTCCAGAAGTATACACAGACAAATTCTTGCTAATTGCCCGAAATGCGAAGGAAGCAAAAAGATGATGATAAAGACGTTCTTCAGTAATATCATCATGTCTTTCGAAGTCAGGCGCAGTAGCAATACCAAACCAAATACCACAAGTAGTGGGGTCCTGAGCTAAGCCTTCGCTAAACCTTGGAAATCCTAGTGCCATAATGCAAATCCTCCTAGCCATTATCCGACTGCAATAATTCTTGCTAAGAAGAGAAAGAGCGCCTATGTTGTGGCAATTCCACCCAGAAGGTAAGGTAAGGTAATGGATGGGTTACTCCTACAGCACGTCCTTGGACAATGCTCAATCAAGGCTCTAGGCTGAGAGTAGCAGGAGCAACTTTTCATTGATTATGAGCCCAAACCGCTGGATTCAATAAGTTCTTGCCAATAACCACGCCTGCAGAATAGAAAGATGAAACTCAAAGCCCATACAAAAATGAGCACCTAGGAAAAACGAACGGGCCATATGCGGATAATGAAGAAAGAAGAACCATAAGACTGAATTACCTGGCATGCCTGTGCCTATAAGAAATCGCGAAGCCACCCATTAATAGTAATGATGGAACTCTGCGCAAAGTTTCCTCCCGTAATATGAGTTACTACCCCTTGATCACTTACACTACCCCAAACATCTGACTGCATTTTCCACCGTAAATGGCAGGCATATTACTTACTACCGAAATGGAATTGTCCATCCAAAATAGCCCTAAGAAGACATGATCCCAAGCAAGCGGATACTTGACATCTACCCCCTCTTCCCGGTCCATCACAAGGGAAACGAAACCCAAGATTAGATTTGATTTGCTTTATTCGGTATCAAACGCGAGCTACGAGAAAATGGAACCCCTTGAAGGAGTATCAATACCGTTACATGAATCGTAAATGCCTGACTATGATGTACCAAAGAATCTGCGGCTCCTACTGGAATAGGTAACAAAGCCACTTTGCCGCCCACTGCCACTAAATCACCACCCCCCCAAGTCAAACTGGTGCCTGTTGTTGGACCTGGGGCCATTATACTAGGTGCTAAAGCATGGGTGTTTTGTATCCTGTATAGGGGTATCGGAAAAGATATCTTGGGGCCGCCCTAAAGCACTCATGGTATCATTATGAATATACCAAAACTGTGAAAGCCTCAAAATATCCATACCCTCCCAGTTGAGATGTGATATGATTGCATCGTGATGCCTAAGTCCATGAGATCTAATAAATCGTTGTTTGTAGCGAGTAGTTGGATCATAGTCTCTTACCATCCATAAAAATGGCTGCATGCGTGGCAACACCAAGAGAAATCTACTGTGATGTGTGAACAATGAAAGTTGTGTCCCATAGTCAGTAGCTAGGGATAAGGGGGCATCGCATACATATGGTGAGCTACAATCATGGTGAAAGAGCCTAACTTAGCTAGGTGGAATAGATAATGGAGCATGGCATTACGTTGTTAGGATCTCATATAGTCCTTTATGACCCTGGCCTGTAAATGGACCTTGACGAGCCTCCCTCTCAAATATCTTTTATACCCTTCCCAATGCCCCGGTTGGTCCTATCTATACATGTGACCTGCTATCAGGAAAAGAATAGCAATAGCTAAATGATGGTGTGCAATATCGGTTAACCATAGACCACCGGTTACTGGGTCTAATCCTCTGCGAAAAGTCAGAAATTCCGTTTTGACCAATTCCAAGTGAAAAATGGGGTTGCTCCCTCAACTTTACTAGGAGAAAGTTGCGCCAAAAGATCCCGATTCAAGAGAAATTCATGAGGAAGTGGAATCTCTTTAGGATCTACTCCAGCATCATTTAGAAATTGGTTAATCGGTAAAGATAGGTGTACTTGATGTCCCGCCCAAGAAAGAGCCCCAAGTCCTAGCAGACCCGCTACGCTAAATGGTGATTGAACATGGATTCTACATCTTGCAAGCCAATTTTGGAGCAGCCTTGTGATAATGAAACCAACCGGCAAAAAGCATTAAGGCTGAAAAGACTAATGCACCAATTGTGGTACAATAAAGTTGTAATTCACTAGTTATTCCAGATGCTCGCCACATGTGAAAAAACCCAGAGGTTATTTGTATTCCTCGAAACCCCCCGCCTACATCACCATTCAATATTTCTTGGCCCACTATTGGCCAAACCACCTGGGCACTAAGGCCAATGTGAGTAGGATCGCCTAG

mRNA sequence

ATGGTGATGATGCTTCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGGAAGAAACTTATTCAATGGTCACTGCTAACCTCTTTTGGTACCAAATTTTTGGGGTTGTTTTTTCCACTAAAGGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGCTTTATGGCTGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGGTTGTCAAGAAATCCGTGCAGCAGGGGAAGATCCTGAATTTGAGACTTTCTATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATTAAAACACCTTCTATTCCCTGAGGAGGTTCTATACCCTGGGGAAAGGCTCTTTCTTTATTTAATGGAACTTTCTAGCTGGTGTCGTGACCAAGAACCGGTTTGTTTCGCTTGGTGTGCCGGGAATGCCCGACTTATCCATTTATCCGGTGCTTGCTTTTCTTCTAGTATTCAAAGCTCCTTACCTGATTTTGGGGGCGTATATGATACCTGGGCTCCGGGGGGAGGAGATTCAGCCAGAAACTTTGTGGATGGAGAATCCCCAGAGAAAGAAGGGTTAGAATGGCAGTTCCTGCTCCTTCGACAGTACCAAATCAATGATTATTTGAATCGGTGCCATAATGCAAATCCTCCTAGCCATTATCCGACTGCAATAATTCTTGCTAAGAAGAGAAAGAGCGCCTATGTTGTGGCAATTCCACCCAGAAGATGCTCGCCACATGTGAAAAAACCCAGAGGTTATTTGTATTCCTCGAAACCCCCCGCCTACATCACCATTCAATATTTCTTGGCCCACTATTGGCCAAACCACCTGGGCACTAAGGCCAATGTGAGTAGGATCGCCTAG

Coding sequence (CDS)

ATGGTGATGATGCTTCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGGAAGAAACTTATTCAATGGTCACTGCTAACCTCTTTTGGTACCAAATTTTTGGGGTTGTTTTTTCCACTAAAGGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGCTTTATGGCTGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGGTTGTCAAGAAATCCGTGCAGCAGGGGAAGATCCTGAATTTGAGACTTTCTATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATTAAAACACCTTCTATTCCCTGAGGAGGTTCTATACCCTGGGGAAAGGCTCTTTCTTTATTTAATGGAACTTTCTAGCTGGTGTCGTGACCAAGAACCGGTTTGTTTCGCTTGGTGTGCCGGGAATGCCCGACTTATCCATTTATCCGGTGCTTGCTTTTCTTCTAGTATTCAAAGCTCCTTACCTGATTTTGGGGGCGTATATGATACCTGGGCTCCGGGGGGAGGAGATTCAGCCAGAAACTTTGTGGATGGAGAATCCCCAGAGAAAGAAGGGTTAGAATGGCAGTTCCTGCTCCTTCGACAGTACCAAATCAATGATTATTTGAATCGGTGCCATAATGCAAATCCTCCTAGCCATTATCCGACTGCAATAATTCTTGCTAAGAAGAGAAAGAGCGCCTATGTTGTGGCAATTCCACCCAGAAGATGCTCGCCACATGTGAAAAAACCCAGAGGTTATTTGTATTCCTCGAAACCCCCCGCCTACATCACCATTCAATATTTCTTGGCCCACTATTGGCCAAACCACCTGGGCACTAAGGCCAATGTGAGTAGGATCGCCTAG

Protein sequence

MVMMLQIHSVLLTQLKLKEETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGCQEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLYLMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSIQSSLPDFGGVYDTWAPGGGDSARNFVDGESPEKEGLEWQFLLLRQYQINDYLNRCHNANPPSHYPTAIILAKKRKSAYVVAIPPRRCSPHVKKPRGYLYSSKPPAYITIQYFLAHYWPNHLGTKANVSRIA
Homology
[Close]
BLAST of CmaCh08G006650 vs. ExPASy Swiss-Prot
Match: Q4FFP4 (Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.5e-31
Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERL 136
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL  G  L
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh08G006650 vs. ExPASy Swiss-Prot
Match: Q3V539 (Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.5e-31
Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERL 136
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL  G  L
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh08G006650 vs. ExPASy Swiss-Prot
Match: A4QJB0 (Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.5e-31
Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERL 136
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL  G  L
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh08G006650 vs. ExPASy Swiss-Prot
Match: A4QJJ4 (Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.5e-31
Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERL 136
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL  G  L
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh08G006650 vs. ExPASy Swiss-Prot
Match: Q70Y08 (Photosystem II D2 protein OS=Amborella trichopoda OX=13333 GN=psbD PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.5e-31
Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERL 136
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL  G  L
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVLPRGNAL 353

[Close]
BLAST of CmaCh08G006650 vs. ExPASy TrEMBL
Match: A0A343UQJ3 (Photosystem II D2 protein OS=Populus wilsonii OX=179741 GN=psbD PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-37
Identity = 95/157 (60.51%), Postives = 108/157 (68.79%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPE   YP E LF  
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEVRFYPVETLFNG 361

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSI 176
            + L+   RDQE   FAW AGNARLI+LSG    + +
Sbjct: 362 TLALAG--RDQETTGFAWWAGNARLINLSGKLLGAHV 391

[Close]
BLAST of CmaCh08G006650 vs. ExPASy TrEMBL
Match: A0A6J1IGQ7 (Photosystem II D2 protein OS=Cucurbita maxima OX=3661 GN=LOC111474790 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 7.1e-37
Identity = 96/157 (61.15%), Postives = 109/157 (69.43%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL P   LF  
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVL-PRGNLFNG 361

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSI 176
            + L+   RDQE   FAW AGNARLI+LSG    + +
Sbjct: 362 TLALAG--RDQETTGFAWWAGNARLINLSGKLLGAHV 390

[Close]
BLAST of CmaCh08G006650 vs. ExPASy TrEMBL
Match: A0A4Y7JY71 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_008620 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 109/221 (49.32%), Postives = 123/221 (55.66%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW  IFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 116 EETYSMVTANRFWSHIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 175

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL P       
Sbjct: 176 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVLPP------- 235

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLS----GACFSS-----SIQSSLP--------- 196
              L+   RDQE   FAW AGNARLI+LS    G  + S     +++ S P         
Sbjct: 236 ---LAG--RDQETTGFAWWAGNARLINLSVLGFGGIYHSLLGPETLEESFPFFGYVWKDR 295

[Close]
BLAST of CmaCh08G006650 vs. ExPASy TrEMBL
Match: A0A6P5GV07 (Photosystem II D2 protein OS=Ananas comosus OX=4615 GN=LOC109726479 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 95/157 (60.51%), Postives = 109/157 (69.43%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SA+GVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL P   LF  
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVL-PRGNLFNG 361

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSI 176
            + L+   RDQE   FAW AGNARLI+LSG    + +
Sbjct: 362 TLALAG--RDQETTGFAWWAGNARLINLSGKLLGAHV 390

[Close]
BLAST of CmaCh08G006650 vs. ExPASy TrEMBL
Match: A0A6P5MJ25 (Photosystem II D2 protein OS=Arachis duranensis OX=130453 GN=LOC110274666 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.1e-36
Identity = 95/157 (60.51%), Postives = 109/157 (69.43%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRA+DF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAFDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL P   LF  
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVL-PRGNLFNG 361

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSI 176
            + L+   RDQE   FAW AGNARLI+LSG    + +
Sbjct: 362 TLALTG--RDQETTGFAWWAGNARLINLSGKLLGAHV 390

[Close]
BLAST of CmaCh08G006650 vs. NCBI nr
Match: YP_009470539.1 (PsbD [Populus wilsonii] >AVF96968.1 PsbD [Populus wilsonii])

HSP 1 Score: 166.8 bits (421), Expect = 3.0e-37
Identity = 95/157 (60.51%), Postives = 108/157 (68.79%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPE   YP E LF  
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEVRFYPVETLFNG 361

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSI 176
            + L+   RDQE   FAW AGNARLI+LSG    + +
Sbjct: 362 TLALAG--RDQETTGFAWWAGNARLINLSGKLLGAHV 391

[Close]
BLAST of CmaCh08G006650 vs. NCBI nr
Match: XP_028785496.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC114741409 [Prosopis alba])

HSP 1 Score: 166.0 bits (419), Expect = 5.1e-37
Identity = 97/157 (61.78%), Postives = 110/157 (70.06%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL P   LF  
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVL-PRGNLFNG 361

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSI 176
            + L+S  RDQE   FAW AGNARLI+LSG    + +
Sbjct: 362 TLALTS--RDQETTGFAWWAGNARLINLSGKLLGAHV 390

[Close]
BLAST of CmaCh08G006650 vs. NCBI nr
Match: XP_016648579.1 (PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Prunus mume] >XP_016649644.1 PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Prunus mume])

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-36
Identity = 96/157 (61.15%), Postives = 109/157 (69.43%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL P   LF  
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVL-PRGNLFNG 361

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSI 176
            + L+   RDQE   FAW AGNARLI+LSG    + +
Sbjct: 362 TLALAG--RDQETTGFAWWAGNARLINLSGKLLGAHV 390

[Close]
BLAST of CmaCh08G006650 vs. NCBI nr
Match: XP_039116659.1 (LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Dioscorea cayenensis subsp. rotundata])

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-36
Identity = 96/157 (61.15%), Postives = 109/157 (69.43%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL P   LF  
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVL-PRGNLFNG 361

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSI 176
            + L+   RDQE   FAW AGNARLI+LSG    + +
Sbjct: 362 TLALAG--RDQETTGFAWWAGNARLINLSGKLLGAHV 390

[Close]
BLAST of CmaCh08G006650 vs. NCBI nr
Match: XP_022975445.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111474790 [Cucurbita maxima])

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-36
Identity = 96/157 (61.15%), Postives = 109/157 (69.43%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERLFLY 138
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL P   LF  
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVL-PRGNLFNG 361

Query: 139 LMELSSWCRDQEPVCFAWCAGNARLIHLSGACFSSSI 176
            + L+   RDQE   FAW AGNARLI+LSG    + +
Sbjct: 362 TLALAG--RDQETTGFAWWAGNARLINLSGKLLGAHV 390

[Close]
BLAST of CmaCh08G006650 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-32
Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = 0 

Query: 19  EETYSMVTANLFWYQIFGVVFSTKGWLHFFMLFVPVTALWLSALGVVGLALNLRAYDFGC 78
           EETYSMVTAN FW QIFGV FS K WLHFFMLFVPVT LW+SALGVVGLALNLRAYDF  
Sbjct: 242 EETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVS 301

Query: 79  QEIRAAGEDPEFETFYTLLYPESSLNRRYSCLDGGSRSASLKHLLFPEEVLYPGERL 136
           QEIRAA EDPEFETFYT     +   R +      ++    ++L+FPEEVL  G  L
Sbjct: 302 QEIRAA-EDPEFETFYTKNILLNEGIRAWM----AAQDQPHENLIFPEEVLPRGNAL 353

The following BLAST results are available for this feature:
BLAST of CmaCh08G006650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4FFP42.5e-3165.81Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1[more]
Q3V5392.5e-3165.81Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1[more]
A4QJB02.5e-3165.81Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1[more]
A4QJJ42.5e-3165.81Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1[more]
Q70Y082.5e-3165.81Photosystem II D2 protein OS=Amborella trichopoda OX=13333 GN=psbD PE=3 SV=1[more]
BLAST of CmaCh08G006650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A343UQJ31.4e-3760.51Photosystem II D2 protein OS=Populus wilsonii OX=179741 GN=psbD PE=3 SV=1[more]
A0A6J1IGQ77.1e-3761.15Photosystem II D2 protein OS=Cucurbita maxima OX=3661 GN=LOC111474790 PE=3 SV=1[more]
A0A4Y7JY711.2e-3649.32Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_008620 PE=3 SV=1[more]
A0A6P5GV071.2e-3660.51Photosystem II D2 protein OS=Ananas comosus OX=4615 GN=LOC109726479 PE=3 SV=1[more]
A0A6P5MJ252.1e-3660.51Photosystem II D2 protein OS=Arachis duranensis OX=130453 GN=LOC110274666 PE=3 S... [more]
BLAST of CmaCh08G006650 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009470539.13.0e-3760.51PsbD [Populus wilsonii] >AVF96968.1 PsbD [Populus wilsonii][more]
XP_028785496.15.1e-3761.78LOW QUALITY PROTEIN: uncharacterized protein LOC114741409 [Prosopis alba][more]
XP_016648579.11.5e-3661.15PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like... [more]
XP_039116659.11.5e-3661.15LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Dioscorea... [more]
XP_022975445.11.5e-3661.15LOW QUALITY PROTEIN: uncharacterized protein LOC111474790 [Cucurbita maxima][more]
BLAST of CmaCh08G006650 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00270.11.8e-3265.81photosystem II reaction center protein D [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 25..80
e-value: 1.3E-6
score: 27.9
IPR000484Photosynthetic reaction centre, L/MPANTHERPTHR33149PHOTOSYSTEM II PROTEIN D1coord: 18..105
IPR036854Photosystem II protein D1/D2 superfamilyGENE3D1.20.85.10coord: 6..76
e-value: 1.6E-8
score: 36.4
IPR036854Photosystem II protein D1/D2 superfamilySUPERFAMILY81483Bacterial photosystem II reaction centre, L and M subunitscoord: 18..99
NoneNo IPR availablePANTHERPTHR33149:SF7PHOTOSYSTEM II D2 PROTEINcoord: 18..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G006650.1CmaCh08G006650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0034357 photosynthetic membrane
molecular_function GO:0005488 binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity