CmaCh08G006490 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G006490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionNADH dehydrogenase subunit 2
LocationCma_Chr08: 3769327 .. 3770867 (-)
RNA-Seq ExpressionCmaCh08G006490
SyntenyCmaCh08G006490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAATCTTTTTTTAGCGGTTTCCCCAGAGATCTTTATCATTAATGCAACTTTCATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATTATTCACTATTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTGCGCGCCTAGGAGGGCAGCACGGGGATGCAGAGGAGCTATCGCACAACTCCCTAACCTAATGTGGCACCGGGTTTGGGCCGCAGGGAACCGTAGCATGGGGGGACGTCTAATCCTTTTGCCGCCGCAAGGCTGGCTAATCGTACGCAGCAGGCTCGAAGACCCCTGGTTCTGGAAGGCACATGAGTCAGAACGCTATGTTGAATGTGCCACCGACACTACACTACATAGGTACCTGTGCAGGTGAGGCGTCAGTCGGTCCTAGAAACGGCGGCAGCGGCGCGAGGAGTTAATGACCAGACGTGCTGCAACCTAGGGATCACCAGGCAGCTCCTTCCATCTATAGGGATCGGGGGGGCATAGCACAATTCTTCTTGGAGGAGGGTTGGTTTGCCCCAGTGACTGATCCTGCCATAATGTACTCCTACCTATAGCACCGGCACCCGAAGTCGAGCATACATACGATGTTCCTCATGCGTGAATAGCCGGGAGGAAAGAAAGGGCGGTAGATGATAATGAAAAAGGGCGTCTGCACGGGCGGAATGGATGAGCGAAAGGTGCCATGGAGTGAGGAATATATATCTCGAGTCTCATGTAAGACAACAAAACCTCGAGGTGCTGCCAAGGAACTACGGGACCTTCTCGAACACAGGATAGGCAATTGAGATCTCGAGCTAGCCTATTTGTTATGGGGAATCAATGCTCCGGCCCGAATAGAGCTTACCTCCGGCACCTGGCTTTCTCCTAGCTTAGCTGCGCTTAATAGGTCGTTTGGCTTCCTCTCTGGTGGCCTCCTTACCTTACTACCCACCCTACATACACTCCCACTCCAAGCTACGCCTGCTAAGCAAGATGCATTGCGATTTCCTCTTCTGTGGACGCATCAGAATATGATCCGGGACGGGAAGGAAGAGAGACTTTTTTGCGGGCTTTCTCTCGTAAAGCCAAGCCCCAAGACAAGGTAGAATTGTGTGGGAAGGGGACATGAGAAGAAAGAGAACCTGGCTGGATTCGGGCTGGTCTCGTGGCGCCCATTCCTAACCAGTTCCGAAAGGGTTCGCTCATGCTGGAGGGAGCATCCACACTGAGTGATCGGTCCGCTAGTTCACGCAAATTTGAAGAAGTTATCATGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCCGGGCTTTTCTGAGGTATCTAATAACCTTACTTCTACTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCATTTATTCTGGAATAATCTTTTTAGGAGGGACAATTTTACATATTTCTGCCAAATCCTTCTATTATTAAGTACGGTTGGTACCACTTCGATGTGTTTCGATTCTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAA

mRNA sequence

ATGTTCAATCTTTTTTTAGCGGTTTCCCCAGAGATCTTTATCATTAATGCAACTTTCATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATTATTCACTATTAGTCAGTAATGTGGTACGGTTGGTACCACTTCGATGTGTTTCGATTCTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAA

Coding sequence (CDS)

ATGTTCAATCTTTTTTTAGCGGTTTCCCCAGAGATCTTTATCATTAATGCAACTTTCATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATTATTCACTATTAGTCAGTAATGTGGTACGGTTGGTACCACTTCGATGTGTTTCGATTCTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAA

Protein sequence

MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNVVRLVPLRCVSILSNKRGLMLLNSLY
Homology
[Close]
BLAST of CmaCh08G006490 vs. ExPASy Swiss-Prot
Match: O05000 (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana OX=3702 GN=ND2 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAV PEIFIINATFILLIHGVVFSTSKKYDY  L SNV
Sbjct: 12 MFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLASNV 54

[Close]
BLAST of CmaCh08G006490 vs. ExPASy Swiss-Prot
Match: P93401 (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteroana OX=3950 GN=ND2 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAV PEIFIINATFILLIHGVVFSTSKK DY  LVSNV
Sbjct: 1  MFNLFLAVFPEIFIINATFILLIHGVVFSTSKKDDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. ExPASy Swiss-Prot
Match: P26846 (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha OX=3197 GN=ND2 PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 5  FLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          FLA+ PEIF+INAT ILLI+GVVFSTSKKYDY  LV NV
Sbjct: 6  FLALFPEIFLINATIILLIYGVVFSTSKKYDYPPLVRNV 44

[Close]
BLAST of CmaCh08G006490 vs. ExPASy TrEMBL
Match: A0A142I0X2 (NADH dehydrogenase subunit 2 OS=Nicotiana sylvestris OX=4096 GN=nad2 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNV
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. ExPASy TrEMBL
Match: A0A290WL02 (NADH dehydrogenase subunit 2 OS=Solanum lycopersicum OX=4081 GN=nad2 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNV
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. ExPASy TrEMBL
Match: A0A7S9H4D1 (NADH dehydrogenase subunit 2 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=nad2 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNV
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. ExPASy TrEMBL
Match: A0A7G8P4D5 (NADH dehydrogenase subunit 2 OS=Daucus crinitus OX=79167 GN=nad2 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNV
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. ExPASy TrEMBL
Match: A0A7G8P4E0 (NADH dehydrogenase subunit 2 OS=Daucus involucratus OX=180804 GN=nad2 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNV
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. NCBI nr
Match: KAF3671682.1 (hypothetical protein FXO37_07921 [Capsicum annuum])

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNVVRL 47
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNVV L
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVVWL 46

[Close]
BLAST of CmaCh08G006490 vs. NCBI nr
Match: AUD39026.1 (NADH dehydrogenase subunit 2, partial [Psychotria kirkii])

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-11
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNV
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. NCBI nr
Match: AXS77386.1 (Nad2 [Fallopia multiflora] >QXP99878.1 NADH dehydrogenase subunit 2 [Fallopia aubertii])

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-11
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNV
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. NCBI nr
Match: AUD39051.1 (NADH dehydrogenase subunit 2, partial [Ixora hookeri] >AUD39055.1 NADH dehydrogenase subunit 2, partial [Ixora parviflora])

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-11
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNV
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. NCBI nr
Match: AUD39016.1 (NADH dehydrogenase subunit 2, partial [Coptosapelta flavescens])

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-11
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDY  LVSNV
Sbjct: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNV 43

[Close]
BLAST of CmaCh08G006490 vs. TAIR 10
Match: ATMG00285.1 (NADH dehydrogenase 2A )

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINAT ILLIHGVVFSTSKKYDY  L SNV
Sbjct: 12 MFNLFLAVSPEIFIINATSILLIHGVVFSTSKKYDYPPLASNV 54

[Close]
BLAST of CmaCh08G006490 vs. TAIR 10
Match: ATMG01320.1 (NADH dehydrogenase 2B )

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MFNLFLAVSPEIFIINATFILLIHGVVFSTSKKYDYSLLVSNV 44
          MFNLFLAVSPEIFIINAT ILLIHGVVFSTSKKYDY  L SNV
Sbjct: 12 MFNLFLAVSPEIFIINATSILLIHGVVFSTSKKYDYPPLASNV 54

The following BLAST results are available for this feature:
BLAST of CmaCh08G006490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O050001.0e-1290.70NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana OX=3702 GN=ND2 PE... [more]
P934014.9e-1290.70NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteroana OX=3950 GN=ND2 PE... [more]
P268461.9e-0879.49NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha OX=3197 GN=ND2 P... [more]
BLAST of CmaCh08G006490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A142I0X22.5e-1195.35NADH dehydrogenase subunit 2 OS=Nicotiana sylvestris OX=4096 GN=nad2 PE=3 SV=1[more]
A0A290WL022.5e-1195.35NADH dehydrogenase subunit 2 OS=Solanum lycopersicum OX=4081 GN=nad2 PE=3 SV=1[more]
A0A7S9H4D12.5e-1195.35NADH dehydrogenase subunit 2 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 ... [more]
A0A7G8P4D52.5e-1195.35NADH dehydrogenase subunit 2 OS=Daucus crinitus OX=79167 GN=nad2 PE=3 SV=1[more]
A0A7G8P4E02.5e-1195.35NADH dehydrogenase subunit 2 OS=Daucus involucratus OX=180804 GN=nad2 PE=3 SV=1[more]
BLAST of CmaCh08G006490 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3671682.11.8e-1193.48hypothetical protein FXO37_07921 [Capsicum annuum][more]
AUD39026.15.3e-1195.35NADH dehydrogenase subunit 2, partial [Psychotria kirkii][more]
AXS77386.15.3e-1195.35Nad2 [Fallopia multiflora] >QXP99878.1 NADH dehydrogenase subunit 2 [Fallopia au... [more]
AUD39051.15.3e-1195.35NADH dehydrogenase subunit 2, partial [Ixora hookeri] >AUD39055.1 NADH dehydroge... [more]
AUD39016.15.3e-1195.35NADH dehydrogenase subunit 2, partial [Coptosapelta flavescens][more]
BLAST of CmaCh08G006490 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00285.11.2e-1390.70NADH dehydrogenase 2A [more]
ATMG01320.11.2e-1390.70NADH dehydrogenase 2B [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G006490.1CmaCh08G006490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042773 ATP synthesis coupled electron transport
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009579 thylakoid
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity